CSPI07G14190.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI07G14190.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 12696462 .. 12696653 (+)
Sequence length192
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGAGGAAGGTTCTACAACCTTTATTATTGCTAATGGTGAAGGTTCAGATAGCTCAGATAACATAGGTGCAATTCTCGAATTTTCGAGCGATGCTCGTGAGAGTGATGAGGATGATTCCGACGTGGATGGTAGAACTCAAACAAACTCCAATGACAATAGAACTGATCAAAATCACTCTGAACCCACC

mRNA sequence

ATGTTAGAGGAAGGTTCTACAACCTTTATTATTGCTAATGGTGAAGGTTCAGATAGCTCAGATAACATAGGTGCAATTCTCGAATTTTCGAGCGATGCTCGTGAGAGTGATGAGGATGATTCCGACGTGGATGGTAGAACTCAAACAAACTCCAATGACAATAGAACTGATCAAAATCACTCTGAACCCACC

Coding sequence (CDS)

ATGTTAGAGGAAGGTTCTACAACCTTTATTATTGCTAATGGTGAAGGTTCAGATAGCTCAGATAACATAGGTGCAATTCTCGAATTTTCGAGCGATGCTCGTGAGAGTGATGAGGATGATTCCGACGTGGATGGTAGAACTCAAACAAACTCCAATGACAATAGAACTGATCAAAATCACTCTGAACCCACC
Homology
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BLAST of CSPI07G14190.1 vs. NCBI nr
Match: gi|659116253|ref|XP_008457982.1| (PREDICTED: E3 ubiquitin-protein ligase PRT1 isoform X1 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 1   MLEEGSTTFIIANGEGSDSSDNIGAILEFSSDARESDEDDSDVDGRTQTNSNDNRTDQNH 60
           MLEEGSTTFIIANGEGSDSSDNIGAILEFSSDARESDEDDSDVDGRTQ NS+D+RTDQN+
Sbjct: 443 MLEEGSTTFIIANGEGSDSSDNIGAILEFSSDARESDEDDSDVDGRTQINSSDDRTDQNY 502

Query: 61  SEPT 65
           SEP+
Sbjct: 503 SEPS 506

The following BLAST results are available for this feature:
BLAST of CSPI07G14190.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G14190.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI07G14190.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G14190.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116253|ref|XP_008457982.1|1.2e-2092.19PREDICTED: E3 ubiquitin-protein ligase PRT1 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI07G14190CSPI07G14190gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI07G14190.1CSPI07G14190.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G14190.mrna.cds.1CSPI07G14190.mrna.cds.1CDS