CSPI07G14190 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G14190
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 12696462 .. 12696653 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGAGGAAGGTTCTACAACCTTTATTATTGCTAATGGTGAAGGTTCAGATAGCTCAGATAACATAGGTGCAATTCTCGAATTTTCGAGCGATGCTCGTGAGAGTGATGAGGATGATTCCGACGTGGATGGTAGAACTCAAACAAACTCCAATGACAATAGAACTGATCAAAATCACTCTGAACCCACC

mRNA sequence

ATGTTAGAGGAAGGTTCTACAACCTTTATTATTGCTAATGGTGAAGGTTCAGATAGCTCAGATAACATAGGTGCAATTCTCGAATTTTCGAGCGATGCTCGTGAGAGTGATGAGGATGATTCCGACGTGGATGGTAGAACTCAAACAAACTCCAATGACAATAGAACTGATCAAAATCACTCTGAACCCACC

Coding sequence (CDS)

ATGTTAGAGGAAGGTTCTACAACCTTTATTATTGCTAATGGTGAAGGTTCAGATAGCTCAGATAACATAGGTGCAATTCTCGAATTTTCGAGCGATGCTCGTGAGAGTGATGAGGATGATTCCGACGTGGATGGTAGAACTCAAACAAACTCCAATGACAATAGAACTGATCAAAATCACTCTGAACCCACC
Homology
[Close]
BLAST of CSPI07G14190 vs. NCBI nr
Match: gi|659116253|ref|XP_008457982.1| (PREDICTED: E3 ubiquitin-protein ligase PRT1 isoform X1 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 1   MLEEGSTTFIIANGEGSDSSDNIGAILEFSSDARESDEDDSDVDGRTQTNSNDNRTDQNH 60
           MLEEGSTTFIIANGEGSDSSDNIGAILEFSSDARESDEDDSDVDGRTQ NS+D+RTDQN+
Sbjct: 443 MLEEGSTTFIIANGEGSDSSDNIGAILEFSSDARESDEDDSDVDGRTQINSSDDRTDQNY 502

Query: 61  SEPT 65
           SEP+
Sbjct: 503 SEPS 506

The following BLAST results are available for this feature:
BLAST of CSPI07G14190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G14190 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI07G14190 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G14190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116253|ref|XP_008457982.1|1.2e-2092.19PREDICTED: E3 ubiquitin-protein ligase PRT1 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G14190.1CSPI07G14190.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G14190Lsi02G020810Bottle gourd (USVL1VR-Ls)cpilsiB517
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G14190Cucurbita pepo (Zucchini)cpecpiB159
CSPI07G14190Cucurbita pepo (Zucchini)cpecpiB341
CSPI07G14190Melon (DHL92) v3.6.1cpimedB513
CSPI07G14190Cucumber (Gy14) v2cgybcpiB331
CSPI07G14190Silver-seed gourdcarcpiB0100
CSPI07G14190Silver-seed gourdcarcpiB0463
CSPI07G14190Cucumber (Chinese Long) v3cpicucB414
CSPI07G14190Watermelon (97103) v2cpiwmbB597
CSPI07G14190Cucumber (Gy14) v1cgycpiB079
CSPI07G14190Cucurbita maxima (Rimu)cmacpiB388
CSPI07G14190Cucurbita maxima (Rimu)cmacpiB936
CSPI07G14190Cucurbita moschata (Rifu)cmocpiB377
CSPI07G14190Cucurbita moschata (Rifu)cmocpiB915
CSPI07G14190Cucumber (Chinese Long) v2cpicuB354
CSPI07G14190Melon (DHL92) v3.5.1cpimeB536
CSPI07G14190Melon (DHL92) v3.5.1cpimeB527
CSPI07G14190Watermelon (Charleston Gray)cpiwcgB554
CSPI07G14190Watermelon (97103) v1cpiwmB586