CSPI07G10700.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G10700.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Cysteine-rich TM module stress tolerance protein
Location	Chr7 : 8801077 .. 8801969 (-)
Sequence length	261

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAAATATGTATTTCTATAAATATAAATCCAACCCGCCCATGCTTTCTCATAACTTACATTTCTCCATTTCCATCATAATTATATCTGTGCAATTCACACCTCCATTTTACGATCTTGATTCTTTACGGCCTTCCGTTTTTTATTTTCCATCATCATGAGCCAATATCGCAACCAAGAAATTAGCAGTAAGTATACATTAGAGTTTATTTTTTTGGTAGTTTAATTTCGACGGCGCCGTTTGTAATAATTTGAAATTGGTTTGTCTTGTGGTTGCAGTGGGTTATCCGGCACCACCACCGTCGTATGCGGCGGGGGAGCAAGCGAAAGAGGGGAAGTCGGGGCCTTATGTTGCAGCCCCGCCTCCGGTTGGATATCCGGTGAGGGACGGGCCACAGTACCCTCACCAAACTAATTTTGACGCTCAAACTCAATCTAGAGGAGATGGGTTCTGGAAAGGATGGTTAGTTTCTTTAAATTCCATTTCTTTTTCTTTTTCTTTTTTTTCAAACAAGGAAGTATATATTGTTAAGTTGATTGTTTGGGTAATCAAACTAATGTGGAATTTGATGGATGTGTGTGTTTTTGTAGCTGTGCTGCATTGTGTTGCTGCTGGGTATTGGATTGTATCTTTTGATCAGGATGCTGACTTAGCTACCATTTGTCGGTTGTTGGTTTTGGTTGAGATGACACCCAGTTTTTTCAGTCTTCATTAGTTTAGTTTTGCTCTATTTGTTATTCTTTTATTATGTATTATATATAATGTTGTTTATGTATCGCCCCCTCTTGTCTTTTTGGGGCTTTGTATTTTCATCTTTATTCCATACTCATTTTTTGTATCAATAAATAATATGCATATTTTCTTGTGCAATAGTAATACTATTCTCTTTTCAA

mRNA sequence

ATGAGCCAATATCGCAACCAAGAAATTAGCATGGGTTATCCGGCACCACCACCGTCGTATGCGGCGGGGGAGCAAGCGAAAGAGGGGAAGTCGGGGCCTTATGTTGCAGCCCCGCCTCCGGTTGGATATCCGGTGAGGGACGGGCCACAGTACCCTCACCAAACTAATTTTGACGCTCAAACTCAATCTAGAGGAGATGGGTTCTGGAAAGGATGCTGTGCTGCATTGTGTTGCTGCTGGGTATTGGATTGTATCTTTTGA

Coding sequence (CDS)

ATGAGCCAATATCGCAACCAAGAAATTAGCATGGGTTATCCGGCACCACCACCGTCGTATGCGGCGGGGGAGCAAGCGAAAGAGGGGAAGTCGGGGCCTTATGTTGCAGCCCCGCCTCCGGTTGGATATCCGGTGAGGGACGGGCCACAGTACCCTCACCAAACTAATTTTGACGCTCAAACTCAATCTAGAGGAGATGGGTTCTGGAAAGGATGCTGTGCTGCATTGTGTTGCTGCTGGGTATTGGATTGTATCTTTTGA

Homology

[Close]

BLAST of CSPI07G10700.1 vs. TrEMBL
Match: A0A0A0K5N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G237300 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 7.7e-46
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQ 60
          MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQ
Sbjct: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQ 60

Query: 61 TQSRGDGFWKGCCAALCCCWVLDCIF 87
          TQSRGDGFWKGCCAALCCCWVLDCIF
Sbjct: 61 TQSRGDGFWKGCCAALCCCWVLDCIF 86

[Close]

BLAST of CSPI07G10700.1 vs. TrEMBL
Match: A0A0S3SKA6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G220400 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-16
Identity = 45/89 (50.56%), Postives = 54/89 (60.67%), Query Frame = 1


Query: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQ---YPHQTNF 60
          M+ Y  QE  + YP    +Y+         S PYV APPP+GYP +D P    YP Q   
Sbjct: 1  MNHYNQQEAPVSYPPKVQAYS---------SAPYVTAPPPMGYPSKDQPAAVGYPQQ-RV 60

Query: 61 DAQTQSRGDGFWKGCCAALCCCWVLDCIF 87
            +T +RGDGFWKGCCAALCCCW+LDC F
Sbjct: 61 PEETTTRGDGFWKGCCAALCCCWILDCCF 79

[Close]

BLAST of CSPI07G10700.1 vs. TrEMBL
Match: V7BXH8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G057200g PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.3e-16
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 1  MSQYRNQ-EISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQ---YPHQTN 60
          M+ + NQ E  + YPA   +Y+         S PYV+APPP+GYP +D P    YP Q  
Sbjct: 1  MNHFNNQQEAPVSYPAQVQAYS---------SAPYVSAPPPMGYPSKDEPATVGYPPQ-R 60

Query: 61 FDAQTQSRGDGFWKGCCAALCCCWVLDCIF 87
             +T+S+GDGFWKGCCAALCCCWVLDC F
Sbjct: 61 VPEETRSKGDGFWKGCCAALCCCWVLDCCF 80

[Close]

BLAST of CSPI07G10700.1 vs. TrEMBL
Match: V7BW57_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G057400g PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-15
Identity = 43/70 (61.43%), Postives = 47/70 (67.14%), Query Frame = 1


Query: 17 PPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQTQSRGDGFWKGCCAAL 76
          P SYA   Q +   S PYV APPP+GYP +DG     Q     +T SRGDGFWKGCCAAL
Sbjct: 11 PVSYAP--QGQVYSSTPYVTAPPPMGYPSKDGSVGYPQQRVPEETTSRGDGFWKGCCAAL 70

Query: 77 CCCWVLDCIF 87
          CCCWVLDC F
Sbjct: 71 CCCWVLDCCF 78

[Close]

BLAST of CSPI07G10700.1 vs. TrEMBL
Match: A0A0B2QZ76_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_011417 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.4e-15
Identity = 45/89 (50.56%), Postives = 53/89 (59.55%), Query Frame = 1


Query: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQ---YPHQTNF 60
          MS++ NQ+ +     PP               PYV+APPP+GYP +D P    YP Q   
Sbjct: 1  MSRFNNQQEAPAVSYPP--------------APYVSAPPPMGYPSKDDPTAVGYPQQ-RV 60

Query: 61 DAQTQSRGDGFWKGCCAALCCCWVLDCIF 87
            +T SRGDGFWKGCCAALCCCWVLDC F
Sbjct: 61 PEETTSRGDGFWKGCCAALCCCWVLDCCF 74

[Close]

BLAST of CSPI07G10700.1 vs. TAIR10
Match: AT2G32210.1 (AT2G32210.1 unknown protein)

HSP 1 Score: 73.6 bits (179), Expect = 6.9e-14
Identity = 42/86 (48.84%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQ 60
          MSQY   + S  YP PP S           +GPYVA PPP+GYP  D     H T    +
Sbjct: 1  MSQYSQNQSSGAYPTPPVS-----------TGPYVA-PPPLGYPTNDTS---HATVATVE 60

Query: 61 TQSRGDGFWKGCCAALCCCWVLDCIF 87
          T+S+GDGF KGC AA+CCC VLD  F
Sbjct: 61 TKSKGDGFLKGCLAAMCCCCVLDACF 71

[Close]

BLAST of CSPI07G10700.1 vs. TAIR10
Match: AT2G32190.1 (AT2G32190.1 unknown protein)

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-13
Identity = 40/86 (46.51%), Postives = 48/86 (55.81%), Query Frame = 1


Query: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQ 60
          MSQY   + S  YP PP S           +GPY+  PPP+GYP  D     H T    +
Sbjct: 1  MSQYSQNQSSGAYPTPPVS-----------TGPYMT-PPPLGYPTSD---ISHATVAPVE 60

Query: 61 TQSRGDGFWKGCCAALCCCWVLDCIF 87
          T+S+GDGF KGC AA+CCC VLD  F
Sbjct: 61 TKSKGDGFLKGCLAAMCCCCVLDACF 71

[Close]

BLAST of CSPI07G10700.1 vs. TAIR10
Match: AT3G22240.1 (AT3G22240.1 unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 5.9e-13
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 1


Query: 24 EQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQTQSRGDGFWKGCCAALCCCWVLD 83
          E+  +  SGPY + PPP+GYP RD            +T+S+GDGFWKGCCAA+CCC VLD
Sbjct: 12 EKPSQTSSGPYTS-PPPIGYPTRDA-MVGDPPAAAVETKSKGDGFWKGCCAAICCCCVLD 71

Query: 84 CIF 87
            F
Sbjct: 72 ACF 72

[Close]

BLAST of CSPI07G10700.1 vs. TAIR10
Match: AT1G56060.1 (AT1G56060.1 unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-09
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 1


Query: 34 YVAAPPPVGYPV--RDGPQYPHQTNFDAQTQSRGDGFWKGCCAALCCCWVLDCIF 87
          YV APPP+GYPV  +D PQ   Q   + Q++  G GF +GC AA+CCC VLDC+F
Sbjct: 19 YVTAPPPMGYPVMMKDSPQTV-QPPHEGQSKGSG-GFLRGCLAAMCCCCVLDCVF 71

[Close]

BLAST of CSPI07G10700.1 vs. TAIR10
Match: AT1G05340.1 (AT1G05340.1 unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-09
Identity = 32/86 (37.21%), Postives = 43/86 (50.00%), Query Frame = 1


Query: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQ 60
          MSQY + + +   P PP S                + PPP+GYP    P +        +
Sbjct: 1  MSQYDHNQSAGANPPPPMSTCT-------------SPPPPIGYPTNQ-PSHGSVAQGKVE 60

Query: 61 TQSRGDGFWKGCCAALCCCWVLDCIF 87
          T+S+GDGF+KGC AA+CCC  LD  F
Sbjct: 61 TKSKGDGFFKGCLAAMCCCCALDICF 72

[Close]

BLAST of CSPI07G10700.1 vs. NCBI nr
Match: gi|778725970|ref|XP_011659032.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 1.1e-45
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQ 60
          MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQ
Sbjct: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQ 60

Query: 61 TQSRGDGFWKGCCAALCCCWVLDCIF 87
          TQSRGDGFWKGCCAALCCCWVLDCIF
Sbjct: 61 TQSRGDGFWKGCCAALCCCWVLDCIF 86

[Close]

BLAST of CSPI07G10700.1 vs. NCBI nr
Match: gi|659092574|ref|XP_008447127.1| (PREDICTED: CYSTM1 family protein A-like [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 1.6e-44
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQ 60
          MSQYRNQEI MGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTN DAQ
Sbjct: 1  MSQYRNQEIDMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNLDAQ 60

Query: 61 TQSRGDGFWKGCCAALCCCWVLDCIF 87
          TQSRGDGFWKGCCAALCCCWVLDCIF
Sbjct: 61 TQSRGDGFWKGCCAALCCCWVLDCIF 86

[Close]

BLAST of CSPI07G10700.1 vs. NCBI nr
Match: gi|965606090|dbj|BAT93266.1| (hypothetical protein VIGAN_07220400 [Vigna angularis var. angularis])

HSP 1 Score: 92.0 bits (227), Expect = 5.3e-16
Identity = 45/89 (50.56%), Postives = 54/89 (60.67%), Query Frame = 1


Query: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQ---YPHQTNF 60
          M+ Y  QE  + YP    +Y+         S PYV APPP+GYP +D P    YP Q   
Sbjct: 1  MNHYNQQEAPVSYPPKVQAYS---------SAPYVTAPPPMGYPSKDQPAAVGYPQQ-RV 60

Query: 61 DAQTQSRGDGFWKGCCAALCCCWVLDCIF 87
            +T +RGDGFWKGCCAALCCCW+LDC F
Sbjct: 61 PEETTTRGDGFWKGCCAALCCCWILDCCF 79

[Close]

BLAST of CSPI07G10700.1 vs. NCBI nr
Match: gi|950973095|ref|XP_014500656.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Vigna radiata var. radiata])

HSP 1 Score: 92.0 bits (227), Expect = 5.3e-16
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 1


Query: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQ---YPHQTNF 60
          M+ +  QE  + YPA   +Y+         S PYV+APPP+GYP +D P    YP +   
Sbjct: 1  MNHFNQQEAPVSYPAQVQAYS---------SAPYVSAPPPMGYPSKDEPAAVGYPQRV-- 60

Query: 61 DAQTQSRGDGFWKGCCAALCCCWVLDCIF 87
            +T SRGDGFWKGCCAALCCCW+LDC F
Sbjct: 61 PEETTSRGDGFWKGCCAALCCCWILDCCF 78

[Close]

BLAST of CSPI07G10700.1 vs. NCBI nr
Match: gi|568855524|ref|XP_006481354.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like isoform X1 [Citrus sinensis])

HSP 1 Score: 91.7 bits (226), Expect = 7.0e-16
Identity = 45/86 (52.33%), Postives = 52/86 (60.47%), Query Frame = 1


Query: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQ 60
          MS Y   + S+ YP PPPS  AG          YVAAPPP GYP +DG  + +  N   +
Sbjct: 1  MSSYNQNQSSVAYPPPPPSTTAGL---------YVAAPPPAGYPTKDG-DHGYAQNAPVE 60

Query: 61 TQSRGDGFWKGCCAALCCCWVLDCIF 87
          T+SRGDGFWKGCCA LCCC  LD  F
Sbjct: 61 TKSRGDGFWKGCCAGLCCCCALDACF 76

The following BLAST results are available for this feature:

BLAST of CSPI07G10700.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G10700.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5N8_CUCSA	7.7e-46	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G237300 PE=4 SV=1	[more]
A0A0S3SKA6_PHAAN	3.7e-16	50.56	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G220400 PE=...	[more]
V7BXH8_PHAVU	8.3e-16	52.22	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G057200g PE=4 SV=1	[more]
V7BW57_PHAVU	4.1e-15	61.43	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G057400g PE=4 SV=1	[more]
A0A0B2QZ76_GLYSO	5.4e-15	50.56	Uncharacterized protein OS=Glycine soja GN=glysoja_011417 PE=4 SV=1	[more]

BLAST of CSPI07G10700.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32210.1	6.9e-14	48.84	unknown protein	[more]
AT2G32190.1	3.4e-13	46.51	unknown protein	[more]
AT3G22240.1	5.9e-13	52.38	unknown protein	[more]
AT1G56060.1	2.3e-09	54.55	unknown protein	[more]
AT1G05340.1	3.0e-09	37.21	unknown protein	[more]

BLAST of CSPI07G10700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778725970\|ref\|XP_011659032.1\|	1.1e-45	100.00	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cuc...	[more]
gi\|659092574\|ref\|XP_008447127.1\|	1.6e-44	97.67	PREDICTED: CYSTM1 family protein A-like [Cucumis melo]	[more]
gi\|965606090\|dbj\|BAT93266.1\|	5.3e-16	50.56	hypothetical protein VIGAN_07220400 [Vigna angularis var. angularis]	[more]
gi\|950973095\|ref\|XP_014500656.1\|	5.3e-16	50.56	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Vig...	[more]
gi\|568855524\|ref\|XP_006481354.1\|	7.0e-16	52.33	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like isof...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR028144	CYSTM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G10700	CSPI07G10700	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G10700.1	CSPI07G10700.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G10700.1.utr3p1	CSPI07G10700.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G10700.1.cds3	CSPI07G10700.1.cds3	CDS
CSPI07G10700.1.cds2	CSPI07G10700.1.cds2	CDS
CSPI07G10700.1.cds1	CSPI07G10700.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G10700.1.utr5p1	CSPI07G10700.1.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028144	Cysteine-rich transmembrane CYSTM domain	PFAM	PF12734	CYSTM	coord: 38..86 score: 9.4
None	No IPR available	PANTHER	PTHR31568	FAMILY NOT NAMED	coord: 1..86 score: 3.2
None	No IPR available	PANTHER	PTHR31568:SF17	EXPRESSED PROTEIN	coord: 1..86 score: 3.2