CSPI06G25340.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G25340.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	60S acidic ribosomal protein family
Location	Chr6 : 22566221 .. 22567276 (-)
Sequence length	378

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTCCTTGAAGATCCAAAATCCTCTGTCTTCCATCCGTATGTTCTTCTTCAACTTCCTCCCTTTCTCTCTTCTTCGTCTTTGATTCCAACTCTTTCTTTTCCTTTTAAATATTTGCAGACATGAAGATCGTTGCGGCTTATTTGTTGGCTATTTTGGGCGGAAACACTCACCCTTCCATTCACGACATTAAAGCCATTCTCGCCTCTGGTAATTTCCACTTCCCTTCCAACTCTTTAATTTCGACATTCTTCTTTTTTTCTTTTTTTTTTCCCGTTTCATTGCTCTGTAAATTAATTAATCGTGTTAATCAAACAACAGAGTAAGAGTATTTAGGTTTAGGTTTTGTTCTGGTGCATTGCTTTTTGTGGAATTCTTGAATTGAAATTGAATTAATTACAGTTGGAGTTGAGGCCGAAGATGAAAGAATCGAGTTGCTTCTTTCACAAGTTAAGGGTAAAGATGTTGCAGAGCTTGTAGCTTGTGGGAGGGAGAAGATGGCATGTGTTCCATGTGGTGGTTCTGCCATTCCTGTAGCTGCCGGCAGTGATAGTGGCGGGGGGGGGGGCCNNNNNNNNNNNNNNNNNNNTGGTGCTGCCGCCGCTGTTGTTGCGGCCGAGCCTGTCAAAGAGGACAAGAAAGAAGTTGTTGAAGAATCTGATGAAGTAATTAACTTTATTTTCTTCTTTATTATCTCAACTAATTCATTCATATCTACTTCAATATTATGGCTAAATTATAGGTAGCACTACAAATTGCAAATATAACAATTATACGATCTACTAAACTATCTTTTATCAACTGGGGAAGTAAAATTGTCTAAGCTTAAATACAATATCTTCATATGGTTATTTTTTATTCTATTCATATAATTAGGGTTAGGGTTTTAAACTTGTATCATTCATCTAACCAAAGTTGTTTTTGTTTCTTTGTGTTTGCGTTGATGCAGGATATGTGCTTCAGTCTTTTTGATTGACGAGATTTATTTGTGTCCTTCACCTTTCAAAGTTTGATCAACTTTAGTTTAGATTCATTTTAAATTGATATATATACCCTGC

mRNA sequence

ATGAAGATCGTTGCGGCTTATTTGTTGGCTATTTTGGGCGGAAACACTCACCCTTCCATTCACGACATTAAAGCCATTCTCGCCTCTGTTGGAGTTGAGGCCGAAGATGAAAGAATCGAGTTGCTTCTTTCACAAGTTAAGGGTAAAGATGTTGCAGAGCTTGTAGCTTGTGGGAGGGAGAAGATGGCATGTGTTCCATGTGGTGGTTCTGCCATTCCTGTAGCTGCCGGCAGTGATAGTGGCGGGGGGGGGGGCCNNNNNNNNNNNNNNNNNNNTGGTGCTGCCGCCGCTGTTGTTGCGGCCGAGCCTGTCAAAGAGGACAAGAAAGAAGTTGTTGAAGAATCTGATGAAGATATGTGCTTCAGTCTTTTTGATTGA

Coding sequence (CDS)

ATGAAGATCGTTGCGGCTTATTTGTTGGCTATTTTGGGCGGAAACACTCACCCTTCCATTCACGACATTAAAGCCATTCTCGCCTCTGTTGGAGTTGAGGCCGAAGATGAAAGAATCGAGTTGCTTCTTTCACAAGTTAAGGGTAAAGATGTTGCAGAGCTTGTAGCTTGTGGGAGGGAGAAGATGGCATGTGTTCCATGTGGTGGTTCTGCCATTCCTGTAGCTGCCGGCAGTGATAGTGGCGGGGGGGGGGGCCNNNNNNNNNNNNNNNNNNNTGGTGCTGCCGCCGCTGTTGTTGCGGCCGAGCCTGTCAAAGAGGACAAGAAAGAAGTTGTTGAAGAATCTGATGAAGATATGTGCTTCAGTCTTTTTGATTGA

Homology

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BLAST of CSPI06G25340.1 vs. Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-27
Identity = 72/125 (57.60%), Postives = 92/125 (73.60%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK++AA+LLA+LGGNT P+  D+K+ILASVG +A+D++IELLLSQVKGKD+ EL+A GRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           ++A VP GG    VA  + +GGGGG         A A  A EP KE+K E  EESDE++ 
Sbjct: 61  RLASVPSGGG---VAVAAAAGGGGGD--------APAAAAEEPKKEEKSE--EESDEELG 112

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 112

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BLAST of CSPI06G25340.1 vs. Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 9.7e-27
Identity = 69/125 (55.20%), Postives = 83/125 (66.40%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK VAAYLLA+L GN  PS  D+ AIL SVG E ++E++ELLLSQ+ GKD+ EL+A GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K A VPCGG  + VAA + + GG             A  AAE  KE+K E  EESD+DM 
Sbjct: 61  KFASVPCGGGGVAVAAAAPAAGG-------------AAPAAEAKKEEKVEEKEESDDDMG 112

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 112

[Close]

BLAST of CSPI06G25340.1 vs. Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 9.7e-27
Identity = 73/125 (58.40%), Postives = 86/125 (68.80%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+L G   P+  DIK IL SVG E ED +IELLL +VKGKD+AEL+A GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG      A + SGGGGG       G A+   AAE  KE+KKE  EESD+DM 
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGG-------GGAS---AAESKKEEKKEEKEESDDDMG 115

Query: 121 FSLFD 126
           FSLF+
Sbjct: 121 FSLFE 115

[Close]

BLAST of CSPI06G25340.1 vs. Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-26
Identity = 70/125 (56.00%), Postives = 83/125 (66.40%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAA+LLA+L G   P+  DIK IL SVG E ED +IELLL +VKGKD+AEL+A GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG      A + SGGGGG              AAE  KE+KKE  EESD+DM 
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGG----------GGAPAAESKKEEKKEEKEESDDDMG 115

Query: 121 FSLFD 126
           FSLF+
Sbjct: 121 FSLFE 115

[Close]

BLAST of CSPI06G25340.1 vs. Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-25
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK++AAYLLA+LGGNT P+  D+K+IL SVG EA++E++E LL+++K KD+ E++A GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           +++ VP GG AI + A +   GGG            A  A E  KE+K E  EESDEDM 
Sbjct: 61  RLSSVPSGGGAIDMGAPAAVAGGG------------AAPAEEAKKEEKVEEKEESDEDMG 113

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 113

[Close]

BLAST of CSPI06G25340.1 vs. TrEMBL
Match: A0A0A0KKF6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G451490 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.3e-51
Identity = 115/125 (92.00%), Postives = 115/125 (92.00%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE
Sbjct: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           KMACVPCGGSAIPVAAGSDSGG          GAAAAVVAAEPVKEDKKEVVEESDEDMC
Sbjct: 61  KMACVPCGGSAIPVAAGSDSGG----------GAAAAVVAAEPVKEDKKEVVEESDEDMC 115

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 115

[Close]

BLAST of CSPI06G25340.1 vs. TrEMBL
Match: S8D2Z2_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00658 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 81/126 (64.29%), Postives = 94/126 (74.60%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+LGGN+ P+  D+K IL SVG +A+DERIELLLSQVKGKD+ EL+A GRE
Sbjct: 3   MKVVAAYLLAVLGGNSSPTAEDLKDILGSVGADADDERIELLLSQVKGKDITELIASGRE 62

Query: 61  KMACVPC-GGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDM 120
           K+A VP  GG A+ VAA    GGGGG       GAAAA  AAE  KE+K E  EESD+DM
Sbjct: 63  KLASVPAGGGGAVAVAAPVGGGGGGG-------GAAAAPAAAEAKKEEKVEEKEESDDDM 121

Query: 121 CFSLFD 126
            FSLFD
Sbjct: 123 GFSLFD 121

[Close]

BLAST of CSPI06G25340.1 vs. TrEMBL
Match: A0A0D2P4V1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G008900 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.3e-29
Identity = 77/125 (61.60%), Postives = 90/125 (72.00%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+LGGN  PS  D+K IL SVG EA+D+RIELLLS+VKGKD+ EL+A GRE
Sbjct: 69  MKVVAAYLLAVLGGNASPSADDLKVILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 128

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG A+ VAA +  GGGGG           A  AAE  KE+K E  EESD+DM 
Sbjct: 129 KLASVPSGGGAVAVAAPAAGGGGGG-----------AAPAAEAKKEEKVEEKEESDDDMG 182

Query: 121 FSLFD 126
           FSLFD
Sbjct: 189 FSLFD 182

[Close]

BLAST of CSPI06G25340.1 vs. TrEMBL
Match: A0A061GVH2_THECC (60S acidic ribosomal protein P2B, putative isoform 1 OS=Theobroma cacao GN=TCM_041470 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.3e-29
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK++AAYLLA+LGGN +PS  D+K IL SVG EA+D+RIELLLS+VKGKD+ EL+A GRE
Sbjct: 1   MKVIAAYLLAVLGGNANPSADDLKDILGSVGAEADDDRIELLLSEVKGKDITELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VPCGG A+ VA  +  GGGG            A  AAE  KE+K E  EESD+DM 
Sbjct: 61  KLASVPCGGGAVAVAVPAAGGGGG------------AAPAAEAKKEEKVEEKEESDDDMG 113

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 113

[Close]

BLAST of CSPI06G25340.1 vs. TrEMBL
Match: A0A0D2QPN4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G009000 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.6e-29
Identity = 77/125 (61.60%), Postives = 90/125 (72.00%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+LGGN  PS  D+K IL SVG EA+D+RIELLLS+VKGKD+ EL+A GRE
Sbjct: 1   MKVVAAYLLAVLGGNASPSADDLKVILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG A+ VAA +  GGGG           AA  AAE  KE+K E  EESD+DM 
Sbjct: 61  KLASVPSGGGAVAVAAPTAGGGGG-----------AAAPAAEAKKEEKVEEKEESDDDMG 114

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 114

[Close]

BLAST of CSPI06G25340.1 vs. TAIR10
Match: AT2G27710.1 (AT2G27710.1 60S acidic ribosomal protein family)

HSP 1 Score: 120.9 bits (302), Expect = 5.5e-28
Identity = 73/125 (58.40%), Postives = 86/125 (68.80%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+L G   P+  DIK IL SVG E ED +IELLL +VKGKD+AEL+A GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG      A + SGGGGG       G A+   AAE  KE+KKE  EESD+DM 
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGG-------GGAS---AAESKKEEKKEEKEESDDDMG 115

Query: 121 FSLFD 126
           FSLF+
Sbjct: 121 FSLFE 115

[Close]

BLAST of CSPI06G25340.1 vs. TAIR10
Match: AT3G44590.2 (AT3G44590.2 60S acidic ribosomal protein family)

HSP 1 Score: 108.6 bits (270), Expect = 2.8e-24
Identity = 66/125 (52.80%), Postives = 83/125 (66.40%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+ AA+LLA+LGGN +PS  +IK I+ +VG + + E IELLL +V GKD+AEL+A GRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG  + V+A   SGGGG            A   AE  KE KKE  EESD+DM 
Sbjct: 61  KLASVPSGGG-VAVSAAPSSGGGG------------AAAPAEK-KEAKKEEKEESDDDMG 111

Query: 121 FSLFD 126
           FSLF+
Sbjct: 121 FSLFE 111

[Close]

BLAST of CSPI06G25340.1 vs. TAIR10
Match: AT2G27720.2 (AT2G27720.2 60S acidic ribosomal protein family)

HSP 1 Score: 107.5 bits (267), Expect = 6.3e-24
Identity = 69/140 (49.29%), Postives = 82/140 (58.57%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILAS---------------VGVEAEDERIELLLSQ 60
           MK+VAA+LLA+L G   P+  DIK IL S                G E ED +IELLL +
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIGDCFGAETEDSQIELLLKE 60

Query: 61  VKGKDVAELVACGREKMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVK 120
           VKGKD+AEL+A GREK+A VP GG      A + SGGGGG              AAE  K
Sbjct: 61  VKGKDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGG----------GGAPAAESKK 120

Query: 121 EDKKEVVEESDEDMCFSLFD 126
           E+KKE  EESD+DM FSLF+
Sbjct: 121 EEKKEEKEESDDDMGFSLFE 130

[Close]

BLAST of CSPI06G25340.1 vs. TAIR10
Match: AT3G28500.1 (AT3G28500.1 60S acidic ribosomal protein family)

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-20
Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK++AA+LLA LGGN +P+ +D+K IL SVG E ++ +I+LL S +K  DV EL+A GRE
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDE 118
           KM+ +  GG A+ + AG   GGGGG           A  AAEPV E KK+V E  DE
Sbjct: 61  KMSALSSGGPAVAMVAG---GGGGG-----------AASAAEPVAESKKKVEEVKDE 103

[Close]

BLAST of CSPI06G25340.1 vs. TAIR10
Match: AT5G40040.1 (AT5G40040.1 60S acidic ribosomal protein family)

HSP 1 Score: 94.7 bits (234), Expect = 4.2e-20
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA L GN +PS+ D+K I+ SVG E + E+I+L  S +K +DV EL+A GRE
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           KMA +  GG A+ VA    SGGGGG        A AA  A+   K+ ++E  E  D+   
Sbjct: 61  KMAALSSGGGAVAVA----SGGGGG-------AAPAAEPASVESKKKEEEKEESEDDGGM 114

Query: 121 FSLFD 126
            SLFD
Sbjct: 121 MSLFD 114

[Close]

BLAST of CSPI06G25340.1 vs. NCBI nr
Match: gi|778717440|ref|XP_004143310.2| (PREDICTED: 60S acidic ribosomal protein P2-like [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 3.3e-51
Identity = 115/125 (92.00%), Postives = 115/125 (92.00%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE
Sbjct: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           KMACVPCGGSAIPVAAGSDSGG          GAAAAVVAAEPVKEDKKEVVEESDEDMC
Sbjct: 61  KMACVPCGGSAIPVAAGSDSGG----------GAAAAVVAAEPVKEDKKEVVEESDEDMC 115

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 115

[Close]

BLAST of CSPI06G25340.1 vs. NCBI nr
Match: gi|672162810|ref|XP_008801232.1| (PREDICTED: 60S acidic ribosomal protein P2-like [Phoenix dactylifera])

HSP 1 Score: 139.0 bits (349), Expect = 5.5e-30
Identity = 82/125 (65.60%), Postives = 92/125 (73.60%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK++AAYLLA+LGGN +PS  D+K IL SVGVEA D+RIE LLS+VKGKD+ ELVACGRE
Sbjct: 1   MKVIAAYLLAVLGGNNNPSSDDLKDILGSVGVEAGDDRIEFLLSEVKGKDITELVACGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K A VP G  A+ VAA   SGGGG        GA AA  AAEP KE+K E  EESDEDM 
Sbjct: 61  KYASVPSGAGAMAVAA--PSGGGG--------GAVAAPAAAEPKKEEKVEEKEESDEDMG 115

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 115

[Close]

BLAST of CSPI06G25340.1 vs. NCBI nr
Match: gi|747093190|ref|XP_011094390.1| (PREDICTED: 60S acidic ribosomal protein P2-1-like [Sesamum indicum])

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29
Identity = 80/125 (64.00%), Postives = 94/125 (75.20%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+LGGN  PS  D+K IL+SVG EA+D+RIELLL+QVK KD+ EL+A GRE
Sbjct: 1   MKVVAAYLLAVLGGNATPSAGDLKDILSSVGAEADDDRIELLLTQVKNKDITELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG A+ VAA S +GGGGG         AAA  AAEP KE+K E  EESD+DM 
Sbjct: 61  KLASVPAGGGAVAVAA-STAGGGGG---------AAAPAAAEPKKEEKVEEKEESDDDMG 115

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 115

[Close]

BLAST of CSPI06G25340.1 vs. NCBI nr
Match: gi|527209363|gb|EPS74099.1| (hypothetical protein M569_00658, partial [Genlisea aurea])

HSP 1 Score: 137.5 bits (345), Expect = 1.6e-29
Identity = 81/126 (64.29%), Postives = 94/126 (74.60%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+LGGN+ P+  D+K IL SVG +A+DERIELLLSQVKGKD+ EL+A GRE
Sbjct: 3   MKVVAAYLLAVLGGNSSPTAEDLKDILGSVGADADDERIELLLSQVKGKDITELIASGRE 62

Query: 61  KMACVPC-GGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDM 120
           K+A VP  GG A+ VAA    GGGGG       GAAAA  AAE  KE+K E  EESD+DM
Sbjct: 63  KLASVPAGGGGAVAVAAPVGGGGGGG-------GAAAAPAAAEAKKEEKVEEKEESDDDM 121

Query: 121 CFSLFD 126
            FSLFD
Sbjct: 123 GFSLFD 121

[Close]

BLAST of CSPI06G25340.1 vs. NCBI nr
Match: gi|747062724|ref|XP_011077887.1| (PREDICTED: 60S acidic ribosomal protein P2B-like [Sesamum indicum])

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-29
Identity = 77/125 (61.60%), Postives = 91/125 (72.80%), Query Frame = 1


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK++AAYLLA+LGGN  PS  D+K IL SVG EA+D+RIELLL+QVKGKD+ EL+A GRE
Sbjct: 1   MKVIAAYLLAVLGGNASPSADDLKNILNSVGAEADDDRIELLLTQVKGKDITELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG A+ VAA +  GGG           AAA  AAEP KE+K E  EESD+DM 
Sbjct: 61  KLASVPAGGGAVAVAAPAAGGGG-----------AAAPAAAEPKKEEKVEEKEESDDDMG 114

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 114

The following BLAST results are available for this feature:

BLAST of CSPI06G25340.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLA2_PARAR	1.2e-27	57.60	60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1	[more]
RLA2A_MAIZE	9.7e-27	55.20	60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3	[more]
RLA22_ARATH	9.7e-27	58.40	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1	[more]
RLA21_ARATH	2.8e-26	56.00	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2	[more]
RLA2B_MAIZE	3.1e-25	51.20	60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1	[more]

BLAST of CSPI06G25340.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKF6_CUCSA	2.3e-51	92.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G451490 PE=3 SV=1	[more]
S8D2Z2_9LAMI	1.1e-29	64.29	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00658 PE=3 SV=1	[more]
A0A0D2P4V1_GOSRA	4.3e-29	61.60	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G008900 PE=3 SV=1	[more]
A0A061GVH2_THECC	4.3e-29	60.00	60S acidic ribosomal protein P2B, putative isoform 1 OS=Theobroma cacao GN=TCM_0...	[more]
A0A0D2QPN4_GOSRA	5.6e-29	61.60	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G009000 PE=3 SV=1	[more]

BLAST of CSPI06G25340.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27710.1	5.5e-28	58.40	60S acidic ribosomal protein family	[more]
AT3G44590.2	2.8e-24	52.80	60S acidic ribosomal protein family	[more]
AT2G27720.2	6.3e-24	49.29	60S acidic ribosomal protein family	[more]
AT3G28500.1	2.5e-20	49.57	60S acidic ribosomal protein family	[more]
AT5G40040.1	4.2e-20	48.00	60S acidic ribosomal protein family	[more]

BLAST of CSPI06G25340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778717440\|ref\|XP_004143310.2\|	3.3e-51	92.00	PREDICTED: 60S acidic ribosomal protein P2-like [Cucumis sativus]	[more]
gi\|672162810\|ref\|XP_008801232.1\|	5.5e-30	65.60	PREDICTED: 60S acidic ribosomal protein P2-like [Phoenix dactylifera]	[more]
gi\|747093190\|ref\|XP_011094390.1\|	1.2e-29	64.00	PREDICTED: 60S acidic ribosomal protein P2-1-like [Sesamum indicum]	[more]
gi\|527209363\|gb\|EPS74099.1\|	1.6e-29	64.29	hypothetical protein M569_00658, partial [Genlisea aurea]	[more]
gi\|747062724\|ref\|XP_011077887.1\|	2.7e-29	61.60	PREDICTED: 60S acidic ribosomal protein P2B-like [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR027534	Ribosomal_L12

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006414	translational elongation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G25340	CSPI06G25340	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G25340.1	CSPI06G25340.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G25340.1.utr3p1	CSPI06G25340.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G25340.1.cds4	CSPI06G25340.1.cds4	CDS
CSPI06G25340.1.cds3	CSPI06G25340.1.cds3	CDS
CSPI06G25340.1.cds2	CSPI06G25340.1.cds2	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G25340.1.utr5p2	CSPI06G25340.1.utr5p2	five_prime_UTR
CSPI06G25340.1.utr5p1	CSPI06G25340.1.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027534	Ribosomal protein L12 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 2..125 score: 13
None	No IPR available	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 1..125 score: 7.2
None	No IPR available	PANTHER	PTHR21141:SF50	SUBFAMILY NOT NAMED	coord: 1..125 score: 7.2
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 18..124 score: 1.2