CSPI06G31540.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G31540.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 26801640 .. 26802183 (-)
Sequence length	507

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCATCCAAGTTTGAATTTTGAAACAGATAAATCAGAATGAAGAGCGAAAGGGGAAGTGGGGTTCTTTTGTTTCTTGGAATTGTGTTGATCAGCATTTACTTGGTTGAGGTTGAGGTTGAGGGGAAAGAGGTGAAGAGTTTTAAAATAAACGAGAGTGTTGGTAGTACATCCAATGGATGGTCTGATTTGAATGAAAGCCTAAGGGGAAGAAATATGACTATTAGTGGCGGCAAGGGTGGGCGGAACTCATCGGGTGAGGGCCACGGAGGTGGTGGTGGAGGAGGGGGAAGTGATGTTGGGGTGAGAAAGAAAGATACAAAACATAATAAGAAGCATGGAAAAAGCGGAAATGGTGGTGGTGGGGGCAATGGTGGCGGTGGAGGTGGAGGCGGCGCGGGCGGAGGTGGTGGAGGTGGAGGGGGAGGGGGAAATGGGAAAGGGTATGGATGGGGAGGAGGTAGTGGAGGTGGTGTTGAGAACTATTTCTACTGTGTTTTGGACGAAGTGTTGCATGCTCAATATCCATTTAAACGACATGCTTGA

mRNA sequence

ATGAAGAGCGAAAGGGGAAGTGGGGTTCTTTTGTTTCTTGGAATTGTGTTGATCAGCATTTACTTGGTTGAGGTTGAGGTTGAGGGGAAAGAGGTGAAGAGTTTTAAAATAAACGAGAGTGTTGGTAGTACATCCAATGGATGGTCTGATTTGAATGAAAGCCTAAGGGGAAGAAATATGACTATTAGTGGCGGCAAGGGTGGGCGGAACTCATCGGGTGAGGGCCACGGAGGTGGTGGTGGAGGAGGGGGAAGTGATGTTGGGGTGAGAAAGAAAGATACAAAACATAATAAGAAGCATGGAAAAAGCGGAAATGGTGGTGGTGGGGGCAATGGTGGCGGTGGAGGTGGAGGCGGCGCGGGCGGAGGTGGTGGAGGTGGAGGGGGAGGGGGAAATGGGAAAGGGTATGGATGGGGAGGAGGTAGTGGAGGTGGTGTTGAGAACTATTTCTACTGTGTTTTGGACGAAGTGTTGCATGCTCAATATCCATTTAAACGACATGCTTGA

Coding sequence (CDS)

ATGAAGAGCGAAAGGGGAAGTGGGGTTCTTTTGTTTCTTGGAATTGTGTTGATCAGCATTTACTTGGTTGAGGTTGAGGTTGAGGGGAAAGAGGTGAAGAGTTTTAAAATAAACGAGAGTGTTGGTAGTACATCCAATGGATGGTCTGATTTGAATGAAAGCCTAAGGGGAAGAAATATGACTATTAGTGGCGGCAAGGGTGGGCGGAACTCATCGGGTGAGGGCCACGGAGGTGGTGGTGGAGGAGGGGGAAGTGATGTTGGGGTGAGAAAGAAAGATACAAAACATAATAAGAAGCATGGAAAAAGCGGAAATGGTGGTGGTGGGGGCAATGGTGGCGGTGGAGGTGGAGGCGGCGCGGGCGGAGGTGGTGGAGGTGGAGGGGGAGGGGGAAATGGGAAAGGGTATGGATGGGGAGGAGGTAGTGGAGGTGGTGTTGAGAACTATTTCTACTGTGTTTTGGACGAAGTGTTGCATGCTCAATATCCATTTAAACGACATGCTTGA

Homology

[Close]

BLAST of CSPI06G31540.1 vs. TrEMBL
Match: A0A0A0KGL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G504700 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.6e-47
Identity = 138/150 (92.00%), Postives = 138/150 (92.00%), Query Frame = 1


Query: 1   MKSERGSGVLLFLGIVLISIYLVEVEVEGKEVKSFKINESVGSTSNGWSDLNESLRGRNM 60
           MKSERGSGVLLFLGIVLISIYLVE    GKEVKSFKINESVGSTSNGWSDLNESLRGRNM
Sbjct: 1   MKSERGSGVLLFLGIVLISIYLVE----GKEVKSFKINESVGSTSNGWSDLNESLRGRNM 60

Query: 61  TISGGKGGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGN----GGGGGNGGGGG 120
           TISGGKGGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGN    GGGGGNGGGGG
Sbjct: 61  TISGGKGGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGNGGGGGGGGGNGGGGG 120

Query: 121 GGGAGGGGGGGGGGGNGKGYGWGGGSGGGV 147
           GGGAGGGGGGGGGGGNGKGYGWGG    GV
Sbjct: 121 GGGAGGGGGGGGGGGNGKGYGWGGVVEDGV 146

[Close]

BLAST of CSPI06G31540.1 vs. NCBI nr
Match: gi|700193686|gb|KGN48890.1| (hypothetical protein Csa_6G504700 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 2.3e-47
Identity = 138/150 (92.00%), Postives = 138/150 (92.00%), Query Frame = 1


Query: 1   MKSERGSGVLLFLGIVLISIYLVEVEVEGKEVKSFKINESVGSTSNGWSDLNESLRGRNM 60
           MKSERGSGVLLFLGIVLISIYLVE    GKEVKSFKINESVGSTSNGWSDLNESLRGRNM
Sbjct: 1   MKSERGSGVLLFLGIVLISIYLVE----GKEVKSFKINESVGSTSNGWSDLNESLRGRNM 60

Query: 61  TISGGKGGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGN----GGGGGNGGGGG 120
           TISGGKGGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGN    GGGGGNGGGGG
Sbjct: 61  TISGGKGGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGNGGGGGGGGGNGGGGG 120

Query: 121 GGGAGGGGGGGGGGGNGKGYGWGGGSGGGV 147
           GGGAGGGGGGGGGGGNGKGYGWGG    GV
Sbjct: 121 GGGAGGGGGGGGGGGNGKGYGWGGVVEDGV 146

The following BLAST results are available for this feature:

BLAST of CSPI06G31540.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G31540.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGL8_CUCSA	1.6e-47	92.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G504700 PE=4 SV=1	[more]

BLAST of CSPI06G31540.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G31540.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193686\|gb\|KGN48890.1\|	2.3e-47	92.00	hypothetical protein Csa_6G504700 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G31540	CSPI06G31540	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G31540.1	CSPI06G31540.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G31540.1.cds1	CSPI06G31540.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G31540.1.utr5p1	CSPI06G31540.1.utr5p1	five_prime_UTR