CSPI07G09320.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI07G09320.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 7278155 .. 7278361 (+)
Sequence length207
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGATCATCAACCCTGGTTGGAACCCGAATATACTCGTGTACCGAAGTCCGTCAATGCACATCATAGTAGATTCATGACAGGAATGCTCGACAGTATGTCAAACCAGAATGTCTATTGGCCGAGAAATTTGAGGTCTAATTTTGGTGAGAAAACTGTGAGATCAGATGCAAGAACCATTCCACGATTATTCCACTATCTGTAA

mRNA sequence

ATGCAGGATCATCAACCCTGGTTGGAACCCGAATATACTCGTGTACCGAAGTCCGTCAATGCACATCATAGTAGATTCATGACAGGAATGCTCGACAGTATGTCAAACCAGAATGTCTATTGGCCGAGAAATTTGAGGTCTAATTTTGGTGAGAAAACTGTGAGATCAGATGCAAGAACCATTCCACGATTATTCCACTATCTGTAA

Coding sequence (CDS)

ATGCAGGATCATCAACCCTGGTTGGAACCCGAATATACTCGTGTACCGAAGTCCGTCAATGCACATCATAGTAGATTCATGACAGGAATGCTCGACAGTATGTCAAACCAGAATGTCTATTGGCCGAGAAATTTGAGGTCTAATTTTGGTGAGAAAACTGTGAGATCAGATGCAAGAACCATTCCACGATTATTCCACTATCTGTAA
Homology
[Close]
BLAST of CSPI07G09320.1 vs. TrEMBL
Match: A0A0A0K599_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G193740 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.5e-33
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MQDHQPWLEPEYTRVPKSVNAHHSRFMTGMLDSMSNQNVYWPRNLRSNFGEKTVRSDART 60
          MQDHQPWLEPEY+RVPKSVNAHHSRFMTGMLDSMSNQNVYWPRNLRSNFGEKTVRSDART
Sbjct: 1  MQDHQPWLEPEYSRVPKSVNAHHSRFMTGMLDSMSNQNVYWPRNLRSNFGEKTVRSDART 60

Query: 61 IPRLFHYL 69
          IPRLFHYL
Sbjct: 61 IPRLFHYL 68

[Close]
BLAST of CSPI07G09320.1 vs. NCBI nr
Match: gi|700188881|gb|KGN44114.1| (hypothetical protein Csa_7G193740 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 5.0e-33
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MQDHQPWLEPEYTRVPKSVNAHHSRFMTGMLDSMSNQNVYWPRNLRSNFGEKTVRSDART 60
          MQDHQPWLEPEY+RVPKSVNAHHSRFMTGMLDSMSNQNVYWPRNLRSNFGEKTVRSDART
Sbjct: 1  MQDHQPWLEPEYSRVPKSVNAHHSRFMTGMLDSMSNQNVYWPRNLRSNFGEKTVRSDART 60

Query: 61 IPRLFHYL 69
          IPRLFHYL
Sbjct: 61 IPRLFHYL 68

[Close]
BLAST of CSPI07G09320.1 vs. NCBI nr
Match: gi|659094509|ref|XP_008448099.1| (PREDICTED: uncharacterized protein At4g26485-like [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 3.2e-24
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1   MQDHQPWLEPEYTRVPKSVNAHHSRFMTGMLDSMSNQNVYWPRNLRSNFGEKTVRSDART 60
           MQDHQPWLEPEY+RVP+SVNAH+ RFMTGML+SMSN+NVYW  NLRSNFGE+TVRSDART
Sbjct: 280 MQDHQPWLEPEYSRVPQSVNAHN-RFMTGMLESMSNKNVYWSSNLRSNFGEETVRSDART 339

Query: 61  IPRLFHYL 69
           I R F YL
Sbjct: 340 IRRSFQYL 346

The following BLAST results are available for this feature:
BLAST of CSPI07G09320.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G09320.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K599_CUCSA3.5e-3398.53Uncharacterized protein OS=Cucumis sativus GN=Csa_7G193740 PE=4 SV=1[more]
BLAST of CSPI07G09320.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G09320.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188881|gb|KGN44114.1|5.0e-3398.53hypothetical protein Csa_7G193740 [Cucumis sativus][more]
gi|659094509|ref|XP_008448099.1|3.2e-2482.35PREDICTED: uncharacterized protein At4g26485-like [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI07G09320CSPI07G09320gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI07G09320.1CSPI07G09320.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G09320.1.cds1CSPI07G09320.1.cds1CDS