CSPI07G11800.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI07G11800.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 10002448 .. 10004162 (+)
Sequence length408
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCAAAGTTTCAAAAACAATAGGCTTCTAAACAAATAAGTTCACTTGTGAAAAACTGAAAACCAAATTTTAGAAAATAAAATAACAAACAGAGCCATTTTCATAGACATCCTTCTCACTTGTACTGTCTAGATAGTTTCAATGTGATAAATACACCTCTTAACACTTTAAAATTGAAATCATACGCATAAATAATTGAGTTTTCAAATAAAAATACAAAGAGAATGGAGCTCAACCCAACTTATGCACACCTTCACACATTGCTTTCATGCTAAGAAGAATGCTGAAACTAAGATACCCAAAGAGAAAGAGAGATGTATAAACATATAATGGAACTGGTAAAAGAGATGGTCTCATTTAAGAGTTGTTTTTCCATCACTTCCCTTCCCTCTCTTTCTCATTGTGCACATTCCTGGAGCTAAACTAACCAAGCAAAAAGACATCTTACAAAGTGTCCAGGACATCGATCACATTGGAATATCAATTCAACACATTTTTTCATTCTTAGGTGGGGAGAGAACCAAGCAAATAAAACTAACAGAAATACTAGATGAATAAATTATCTATAGATGAAGAGTGGTATCGACATTTGGACTATCGAAACTTCTAAATGTACTCACCATGAATGAGTTTCCAAGCTCGAACTTGGTGTCACCTGGCATCGACCTGGCTTCATGGATATCAATATCAACTTGCTTACCTGCATTATTCTCCAAGTTCAAACCAAGGGAGAGGGAATTGGAATCCAAATCTCTTGAGGTCGACGAGCCATTTGGTTCTAAATGCATTATCGAGGCGTCAACCCTATTAGATTCGAATAGCAGGTTAAGAAGCTCCTTCCTCTCTCTCCTTTGCTTGTTTTTCTGCAATTGTCTGAATCTCTCTTGTAACAGCGCTATGGAGGTACCAACCATGGTAGGTTCACTATTGTGTCTACCCATTGGAGAATACACTCAAGGGGAGTTTAAGCTGCAGCTGCTTATAGTATGTGAAGTTTACATAGTTATGGAGATCAATGTGTACTTATAAGATATTAGGATTAGAATGTTTTGCTCTTATCATTAGAATAGGGGAACAGAGTCGTTTCTGATTGATTAGTGATGTGATACCGAAGAGAATCAGCTGGCTTGTAAGAAAATCCAAATAGCAAGAGTTTAAAAAAGGCTGGTCTAGAGAGGGTTGGGTTGGTGAATATTTTAGGGAAAATGACTTTTGATGGAAAGAAAATGTATGTAACAAGTCCAAACTAAAAATGGATGGTAGTGTTTGGAAAGAAGCTTAAGGAATAAAAACTAAAAAGTTTAGGTAATGGTATGTGTCATGTTTTTGGACTCTTGCAATTCCTTTCACAACAAAGATTTTTTTTTTTTCATGGCTTTTGAATAGGGTTGTAAAAAGAGGGCCAGGGGAAGTGAGAATGTGCAGAGAAGACAAGGTTTAGGTTTAGGTTTAGGAGGAATATTTTGGATTAAAGATGACTTTTAATAAGGGCCCCCAACATAATGCAATGCATGACATGAAAGAGAGAAAGAGAACAAGAACATAATGTTGTTGTCTTCCTTCCAGACATCTCTACTAACCATTTTCATTTTCTACTTTGTTTCAATATCAGTTTTGGAGTATCTGAAACAAAAACTTTGCTCCACGTCAAATCTGAAATGGAAGCAACCCAAGACTTCAACAAACTGTATTGCTTGATGTAATCTAGTTTTGAG

mRNA sequence

ATGAATGAGTTTCCAAGCTCGAACTTGGTGTCACCTGGCATCGACCTGGCTTCATGGATATCAATATCAACTTGCTTACCTGCATTATTCTCCAAGTTCAAACCAAGGGAGAGGGAATTGGAATCCAAATCTCTTGAGGTCGACGAGCCATTTGGTTCTAAATGCATTATCGAGGCGTCAACCCTATTAGATTCGAATAGCAGGTTAAGAAGCTCCTTCCTCTCTCTCCTTTGCTTGTTTTTCTGCAATTGTCTGAATCTCTCTTGTAACAGCGCTATGGAGGTACCAACCATGGTAGGTTCACTATTGTGTCTACCCATTGGAGAATACACTCAAGGGGAGTTTAAGCTGCAGCTGCTTATAGTATGTGAAGTTTACATAGTTATGGAGATCAATGTGTACTTATAA

Coding sequence (CDS)

ATGAATGAGTTTCCAAGCTCGAACTTGGTGTCACCTGGCATCGACCTGGCTTCATGGATATCAATATCAACTTGCTTACCTGCATTATTCTCCAAGTTCAAACCAAGGGAGAGGGAATTGGAATCCAAATCTCTTGAGGTCGACGAGCCATTTGGTTCTAAATGCATTATCGAGGCGTCAACCCTATTAGATTCGAATAGCAGGTTAAGAAGCTCCTTCCTCTCTCTCCTTTGCTTGTTTTTCTGCAATTGTCTGAATCTCTCTTGTAACAGCGCTATGGAGGTACCAACCATGGTAGGTTCACTATTGTGTCTACCCATTGGAGAATACACTCAAGGGGAGTTTAAGCTGCAGCTGCTTATAGTATGTGAAGTTTACATAGTTATGGAGATCAATGTGTACTTATAA
Homology
[Close]
BLAST of CSPI07G11800.1 vs. TrEMBL
Match: A0A0A0K3U6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G272120 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-68
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1 

Query: 1   MNEFPSSNLVSPGIDLASWISISTCLPALFSKFKPRERELESKSLEVDEPFGSKCIIEAS 60
           MNEFPSSNLVSPGIDLASWISISTCLPALFSKFKPRERELESKSLEVDEPFGSKCIIEAS
Sbjct: 1   MNEFPSSNLVSPGIDLASWISISTCLPALFSKFKPRERELESKSLEVDEPFGSKCIIEAS 60

Query: 61  TLLDSNSRLRSSFLSLLCLFFCNCLNLSCNSAMEVPTMVGSLLCLPIGEYTQGEFKLQLL 120
           TLLDSNSRLRSSFLSLLCLFFCNCLNLSCNSAMEVPTMVGSLLCLPIGEYTQGEFKLQLL
Sbjct: 61  TLLDSNSRLRSSFLSLLCLFFCNCLNLSCNSAMEVPTMVGSLLCLPIGEYTQGEFKLQLL 120

Query: 121 IVCEVYIVMEINVYL 136
           IVCEVYIVMEINVYL
Sbjct: 121 IVCEVYIVMEINVYL 135

[Close]
BLAST of CSPI07G11800.1 vs. NCBI nr
Match: gi|700189137|gb|KGN44370.1| (hypothetical protein Csa_7G272120 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 1.9e-68
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1 

Query: 1   MNEFPSSNLVSPGIDLASWISISTCLPALFSKFKPRERELESKSLEVDEPFGSKCIIEAS 60
           MNEFPSSNLVSPGIDLASWISISTCLPALFSKFKPRERELESKSLEVDEPFGSKCIIEAS
Sbjct: 1   MNEFPSSNLVSPGIDLASWISISTCLPALFSKFKPRERELESKSLEVDEPFGSKCIIEAS 60

Query: 61  TLLDSNSRLRSSFLSLLCLFFCNCLNLSCNSAMEVPTMVGSLLCLPIGEYTQGEFKLQLL 120
           TLLDSNSRLRSSFLSLLCLFFCNCLNLSCNSAMEVPTMVGSLLCLPIGEYTQGEFKLQLL
Sbjct: 61  TLLDSNSRLRSSFLSLLCLFFCNCLNLSCNSAMEVPTMVGSLLCLPIGEYTQGEFKLQLL 120

Query: 121 IVCEVYIVMEINVYL 136
           IVCEVYIVMEINVYL
Sbjct: 121 IVCEVYIVMEINVYL 135

The following BLAST results are available for this feature:
BLAST of CSPI07G11800.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G11800.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3U6_CUCSA1.3e-68100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G272120 PE=4 SV=1[more]
BLAST of CSPI07G11800.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G11800.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189137|gb|KGN44370.1|1.9e-68100.00hypothetical protein Csa_7G272120 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI07G11800CSPI07G11800gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI07G11800.1CSPI07G11800.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G11800.1.utr5p1CSPI07G11800.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G11800.1.cds1CSPI07G11800.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G11800.1.utr3p1CSPI07G11800.1.utr3p1three_prime_UTR