CSPI06G29540.2 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI06G29540.2
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionProtein BRICK 1
LocationChr6 : 25632394 .. 25638066 (-)
Sequence length231
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGAGAAGGAATTCAGAAAAAGAAAGAAAAAAGAAAATTCAATTCGAGTTTTGATGGGAGAGAGAGATTCGTGGTGTGCACATAACATAGTTTGGTGAAAATGGTAACCACAATAAACTCGCTTTCGGGTGGTGGTTTGTTTATGGTTATGCTATAATTGAAATTGAGAGCTCAACCCTTGCCTTCTCCTTCAACACCAATTTCAACCCATCTTCTTATCTCAGTTCGCGCCATACAGAAAGATCTCTTTCTCATGGCTAGAGCTGGCGGAATTACTAACGCTGTAAACGTAGGGATAGCGGTTCAAGCTGATTGGGAAAATCGCGAATTCATCTCTCATATTTCCATCAATGTCCGTCGTCTCTTTGATTTCCTCGTCCATTTCGGTACTCATCCCCTTTTCTCGCTCTCTCTCCTCGATTCTTAGATCTCTTCTATTATTAGAAATTTCCTCACTTGTTATAATTAGTTACCTTTTTCAATCCAAACTTTTAATATTTTCTTTATAAACTTGATAATTGAATCCCATCTCTTATTCTGGATTTATATCATTATTTTATCTTCTGGGATTTGATTAGCCGAGCACCATTTGCCCTATGATTTTTCAATCTCCGGCGATAGTTTTTCAGTAAGATTTTTTTTTTTTTTCAATTTTGAAGTCAGTATTGCTGTATATTTTACTTGGTCGGTTACTAATCATAGCAATATTCGGGTTTCTAATTCATGTCCTTGTTTCATTAGAGGCAACAACAAAGAGCAAGTTGGCATCTTTGAACGAGAAACTTGATACCCTGGAGAGGCGGCTTGAAATGCTTGAAGTCCAAGTCAGTACTGCATCTGCTAACTCATCTCTTTTTACCACTTAATGTTTACTTTACCTTGTATAAAAAGACATAGCTCCCTGTTATAGTTTTTGTCTTGTTTTCACTAGTGTAAACGAAATATGAGGATCTTGTGTAATGATTATGTGTACACATTGATGTTTAAAATCATATCTGTCTAGTGCTTTTATACTGATCTACTTGAATTCTAATTCATGTTGTGTGCTTCAAGGAATATGCACAATTAGGAATTTAGGATCATTTTTGTTTCCTTGACTCAACTAGCAAGTTGTTAAATCACACGAGTCTTTGGCGAAGGTTGTTGAAAATACCCCTGAAAGTTCTTTGGGTTATCTTGTCTTAAATTACCTCCACTCTTCATCAGTCCGTCCACCATAGCATCTCAAATTTGATCAAATAATTGTTTTAGCCTTTCCTATTGCATTTTCCTTGGCTAATTGATTGATCAAATAGTTGCTCTTAGCCTTTTTCTTAGGCCCTTAATATTATTCCTGGGTTCTCTATATATTTGATTCGTTGAAATATGCAAAACATAGCAAATGTTATTTTGTTGTCTTTGAACTTTTGGCGGATGCTCCAAACTCTTAGTAATCATAAATGAGCAGCTGTGACACGGGTGAAGACTCCACCAAGCTAATGTAGATACTAACCGGTAGGCCATGAAAAGGTAAACCTGAGGCATGATATTTGGCAAATAAGTGACTTCTATGCAAAATACCAATGAAGAAGTTCCTCAGAATTTAGTTTTTTTCAAATATTTGATCATCTCCAATGTTGAAATTGATTTGTTTGCATGCTTTATTATAGGATTTGATTTTTCGATAGCAATGCATTTAATTCATCCAAAATTAAGTTAAGAGAACTGAAAACCAGGATGAAAGAGAGGATGAACGAACGGGACCTAAAGAGGAACGTGAGCTGCCACGAATTATTATTCTGAGAGCGAATTTAGAATTGGAATATGGATATGCAGGTGACCCTGCATCATTTGAGAATGAATCTCCTAGGATATTATGGCTATGGACATAGTTTATTATAGCTCTTGAATTTGTTTTGTCCAAATTCAAAAACTTCGTTGCTGTTATTTTAACTTCGGTTTCTCCCAGGAAATTGAAAGTCATTTTTTACTGCAGTTTCACTGACGTAAGTAGAACTTGGTTTTCCAATACAAGAAAAAAAGAAGGAAAATGAAAGCAAATTTCACTCTGAATTAAATCAGCAATCTAATATAAGAACAAATGTATGAGCATATCCTTGGTTCTTCACTTCCTCTGGTTCTTGGATGCAAAACGAAGAATTAGGTAGAATAGTATCCTATAAAGCACGGCCCAAGCAAACATCACAGCCACATTTTCCCACTTTTTATCTGAATCGGTACTGATGTGAAGACTTTCCAATATGTTGATACCAGAAATATCAGTTCCATTTGATTGCTTCCCGAATGGAATGGAAGTTTGATACTCATTCATCAGCAGCCCTTCATATGGATATGTCATCGTGGAAATCTTGTTCATCCACTTCCAGTATGGAGGAATGTCGTGGCTGTTTAAGAAGTACCCACAAAACAAGAAAAAGAGGGCAGTGAAAGCAATCACAGCTGCATAACCCAAGATATAGTTTGGTACTACTGAGCTAATGAATACAACGAATGAGTTTGTTGAAAGCAGGGACATGTAGAGGACTATCAGAAAATATATGAAAGATCCCCGAAGTTTCAAAGCGAACCAAACTATCAAAGCATAAACCAGAGCTTGCAGGCCAAGAAAAGGCAGGTGAGTAATCAAACCAGCTATGGTGTAAGATGATGCTCTGTAGGCATTGTGGGAAGTTTCACGGATGAAAATGAAACGTTCTTGTATGAATGCTGGGACAGCATCATTGGAAGAGAAAAAGAAGAGACAGACGGTAAAGATGAAGAAGCTGAGACGGTCTGTAATTCCTTGGGTATTCTCTTTAGGTTTCAAGAACATTGTAGCCATCATAAATCCCATCACTGTCAGGACCATCAACCTTGAGAGGAACAGCTCGGGTGTTCGTGAGATGTTCTTGAAGTTTCTACGCATAAGAATCCAGGTCTCAGAGAAGAACGAGTTCGAAATCTTTTTTCCCATGTTATTATGTATGGGAACAGATTTTGAACCGATATTTGAAGTCAGGTAGTCATTTTCATTCACTGTGTAATCACTGCTATGAGGTGTTGGTGTGCCATTAAGAACATCAAATGAGTATGCATAAGAGGCCGAAGAATTACTGCAAATCAAGTAAAACTGAAGATTATAGTTCTCGGCTTTGATGCTGTATCAAATGGATGTTAATAGTAAAATAGTAATGAAATACAACTTTTAAGCATTGATTTGATGTACCTCATTTGATTACGATTTTTTGTTCCATCTTGTTGTCTATGTTGCAGCCTCGATGCCTGCATAACCACACTATTACTCGCACTCCATGATCTTGATGTGTTATAAGGGCTTCTCAAACTATGGTTAAAATCATTTAAAGCGCGAGTATTAGTTTGCAAATGGAGTCGTTTTCCAGTTACAAAGTTGCCAGAGTGAGAGGATGAAACCGGCGAGGATTGTATAGTAGATAGTGAAATCTCTTCATCAGTCAAGTGGGGTGGATTCGTTCCTGTCCTAGCAAACTCAGCTAGTGCCTCCACTCCAAATTCAGACTGATCATATGCTCGAATAACATCCATTAGATATTCAATTGGACTTTCCCCTTGAGGCACTTTTCGTCCCATTACAGTGAGATGGTGATTAACATCCTTTGATGGCCCTTGAAACATAAGCTGTCCTCGAGCAAGGATGATGAGATGGTCTAAGAATGATAGGATTCGTGATGATGGCTGGTGAATTGTAAGGACCACAGTGCTGCCAGTGCTCGCTATGTTATGAACCTTTTCAATGACACTATACGCACTGGTTGAGTCTAGTCCTGAAGTAGGCTCATCAAGGAAGAGCACTGATGGCCCATGGATGATGTCCACCCCAATCGATACTCTTCTACGTTCGCCGCCAGACACCCCTCTTGTTCCTTCATCTCCAATATAGGTGTTTCGAGCTGACTGCGATAGAACAACCAACCAATGATTTCATTGGTTAGATCTTGAAATATAACAAATACATTGAAAGGAAAAAAGCTAATGATCTGCTTACAGATAAGCCAAGTTGCTCAATCATGTTTTCCACTCGTTGCTTTTTTTCGTTCTTTGGAATTGGACCAAGCCGAAAGTCTGCTGCAAACATCAGAGTCTCATATACAGTGAGCTTTGGGAAGAGCCTGTCATCTTGCATGATATATGCAGAAGTTCTTTTAATCAAGCCTGGGCTCATTTCCATGCCATCCAAAGAAACTCTGCCCTTCAGGCTTCCACTTGCAATTCTTCCTGCTAGACCATCCAGAAAGGTAGATTTTCCAGCCCCACTGGGACCTAATACTGCAGTGATACTTCCTTTTGGTGCATACCCCGAAATCCTGTGCAACAAATCTACTTCTTGCTTCACCAGTTTCCCTTCATGTTCCTTGTCTTTTAACACAGTATAAGTAAGGTCAAAGAACTCAAGCCCACCATTAAACTTTGTCCGGTAACCACCACCATTGGCCATCTCTCCTGGTTAGTGTAGCAAGCTTTATAGAGAGAAAATTTAGAACACCATGCAGAAAGGGAGTTGAGAGACTTCCGGTTCGTTTTTTTTCCCCTTCTTTTGGGGGTCTCCCAATTTTTTGGCTTTAGGAAGCCGAAGAGGAGTTAAATGGAAACAATCAGCGTAGAAGTGGAGCAAAATCCTAAGCTATCCAATTCCATTCTTTGAAGAATCCGTACTAGATCGTATGGATCACAAAGAACTAGAAAACTTTCTTGTTTTCTTCGTCCAATTTTGGCTTATGCCTAGCGTTTGTGTTTTTAGCATACCAGCCCCCTGCTGTTTTTCATTCGAGTCCTTGTTAGGATTAACATCCCGACGACAGTTGGATTTGGAGTTTTGCCATTTCAACGTTTTGCTTCTGTCATCAGTGTCGTAAGAACCTGGATATTTATATGATCCCCAGTCTCATCCATTGTTGGATTGCGCATTTTTATATTTTCGAGCAGAGTTTTGTTGGAGATAGGAATCATAATCATCGATGATTGCCTTCTTGACTTGTGTTTAGATGTTGATTTGTATTGGATCTAAATTATTCTCCACGCTGTAATAAGGCCAACATGGCAACACCAAGATGATATATTACAAATGTTACCATTATTTACTTCCTATTTTTGATAAGTTATCATAATTTTCTTGATTTGACAAAAACAATAGTTCAGAAGTAAATCAAAATAAAGAATATAAACTTTCGTATGATTCTTGAAAACCTCCAACATTATTATATAAAATTGTCACATCTAATCCTACATACACTAAATTTATGCCTTACATAATGATAAATTTTGAAACAAAACAGAGTAAGGTTAGCTAGATGGCAAACAGACACCATGGATCACAGCACCAGCAGCATTGGTCAACAAGACAGCAGCAGCACAGAGCAGCAAGACTGAGAAATAAGATAGAGAGAAAATGTTAGGTTGTTATAAACATTAGGTTGGGGTTTAGATGATTGAAATTACCAAGCCTCCAGGCATCCGGGTCCCTGGGGAGGAGCGGCTGCATATTGTGGTGGCGCCACCACTGGAGGCGGCGGCGGCCCCTGATAGTAACCTTCACCGTAGTAAGGATAAGCATACTTGCCTTGGCTCATCTTTCACTTCATGCAGATCAAAACCCAGAGCAGATTTTATGTGATATTAGCATTTGGATTTGTGTTCGTTTGAATTAGAAAGAGA

mRNA sequence

ATGGCTAGAGCTGGCGGAATTACTAACGCTGTAAACGTAGGGATAGCGGTTCAAGCTGATTGGGAAAATCGCGAATTCATCTCTCATATTTCCATCAATGTCCGTCGTCTCTTTGATTTCCTCGTCCATTTCGAGGCAACAACAAAGAGCAAGTTGGCATCTTTGAACGAGAAACTTGATACCCTGGAGAGGCGGCTTGAAATGCTTGAAGTCCAAAGTAAGGTTAGCTAG

Coding sequence (CDS)

ATGGCTAGAGCTGGCGGAATTACTAACGCTGTAAACGTAGGGATAGCGGTTCAAGCTGATTGGGAAAATCGCGAATTCATCTCTCATATTTCCATCAATGTCCGTCGTCTCTTTGATTTCCTCGTCCATTTCGAGGCAACAACAAAGAGCAAGTTGGCATCTTTGAACGAGAAACTTGATACCCTGGAGAGGCGGCTTGAAATGCTTGAAGTCCAAAGTAAGGTTAGCTAG
Homology
[Close]
BLAST of CSPI06G29540.2 vs. Swiss-Prot
Match: BRK1_ARATH (Protein BRICK 1 OS=Arabidopsis thaliana GN=BRK1 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 7.5e-30
Identity = 66/72 (91.67%), Postives = 70/72 (97.22%), Query Frame = 1 

Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60
          MA+AGGITNAVNVGIAVQADWENREFISHIS+NVRRLF+FLV FE+TTKSKLASLNEKLD
Sbjct: 1  MAKAGGITNAVNVGIAVQADWENREFISHISLNVRRLFEFLVQFESTTKSKLASLNEKLD 60

Query: 61 TLERRLEMLEVQ 73
           LERRLEMLEVQ
Sbjct: 61 LLERRLEMLEVQ 72

[Close]
BLAST of CSPI06G29540.2 vs. Swiss-Prot
Match: BRK1_MAIZE (Protein BRICK1 OS=Zea mays GN=BRK1 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-26
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = 1 

Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60
          M R GG+ N VNVGIAVQADWENREFIS+IS+NVRRLFDFL+ FEATTKSKLASLNEKLD
Sbjct: 1  MGRGGGMGNPVNVGIAVQADWENREFISNISLNVRRLFDFLLRFEATTKSKLASLNEKLD 60

Query: 61 TLERRLEMLEVQ 73
           LER+LE+LEVQ
Sbjct: 61 ILERKLEVLEVQ 72

[Close]
BLAST of CSPI06G29540.2 vs. Swiss-Prot
Match: BRK1_ORYSJ (Probable protein BRICK1 OS=Oryza sativa subsp. japonica GN=Os02g0829900 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 8.6e-26
Identity = 62/74 (83.78%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 1  MARAGG--ITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEK 60
          MARAGG  + N VNVGIAVQADWENREFIS+IS+NVRRLFDFL+ FEATTKSKLASLNEK
Sbjct: 1  MARAGGHGMGNPVNVGIAVQADWENREFISNISLNVRRLFDFLLRFEATTKSKLASLNEK 60

Query: 61 LDTLERRLEMLEVQ 73
          LD LER+LE+LEVQ
Sbjct: 61 LDILERKLEVLEVQ 74

[Close]
BLAST of CSPI06G29540.2 vs. Swiss-Prot
Match: BRK1_DICDI (Protein BRICK1 OS=Dictyostelium discoideum GN=brk1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-09
Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 17 VQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLDTLERRLEMLEVQSK 75
          +Q DWE REFI  +SIN++++ +FL  FE +T++KL+ LNEKL  L+R+++ LE   K
Sbjct: 7  IQKDWEQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFK 64

[Close]
BLAST of CSPI06G29540.2 vs. Swiss-Prot
Match: BRK1B_XENLA (Probable protein BRICK1-B OS=Xenopus laevis GN=brk1-b PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-08
Identity = 26/56 (46.43%), Postives = 42/56 (75.00%), Query Frame = 1 

Query: 17 VQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLDTLERRLEMLEVQ 73
          +  DW NRE+I  I+ +++++ DFL  F+ + +S+LA+LNEKL TLERR+E +E +
Sbjct: 12 IHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTTLERRIEYIEAR 67

[Close]
BLAST of CSPI06G29540.2 vs. TrEMBL
Match: A0A0A0KG45_CUCSA (Protein BRICK1 OS=Cucumis sativus GN=Csa_6G497300 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 8.1e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60

Query: 61 TLERRLEMLEVQ 73
          TLERRLEMLEVQ
Sbjct: 61 TLERRLEMLEVQ 72

[Close]
BLAST of CSPI06G29540.2 vs. TrEMBL
Match: W9S1C0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016117 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.6e-29
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 1 

Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHIS+NVRRLFDFLV FEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFDFLVQFEATTKSKLASLNEKLD 60

Query: 61 TLERRLEMLEVQ 73
          TLERRLE+LEVQ
Sbjct: 61 TLERRLELLEVQ 72

[Close]
BLAST of CSPI06G29540.2 vs. TrEMBL
Match: A0A118JUP3_CYNCS (Matrilin, coiled-coil trimerization domain-containing protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_005566 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.4e-29
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 1 

Query: 1   MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60
           MARAGGITNAVNVGIAVQADWENREFISHIS+NVR+LFDFLV FEATTKSKLASLNEKLD
Sbjct: 47  MARAGGITNAVNVGIAVQADWENREFISHISLNVRQLFDFLVQFEATTKSKLASLNEKLD 106

Query: 61  TLERRLEMLEVQ 73
           TLERRLEMLEVQ
Sbjct: 107 TLERRLEMLEVQ 118

[Close]
BLAST of CSPI06G29540.2 vs. TrEMBL
Match: A0A151TH51_CAJCA (Protein BRICK 1 OS=Cajanus cajan GN=KK1_012668 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.4e-29
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 1 

Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHIS+NVRRLFDFLV FEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFDFLVQFEATTKSKLASLNEKLD 60

Query: 61 TLERRLEMLEVQ 73
           LERRLEMLEVQ
Sbjct: 61 VLERRLEMLEVQ 72

[Close]
BLAST of CSPI06G29540.2 vs. TrEMBL
Match: B9SMK3_RICCO (Protein BRICK1, putative OS=Ricinus communis GN=RCOM_0230700 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.8e-29
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 1 

Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHIS+NVRRLFDFL+ FEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFDFLLQFEATTKSKLASLNEKLD 60

Query: 61 TLERRLEMLEVQ 73
          TLERRLE+LEVQ
Sbjct: 61 TLERRLELLEVQ 72

[Close]
BLAST of CSPI06G29540.2 vs. TAIR10
Match: AT2G22640.1 (AT2G22640.1 BRICK1, putative)

HSP 1 Score: 130.6 bits (327), Expect = 4.2e-31
Identity = 66/72 (91.67%), Postives = 70/72 (97.22%), Query Frame = 1 

Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60
          MA+AGGITNAVNVGIAVQADWENREFISHIS+NVRRLF+FLV FE+TTKSKLASLNEKLD
Sbjct: 1  MAKAGGITNAVNVGIAVQADWENREFISHISLNVRRLFEFLVQFESTTKSKLASLNEKLD 60

Query: 61 TLERRLEMLEVQ 73
           LERRLEMLEVQ
Sbjct: 61 LLERRLEMLEVQ 72

[Close]
BLAST of CSPI06G29540.2 vs. NCBI nr
Match: gi|449451369|ref|XP_004143434.1| (PREDICTED: protein BRICK 1 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-30
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60

Query: 61 TLERRLEMLEVQ 73
          TLERRLEMLEVQ
Sbjct: 61 TLERRLEMLEVQ 72

[Close]
BLAST of CSPI06G29540.2 vs. NCBI nr
Match: gi|703132443|ref|XP_010105126.1| (hypothetical protein L484_016117 [Morus notabilis])

HSP 1 Score: 135.6 bits (340), Expect = 3.7e-29
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 1 

Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHIS+NVRRLFDFLV FEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFDFLVQFEATTKSKLASLNEKLD 60

Query: 61 TLERRLEMLEVQ 73
          TLERRLE+LEVQ
Sbjct: 61 TLERRLELLEVQ 72

[Close]
BLAST of CSPI06G29540.2 vs. NCBI nr
Match: gi|976904719|gb|KVH92379.1| (Matrilin, coiled-coil trimerization domain-containing protein, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 135.2 bits (339), Expect = 4.9e-29
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 1 

Query: 1   MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60
           MARAGGITNAVNVGIAVQADWENREFISHIS+NVR+LFDFLV FEATTKSKLASLNEKLD
Sbjct: 47  MARAGGITNAVNVGIAVQADWENREFISHISLNVRQLFDFLVQFEATTKSKLASLNEKLD 106

Query: 61  TLERRLEMLEVQ 73
           TLERRLEMLEVQ
Sbjct: 107 TLERRLEMLEVQ 118

[Close]
BLAST of CSPI06G29540.2 vs. NCBI nr
Match: gi|1012355190|gb|KYP66377.1| (Protein BRICK 1 [Cajanus cajan])

HSP 1 Score: 134.8 bits (338), Expect = 6.4e-29
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 1 

Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHIS+NVRRLFDFLV FEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFDFLVQFEATTKSKLASLNEKLD 60

Query: 61 TLERRLEMLEVQ 73
           LERRLEMLEVQ
Sbjct: 61 VLERRLEMLEVQ 72

[Close]
BLAST of CSPI06G29540.2 vs. NCBI nr
Match: gi|255572577|ref|XP_002527222.1| (PREDICTED: protein BRICK 1 isoform X1 [Ricinus communis])

HSP 1 Score: 134.4 bits (337), Expect = 8.3e-29
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 1 

Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHIS+NVRRLFDFL+ FEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFDFLLQFEATTKSKLASLNEKLD 60

Query: 61 TLERRLEMLEVQ 73
          TLERRLE+LEVQ
Sbjct: 61 TLERRLELLEVQ 72

The following BLAST results are available for this feature:
BLAST of CSPI06G29540.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BRK1_ARATH7.5e-3091.67Protein BRICK 1 OS=Arabidopsis thaliana GN=BRK1 PE=1 SV=1[more]
BRK1_MAIZE2.3e-2683.33Protein BRICK1 OS=Zea mays GN=BRK1 PE=2 SV=1[more]
BRK1_ORYSJ8.6e-2683.78Probable protein BRICK1 OS=Oryza sativa subsp. japonica GN=Os02g0829900 PE=3 SV=... [more]
BRK1_DICDI1.5e-0948.28Protein BRICK1 OS=Dictyostelium discoideum GN=brk1 PE=1 SV=1[more]
BRK1B_XENLA1.2e-0846.43Probable protein BRICK1-B OS=Xenopus laevis GN=brk1-b PE=3 SV=1[more]
BLAST of CSPI06G29540.2 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KG45_CUCSA8.1e-31100.00Protein BRICK1 OS=Cucumis sativus GN=Csa_6G497300 PE=4 SV=1[more]
W9S1C0_9ROSA2.6e-2995.83Uncharacterized protein OS=Morus notabilis GN=L484_016117 PE=4 SV=1[more]
A0A118JUP3_CYNCS3.4e-2995.83Matrilin, coiled-coil trimerization domain-containing protein (Fragment) OS=Cyna... [more]
A0A151TH51_CAJCA4.4e-2995.83Protein BRICK 1 OS=Cajanus cajan GN=KK1_012668 PE=4 SV=1[more]
B9SMK3_RICCO5.8e-2994.44Protein BRICK1, putative OS=Ricinus communis GN=RCOM_0230700 PE=4 SV=1[more]
BLAST of CSPI06G29540.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G22640.14.2e-3191.67 BRICK1, putative[more]
BLAST of CSPI06G29540.2 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451369|ref|XP_004143434.1|1.2e-30100.00PREDICTED: protein BRICK 1 [Cucumis sativus][more]
gi|703132443|ref|XP_010105126.1|3.7e-2995.83hypothetical protein L484_016117 [Morus notabilis][more]
gi|976904719|gb|KVH92379.1|4.9e-2995.83Matrilin, coiled-coil trimerization domain-containing protein, partial [Cynara c... [more]
gi|1012355190|gb|KYP66377.1|6.4e-2995.83Protein BRICK 1 [Cajanus cajan][more]
gi|255572577|ref|XP_002527222.1|8.3e-2994.44PREDICTED: protein BRICK 1 isoform X1 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR019466Matrilin, coiled-coil trimerisation domain
Vocabulary: Biological Process
TermDefinition
GO:0007015actin filament organization
Vocabulary: Cellular Component
TermDefinition
GO:0031209SCAR complex
Vocabulary: Molecular Function
TermDefinition
GO:0032403protein complex binding
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007015 actin filament organization
biological_process GO:0045010 actin nucleation
biological_process GO:0051259 protein oligomerization
biological_process GO:0010090 trichome morphogenesis
cellular_component GO:0031209 SCAR complex
cellular_component GO:0005886 plasma membrane
molecular_function GO:0032403 protein complex binding
molecular_function GO:0042802 identical protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI06G29540CSPI06G29540gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI06G29540.2CSPI06G29540.2-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G29540.2.utr3p1CSPI06G29540.2.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G29540.2.cds3CSPI06G29540.2.cds3CDS
CSPI06G29540.2.cds2CSPI06G29540.2.cds2CDS
CSPI06G29540.2.cds1CSPI06G29540.2.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G29540.2.utr5p1CSPI06G29540.2.utr5p1five_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019466Matrilin, coiled-coil trimerisation domainGENE3DG3DSA:1.20.5.30coord: 41..71
score: 7.
NoneNo IPR availableunknownCoilCoilcoord: 45..72
scor