CSPI06G31540 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G31540
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 26801640 .. 26802183 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCATCCAAGTTTGAATTTTGAAACAGATAAATCAGAATGAAGAGCGAAAGGGGAAGTGGGGTTCTTTTGTTTCTTGGAATTGTGTTGATCAGCATTTACTTGGTTGAGGTTGAGGTTGAGGGGAAAGAGGTGAAGAGTTTTAAAATAAACGAGAGTGTTGGTAGTACATCCAATGGATGGTCTGATTTGAATGAAAGCCTAAGGGGAAGAAATATGACTATTAGTGGCGGCAAGGGTGGGCGGAACTCATCGGGTGAGGGCCACGGAGGTGGTGGTGGAGGAGGGGGAAGTGATGTTGGGGTGAGAAAGAAAGATACAAAACATAATAAGAAGCATGGAAAAAGCGGAAATGGTGGTGGTGGGGGCAATGGTGGCGGTGGAGGTGGAGGCGGCGCGGGCGGAGGTGGTGGAGGTGGAGGGGGAGGGGGAAATGGGAAAGGGTATGGATGGGGAGGAGGTAGTGGAGGTGGTGTTGAGAACTATTTCTACTGTGTTTTGGACGAAGTGTTGCATGCTCAATATCCATTTAAACGACATGCTTGA

mRNA sequence

ATGAAGAGCGAAAGGGGAAGTGGGGTTCTTTTGTTTCTTGGAATTGTGTTGATCAGCATTTACTTGGTTGAGGTTGAGGTTGAGGGGAAAGAGGTGAAGAGTTTTAAAATAAACGAGAGTGTTGGTAGTACATCCAATGGATGGTCTGATTTGAATGAAAGCCTAAGGGGAAGAAATATGACTATTAGTGGCGGCAAGGGTGGGCGGAACTCATCGGGTGAGGGCCACGGAGGTGGTGGTGGAGGAGGGGGAAGTGATGTTGGGGTGAGAAAGAAAGATACAAAACATAATAAGAAGCATGGAAAAAGCGGAAATGGTGGTGGTGGGGGCAATGGTGGCGGTGGAGGTGGAGGCGGCGCGGGCGGAGGTGGTGGAGGTGGAGGGGGAGGGGGAAATGGGAAAGGGTATGGATGGGGAGGAGGTAGTGGAGGTGGTGTTGAGAACTATTTCTACTGTGTTTTGGACGAAGTGTTGCATGCTCAATATCCATTTAAACGACATGCTTGA

Coding sequence (CDS)

ATGAAGAGCGAAAGGGGAAGTGGGGTTCTTTTGTTTCTTGGAATTGTGTTGATCAGCATTTACTTGGTTGAGGTTGAGGTTGAGGGGAAAGAGGTGAAGAGTTTTAAAATAAACGAGAGTGTTGGTAGTACATCCAATGGATGGTCTGATTTGAATGAAAGCCTAAGGGGAAGAAATATGACTATTAGTGGCGGCAAGGGTGGGCGGAACTCATCGGGTGAGGGCCACGGAGGTGGTGGTGGAGGAGGGGGAAGTGATGTTGGGGTGAGAAAGAAAGATACAAAACATAATAAGAAGCATGGAAAAAGCGGAAATGGTGGTGGTGGGGGCAATGGTGGCGGTGGAGGTGGAGGCGGCGCGGGCGGAGGTGGTGGAGGTGGAGGGGGAGGGGGAAATGGGAAAGGGTATGGATGGGGAGGAGGTAGTGGAGGTGGTGTTGAGAACTATTTCTACTGTGTTTTGGACGAAGTGTTGCATGCTCAATATCCATTTAAACGACATGCTTGA
Homology
[Close]
BLAST of CSPI06G31540 vs. TrEMBL
Match: A0A0A0KGL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G504700 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.6e-47
Identity = 138/150 (92.00%), Postives = 138/150 (92.00%), Query Frame = 1 

Query: 1   MKSERGSGVLLFLGIVLISIYLVEVEVEGKEVKSFKINESVGSTSNGWSDLNESLRGRNM 60
           MKSERGSGVLLFLGIVLISIYLVE    GKEVKSFKINESVGSTSNGWSDLNESLRGRNM
Sbjct: 1   MKSERGSGVLLFLGIVLISIYLVE----GKEVKSFKINESVGSTSNGWSDLNESLRGRNM 60

Query: 61  TISGGKGGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGN----GGGGGNGGGGG 120
           TISGGKGGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGN    GGGGGNGGGGG
Sbjct: 61  TISGGKGGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGNGGGGGGGGGNGGGGG 120

Query: 121 GGGAGGGGGGGGGGGNGKGYGWGGGSGGGV 147
           GGGAGGGGGGGGGGGNGKGYGWGG    GV
Sbjct: 121 GGGAGGGGGGGGGGGNGKGYGWGGVVEDGV 146

[Close]
BLAST of CSPI06G31540 vs. NCBI nr
Match: gi|700193686|gb|KGN48890.1| (hypothetical protein Csa_6G504700 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 2.3e-47
Identity = 138/150 (92.00%), Postives = 138/150 (92.00%), Query Frame = 1 

Query: 1   MKSERGSGVLLFLGIVLISIYLVEVEVEGKEVKSFKINESVGSTSNGWSDLNESLRGRNM 60
           MKSERGSGVLLFLGIVLISIYLVE    GKEVKSFKINESVGSTSNGWSDLNESLRGRNM
Sbjct: 1   MKSERGSGVLLFLGIVLISIYLVE----GKEVKSFKINESVGSTSNGWSDLNESLRGRNM 60

Query: 61  TISGGKGGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGN----GGGGGNGGGGG 120
           TISGGKGGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGN    GGGGGNGGGGG
Sbjct: 61  TISGGKGGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGNGGGGGGGGGNGGGGG 120

Query: 121 GGGAGGGGGGGGGGGNGKGYGWGGGSGGGV 147
           GGGAGGGGGGGGGGGNGKGYGWGG    GV
Sbjct: 121 GGGAGGGGGGGGGGGNGKGYGWGGVVEDGV 146

The following BLAST results are available for this feature:
BLAST of CSPI06G31540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G31540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGL8_CUCSA1.6e-4792.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G504700 PE=4 SV=1[more]
BLAST of CSPI06G31540 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G31540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193686|gb|KGN48890.1|2.3e-4792.00hypothetical protein Csa_6G504700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G31540.1CSPI06G31540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G31540Csa6G504700Cucumber (Chinese Long) v2cpicuB313
CSPI06G31540CsaV3_6G046860Cucumber (Chinese Long) v3cpicucB363
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G31540Wax gourdcpiwgoB634
CSPI06G31540Wild cucumber (PI 183967)cpicpiB077
CSPI06G31540Wild cucumber (PI 183967)cpicpiB127
CSPI06G31540Wild cucumber (PI 183967)cpicpiB163
CSPI06G31540Watermelon (97103) v1cpiwmB519
CSPI06G31540Cucumber (Gy14) v1cgycpiB028
CSPI06G31540Cucumber (Gy14) v1cgycpiB247
CSPI06G31540Cucumber (Gy14) v1cgycpiB510
CSPI06G31540Cucurbita maxima (Rimu)cmacpiB203
CSPI06G31540Cucurbita maxima (Rimu)cmacpiB689
CSPI06G31540Cucurbita maxima (Rimu)cmacpiB893
CSPI06G31540Cucurbita moschata (Rifu)cmocpiB026
CSPI06G31540Cucurbita moschata (Rifu)cmocpiB185
CSPI06G31540Cucurbita moschata (Rifu)cmocpiB681
CSPI06G31540Cucurbita moschata (Rifu)cmocpiB802
CSPI06G31540Cucurbita moschata (Rifu)cmocpiB873
CSPI06G31540Cucumber (Chinese Long) v2cpicuB271
CSPI06G31540Cucumber (Chinese Long) v2cpicuB285
CSPI06G31540Cucumber (Chinese Long) v2cpicuB302
CSPI06G31540Melon (DHL92) v3.5.1cpimeB478
CSPI06G31540Melon (DHL92) v3.5.1cpimeB488
CSPI06G31540Melon (DHL92) v3.5.1cpimeB504
CSPI06G31540Melon (DHL92) v3.5.1cpimeB508
CSPI06G31540Watermelon (Charleston Gray)cpiwcgB453
CSPI06G31540Watermelon (Charleston Gray)cpiwcgB515
CSPI06G31540Watermelon (Charleston Gray)cpiwcgB539
CSPI06G31540Watermelon (97103) v1cpiwmB489
CSPI06G31540Watermelon (97103) v1cpiwmB499
CSPI06G31540Watermelon (97103) v1cpiwmB513
CSPI06G31540Cucurbita pepo (Zucchini)cpecpiB080
CSPI06G31540Cucurbita pepo (Zucchini)cpecpiB288
CSPI06G31540Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G31540Cucurbita pepo (Zucchini)cpecpiB586
CSPI06G31540Cucurbita pepo (Zucchini)cpecpiB849
CSPI06G31540Bottle gourd (USVL1VR-Ls)cpilsiB412
CSPI06G31540Bottle gourd (USVL1VR-Ls)cpilsiB439
CSPI06G31540Bottle gourd (USVL1VR-Ls)cpilsiB458
CSPI06G31540Bottle gourd (USVL1VR-Ls)cpilsiB493
CSPI06G31540Melon (DHL92) v3.6.1cpimedB468
CSPI06G31540Melon (DHL92) v3.6.1cpimedB474
CSPI06G31540Melon (DHL92) v3.6.1cpimedB490
CSPI06G31540Melon (DHL92) v3.6.1cpimedB493
CSPI06G31540Cucumber (Gy14) v2cgybcpiB078
CSPI06G31540Cucumber (Gy14) v2cgybcpiB287
CSPI06G31540Silver-seed gourdcarcpiB0446
CSPI06G31540Silver-seed gourdcarcpiB0794
CSPI06G31540Silver-seed gourdcarcpiB1019
CSPI06G31540Cucumber (Chinese Long) v3cpicucB322
CSPI06G31540Cucumber (Chinese Long) v3cpicucB336
CSPI06G31540Watermelon (97103) v2cpiwmbB433
CSPI06G31540Watermelon (97103) v2cpiwmbB489
CSPI06G31540Watermelon (97103) v2cpiwmbB507
CSPI06G31540Watermelon (97103) v2cpiwmbB529