CSPI06G25340 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G25340
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Description60S acidic ribosomal protein family
LocationChr6 : 22566221 .. 22567276 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTCCTTGAAGATCCAAAATCCTCTGTCTTCCATCCGTATGTTCTTCTTCAACTTCCTCCCTTTCTCTCTTCTTCGTCTTTGATTCCAACTCTTTCTTTTCCTTTTAAATATTTGCAGACATGAAGATCGTTGCGGCTTATTTGTTGGCTATTTTGGGCGGAAACACTCACCCTTCCATTCACGACATTAAAGCCATTCTCGCCTCTGGTAATTTCCACTTCCCTTCCAACTCTTTAATTTCGACATTCTTCTTTTTTTCTTTTTTTTTTCCCGTTTCATTGCTCTGTAAATTAATTAATCGTGTTAATCAAACAACAGAGTAAGAGTATTTAGGTTTAGGTTTTGTTCTGGTGCATTGCTTTTTGTGGAATTCTTGAATTGAAATTGAATTAATTACAGTTGGAGTTGAGGCCGAAGATGAAAGAATCGAGTTGCTTCTTTCACAAGTTAAGGGTAAAGATGTTGCAGAGCTTGTAGCTTGTGGGAGGGAGAAGATGGCATGTGTTCCATGTGGTGGTTCTGCCATTCCTGTAGCTGCCGGCAGTGATAGTGGCGGGGGGGGGGGCCNNNNNNNNNNNNNNNNNNNTGGTGCTGCCGCCGCTGTTGTTGCGGCCGAGCCTGTCAAAGAGGACAAGAAAGAAGTTGTTGAAGAATCTGATGAAGTAATTAACTTTATTTTCTTCTTTATTATCTCAACTAATTCATTCATATCTACTTCAATATTATGGCTAAATTATAGGTAGCACTACAAATTGCAAATATAACAATTATACGATCTACTAAACTATCTTTTATCAACTGGGGAAGTAAAATTGTCTAAGCTTAAATACAATATCTTCATATGGTTATTTTTTATTCTATTCATATAATTAGGGTTAGGGTTTTAAACTTGTATCATTCATCTAACCAAAGTTGTTTTTGTTTCTTTGTGTTTGCGTTGATGCAGGATATGTGCTTCAGTCTTTTTGATTGACGAGATTTATTTGTGTCCTTCACCTTTCAAAGTTTGATCAACTTTAGTTTAGATTCATTTTAAATTGATATATATACCCTGC

mRNA sequence

ATGAAGATCGTTGCGGCTTATTTGTTGGCTATTTTGGGCGGAAACACTCACCCTTCCATTCACGACATTAAAGCCATTCTCGCCTCTGTTGGAGTTGAGGCCGAAGATGAAAGAATCGAGTTGCTTCTTTCACAAGTTAAGGGTAAAGATGTTGCAGAGCTTGTAGCTTGTGGGAGGGAGAAGATGGCATGTGTTCCATGTGGTGGTTCTGCCATTCCTGTAGCTGCCGGCAGTGATAGTGGCGGGGGGGGGGGCCNNNNNNNNNNNNNNNNNNNTGGTGCTGCCGCCGCTGTTGTTGCGGCCGAGCCTGTCAAAGAGGACAAGAAAGAAGTTGTTGAAGAATCTGATGAAGATATGTGCTTCAGTCTTTTTGATTGA

Coding sequence (CDS)

ATGAAGATCGTTGCGGCTTATTTGTTGGCTATTTTGGGCGGAAACACTCACCCTTCCATTCACGACATTAAAGCCATTCTCGCCTCTGTTGGAGTTGAGGCCGAAGATGAAAGAATCGAGTTGCTTCTTTCACAAGTTAAGGGTAAAGATGTTGCAGAGCTTGTAGCTTGTGGGAGGGAGAAGATGGCATGTGTTCCATGTGGTGGTTCTGCCATTCCTGTAGCTGCCGGCAGTGATAGTGGCGGGGGGGGGGGCCNNNNNNNNNNNNNNNNNNNTGGTGCTGCCGCCGCTGTTGTTGCGGCCGAGCCTGTCAAAGAGGACAAGAAAGAAGTTGTTGAAGAATCTGATGAAGATATGTGCTTCAGTCTTTTTGATTGA
Homology
[Close]
BLAST of CSPI06G25340 vs. Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-27
Identity = 72/125 (57.60%), Postives = 92/125 (73.60%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK++AA+LLA+LGGNT P+  D+K+ILASVG +A+D++IELLLSQVKGKD+ EL+A GRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           ++A VP GG    VA  + +GGGGG         A A  A EP KE+K E  EESDE++ 
Sbjct: 61  RLASVPSGGG---VAVAAAAGGGGGD--------APAAAAEEPKKEEKSE--EESDEELG 112

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 112

[Close]
BLAST of CSPI06G25340 vs. Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 9.7e-27
Identity = 69/125 (55.20%), Postives = 83/125 (66.40%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK VAAYLLA+L GN  PS  D+ AIL SVG E ++E++ELLLSQ+ GKD+ EL+A GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K A VPCGG  + VAA + + GG             A  AAE  KE+K E  EESD+DM 
Sbjct: 61  KFASVPCGGGGVAVAAAAPAAGG-------------AAPAAEAKKEEKVEEKEESDDDMG 112

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 112

[Close]
BLAST of CSPI06G25340 vs. Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 9.7e-27
Identity = 73/125 (58.40%), Postives = 86/125 (68.80%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+L G   P+  DIK IL SVG E ED +IELLL +VKGKD+AEL+A GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG      A + SGGGGG       G A+   AAE  KE+KKE  EESD+DM 
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGG-------GGAS---AAESKKEEKKEEKEESDDDMG 115

Query: 121 FSLFD 126
           FSLF+
Sbjct: 121 FSLFE 115

[Close]
BLAST of CSPI06G25340 vs. Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-26
Identity = 70/125 (56.00%), Postives = 83/125 (66.40%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAA+LLA+L G   P+  DIK IL SVG E ED +IELLL +VKGKD+AEL+A GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG      A + SGGGGG              AAE  KE+KKE  EESD+DM 
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGG----------GGAPAAESKKEEKKEEKEESDDDMG 115

Query: 121 FSLFD 126
           FSLF+
Sbjct: 121 FSLFE 115

[Close]
BLAST of CSPI06G25340 vs. Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-25
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK++AAYLLA+LGGNT P+  D+K+IL SVG EA++E++E LL+++K KD+ E++A GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           +++ VP GG AI + A +   GGG            A  A E  KE+K E  EESDEDM 
Sbjct: 61  RLSSVPSGGGAIDMGAPAAVAGGG------------AAPAEEAKKEEKVEEKEESDEDMG 113

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 113

[Close]
BLAST of CSPI06G25340 vs. TrEMBL
Match: A0A0A0KKF6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G451490 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.3e-51
Identity = 115/125 (92.00%), Postives = 115/125 (92.00%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE
Sbjct: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           KMACVPCGGSAIPVAAGSDSGG          GAAAAVVAAEPVKEDKKEVVEESDEDMC
Sbjct: 61  KMACVPCGGSAIPVAAGSDSGG----------GAAAAVVAAEPVKEDKKEVVEESDEDMC 115

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 115

[Close]
BLAST of CSPI06G25340 vs. TrEMBL
Match: S8D2Z2_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00658 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 81/126 (64.29%), Postives = 94/126 (74.60%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+LGGN+ P+  D+K IL SVG +A+DERIELLLSQVKGKD+ EL+A GRE
Sbjct: 3   MKVVAAYLLAVLGGNSSPTAEDLKDILGSVGADADDERIELLLSQVKGKDITELIASGRE 62

Query: 61  KMACVPC-GGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDM 120
           K+A VP  GG A+ VAA    GGGGG       GAAAA  AAE  KE+K E  EESD+DM
Sbjct: 63  KLASVPAGGGGAVAVAAPVGGGGGGG-------GAAAAPAAAEAKKEEKVEEKEESDDDM 121

Query: 121 CFSLFD 126
            FSLFD
Sbjct: 123 GFSLFD 121

[Close]
BLAST of CSPI06G25340 vs. TrEMBL
Match: A0A0D2P4V1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G008900 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.3e-29
Identity = 77/125 (61.60%), Postives = 90/125 (72.00%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+LGGN  PS  D+K IL SVG EA+D+RIELLLS+VKGKD+ EL+A GRE
Sbjct: 69  MKVVAAYLLAVLGGNASPSADDLKVILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 128

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG A+ VAA +  GGGGG           A  AAE  KE+K E  EESD+DM 
Sbjct: 129 KLASVPSGGGAVAVAAPAAGGGGGG-----------AAPAAEAKKEEKVEEKEESDDDMG 182

Query: 121 FSLFD 126
           FSLFD
Sbjct: 189 FSLFD 182

[Close]
BLAST of CSPI06G25340 vs. TrEMBL
Match: A0A061GVH2_THECC (60S acidic ribosomal protein P2B, putative isoform 1 OS=Theobroma cacao GN=TCM_041470 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.3e-29
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK++AAYLLA+LGGN +PS  D+K IL SVG EA+D+RIELLLS+VKGKD+ EL+A GRE
Sbjct: 1   MKVIAAYLLAVLGGNANPSADDLKDILGSVGAEADDDRIELLLSEVKGKDITELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VPCGG A+ VA  +  GGGG            A  AAE  KE+K E  EESD+DM 
Sbjct: 61  KLASVPCGGGAVAVAVPAAGGGGG------------AAPAAEAKKEEKVEEKEESDDDMG 113

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 113

[Close]
BLAST of CSPI06G25340 vs. TrEMBL
Match: A0A0D2QPN4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G009000 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.6e-29
Identity = 77/125 (61.60%), Postives = 90/125 (72.00%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+LGGN  PS  D+K IL SVG EA+D+RIELLLS+VKGKD+ EL+A GRE
Sbjct: 1   MKVVAAYLLAVLGGNASPSADDLKVILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG A+ VAA +  GGGG           AA  AAE  KE+K E  EESD+DM 
Sbjct: 61  KLASVPSGGGAVAVAAPTAGGGGG-----------AAAPAAEAKKEEKVEEKEESDDDMG 114

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 114

[Close]
BLAST of CSPI06G25340 vs. TAIR10
Match: AT2G27710.1 (AT2G27710.1 60S acidic ribosomal protein family)

HSP 1 Score: 120.9 bits (302), Expect = 5.5e-28
Identity = 73/125 (58.40%), Postives = 86/125 (68.80%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+L G   P+  DIK IL SVG E ED +IELLL +VKGKD+AEL+A GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG      A + SGGGGG       G A+   AAE  KE+KKE  EESD+DM 
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGG-------GGAS---AAESKKEEKKEEKEESDDDMG 115

Query: 121 FSLFD 126
           FSLF+
Sbjct: 121 FSLFE 115

[Close]
BLAST of CSPI06G25340 vs. TAIR10
Match: AT3G44590.2 (AT3G44590.2 60S acidic ribosomal protein family)

HSP 1 Score: 108.6 bits (270), Expect = 2.8e-24
Identity = 66/125 (52.80%), Postives = 83/125 (66.40%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+ AA+LLA+LGGN +PS  +IK I+ +VG + + E IELLL +V GKD+AEL+A GRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG  + V+A   SGGGG            A   AE  KE KKE  EESD+DM 
Sbjct: 61  KLASVPSGGG-VAVSAAPSSGGGG------------AAAPAEK-KEAKKEEKEESDDDMG 111

Query: 121 FSLFD 126
           FSLF+
Sbjct: 121 FSLFE 111

[Close]
BLAST of CSPI06G25340 vs. TAIR10
Match: AT2G27720.2 (AT2G27720.2 60S acidic ribosomal protein family)

HSP 1 Score: 107.5 bits (267), Expect = 6.3e-24
Identity = 69/140 (49.29%), Postives = 82/140 (58.57%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILAS---------------VGVEAEDERIELLLSQ 60
           MK+VAA+LLA+L G   P+  DIK IL S                G E ED +IELLL +
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIGDCFGAETEDSQIELLLKE 60

Query: 61  VKGKDVAELVACGREKMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVK 120
           VKGKD+AEL+A GREK+A VP GG      A + SGGGGG              AAE  K
Sbjct: 61  VKGKDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGG----------GGAPAAESKK 120

Query: 121 EDKKEVVEESDEDMCFSLFD 126
           E+KKE  EESD+DM FSLF+
Sbjct: 121 EEKKEEKEESDDDMGFSLFE 130

[Close]
BLAST of CSPI06G25340 vs. TAIR10
Match: AT3G28500.1 (AT3G28500.1 60S acidic ribosomal protein family)

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-20
Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK++AA+LLA LGGN +P+ +D+K IL SVG E ++ +I+LL S +K  DV EL+A GRE
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDE 118
           KM+ +  GG A+ + AG   GGGGG           A  AAEPV E KK+V E  DE
Sbjct: 61  KMSALSSGGPAVAMVAG---GGGGG-----------AASAAEPVAESKKKVEEVKDE 103

[Close]
BLAST of CSPI06G25340 vs. TAIR10
Match: AT5G40040.1 (AT5G40040.1 60S acidic ribosomal protein family)

HSP 1 Score: 94.7 bits (234), Expect = 4.2e-20
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA L GN +PS+ D+K I+ SVG E + E+I+L  S +K +DV EL+A GRE
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           KMA +  GG A+ VA    SGGGGG        A AA  A+   K+ ++E  E  D+   
Sbjct: 61  KMAALSSGGGAVAVA----SGGGGG-------AAPAAEPASVESKKKEEEKEESEDDGGM 114

Query: 121 FSLFD 126
            SLFD
Sbjct: 121 MSLFD 114

[Close]
BLAST of CSPI06G25340 vs. NCBI nr
Match: gi|778717440|ref|XP_004143310.2| (PREDICTED: 60S acidic ribosomal protein P2-like [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 3.3e-51
Identity = 115/125 (92.00%), Postives = 115/125 (92.00%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE
Sbjct: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           KMACVPCGGSAIPVAAGSDSGG          GAAAAVVAAEPVKEDKKEVVEESDEDMC
Sbjct: 61  KMACVPCGGSAIPVAAGSDSGG----------GAAAAVVAAEPVKEDKKEVVEESDEDMC 115

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 115

[Close]
BLAST of CSPI06G25340 vs. NCBI nr
Match: gi|672162810|ref|XP_008801232.1| (PREDICTED: 60S acidic ribosomal protein P2-like [Phoenix dactylifera])

HSP 1 Score: 139.0 bits (349), Expect = 5.5e-30
Identity = 82/125 (65.60%), Postives = 92/125 (73.60%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK++AAYLLA+LGGN +PS  D+K IL SVGVEA D+RIE LLS+VKGKD+ ELVACGRE
Sbjct: 1   MKVIAAYLLAVLGGNNNPSSDDLKDILGSVGVEAGDDRIEFLLSEVKGKDITELVACGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K A VP G  A+ VAA   SGGGG        GA AA  AAEP KE+K E  EESDEDM 
Sbjct: 61  KYASVPSGAGAMAVAA--PSGGGG--------GAVAAPAAAEPKKEEKVEEKEESDEDMG 115

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 115

[Close]
BLAST of CSPI06G25340 vs. NCBI nr
Match: gi|747093190|ref|XP_011094390.1| (PREDICTED: 60S acidic ribosomal protein P2-1-like [Sesamum indicum])

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29
Identity = 80/125 (64.00%), Postives = 94/125 (75.20%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+LGGN  PS  D+K IL+SVG EA+D+RIELLL+QVK KD+ EL+A GRE
Sbjct: 1   MKVVAAYLLAVLGGNATPSAGDLKDILSSVGAEADDDRIELLLTQVKNKDITELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG A+ VAA S +GGGGG         AAA  AAEP KE+K E  EESD+DM 
Sbjct: 61  KLASVPAGGGAVAVAA-STAGGGGG---------AAAPAAAEPKKEEKVEEKEESDDDMG 115

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 115

[Close]
BLAST of CSPI06G25340 vs. NCBI nr
Match: gi|527209363|gb|EPS74099.1| (hypothetical protein M569_00658, partial [Genlisea aurea])

HSP 1 Score: 137.5 bits (345), Expect = 1.6e-29
Identity = 81/126 (64.29%), Postives = 94/126 (74.60%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+LGGN+ P+  D+K IL SVG +A+DERIELLLSQVKGKD+ EL+A GRE
Sbjct: 3   MKVVAAYLLAVLGGNSSPTAEDLKDILGSVGADADDERIELLLSQVKGKDITELIASGRE 62

Query: 61  KMACVPC-GGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDM 120
           K+A VP  GG A+ VAA    GGGGG       GAAAA  AAE  KE+K E  EESD+DM
Sbjct: 63  KLASVPAGGGGAVAVAAPVGGGGGGG-------GAAAAPAAAEAKKEEKVEEKEESDDDM 121

Query: 121 CFSLFD 126
            FSLFD
Sbjct: 123 GFSLFD 121

[Close]
BLAST of CSPI06G25340 vs. NCBI nr
Match: gi|747062724|ref|XP_011077887.1| (PREDICTED: 60S acidic ribosomal protein P2B-like [Sesamum indicum])

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-29
Identity = 77/125 (61.60%), Postives = 91/125 (72.80%), Query Frame = 1 

Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK++AAYLLA+LGGN  PS  D+K IL SVG EA+D+RIELLL+QVKGKD+ EL+A GRE
Sbjct: 1   MKVIAAYLLAVLGGNASPSADDLKNILNSVGAEADDDRIELLLTQVKGKDITELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGGGXXXXXXXGAAAAVVAAEPVKEDKKEVVEESDEDMC 120
           K+A VP GG A+ VAA +  GGG           AAA  AAEP KE+K E  EESD+DM 
Sbjct: 61  KLASVPAGGGAVAVAAPAAGGGG-----------AAAPAAAEPKKEEKVEEKEESDDDMG 114

Query: 121 FSLFD 126
           FSLFD
Sbjct: 121 FSLFD 114

The following BLAST results are available for this feature:
BLAST of CSPI06G25340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLA2_PARAR1.2e-2757.6060S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1[more]
RLA2A_MAIZE9.7e-2755.2060S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3[more]
RLA22_ARATH9.7e-2758.4060S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1[more]
RLA21_ARATH2.8e-2656.0060S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2[more]
RLA2B_MAIZE3.1e-2551.2060S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1[more]
BLAST of CSPI06G25340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKF6_CUCSA2.3e-5192.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G451490 PE=3 SV=1[more]
S8D2Z2_9LAMI1.1e-2964.29Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00658 PE=3 SV=1[more]
A0A0D2P4V1_GOSRA4.3e-2961.60Uncharacterized protein OS=Gossypium raimondii GN=B456_004G008900 PE=3 SV=1[more]
A0A061GVH2_THECC4.3e-2960.0060S acidic ribosomal protein P2B, putative isoform 1 OS=Theobroma cacao GN=TCM_0... [more]
A0A0D2QPN4_GOSRA5.6e-2961.60Uncharacterized protein OS=Gossypium raimondii GN=B456_004G009000 PE=3 SV=1[more]
BLAST of CSPI06G25340 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27710.15.5e-2858.40 60S acidic ribosomal protein family[more]
AT3G44590.22.8e-2452.80 60S acidic ribosomal protein family[more]
AT2G27720.26.3e-2449.29 60S acidic ribosomal protein family[more]
AT3G28500.12.5e-2049.57 60S acidic ribosomal protein family[more]
AT5G40040.14.2e-2048.00 60S acidic ribosomal protein family[more]
BLAST of CSPI06G25340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778717440|ref|XP_004143310.2|3.3e-5192.00PREDICTED: 60S acidic ribosomal protein P2-like [Cucumis sativus][more]
gi|672162810|ref|XP_008801232.1|5.5e-3065.60PREDICTED: 60S acidic ribosomal protein P2-like [Phoenix dactylifera][more]
gi|747093190|ref|XP_011094390.1|1.2e-2964.00PREDICTED: 60S acidic ribosomal protein P2-1-like [Sesamum indicum][more]
gi|527209363|gb|EPS74099.1|1.6e-2964.29hypothetical protein M569_00658, partial [Genlisea aurea][more]
gi|747062724|ref|XP_011077887.1|2.7e-2961.60PREDICTED: 60S acidic ribosomal protein P2B-like [Sesamum indicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027534Ribosomal_L12
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006414 translational elongation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G25340.1CSPI06G25340.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027534Ribosomal protein L12 familyHAMAPMF_01478Ribosomal_L12_archcoord: 2..125
score: 13
NoneNo IPR availablePANTHERPTHR2114160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBERcoord: 1..125
score: 7.2
NoneNo IPR availablePANTHERPTHR21141:SF50SUBFAMILY NOT NAMEDcoord: 1..125
score: 7.2
NoneNo IPR availablePFAMPF00428Ribosomal_60scoord: 18..124
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G25340Wax gourdcpiwgoB532
CSPI06G25340Wax gourdcpiwgoB619
CSPI06G25340Wax gourdcpiwgoB635
CSPI06G25340Wild cucumber (PI 183967)cpicpiB125
CSPI06G25340Wild cucumber (PI 183967)cpicpiB186
CSPI06G25340Cucumber (Gy14) v1cgycpiB085
CSPI06G25340Cucumber (Gy14) v1cgycpiB362
CSPI06G25340Cucumber (Gy14) v1cgycpiB571
CSPI06G25340Cucurbita maxima (Rimu)cmacpiB271
CSPI06G25340Cucurbita maxima (Rimu)cmacpiB648
CSPI06G25340Cucurbita maxima (Rimu)cmacpiB689
CSPI06G25340Cucurbita maxima (Rimu)cmacpiB855
CSPI06G25340Cucurbita maxima (Rimu)cmacpiB894
CSPI06G25340Cucurbita moschata (Rifu)cmocpiB259
CSPI06G25340Cucurbita moschata (Rifu)cmocpiB639
CSPI06G25340Cucurbita moschata (Rifu)cmocpiB681
CSPI06G25340Cucurbita moschata (Rifu)cmocpiB838
CSPI06G25340Cucurbita moschata (Rifu)cmocpiB874
CSPI06G25340Cucumber (Chinese Long) v2cpicuB284
CSPI06G25340Cucumber (Chinese Long) v2cpicuB313
CSPI06G25340Cucumber (Chinese Long) v2cpicuB315
CSPI06G25340Melon (DHL92) v3.5.1cpimeB426
CSPI06G25340Melon (DHL92) v3.5.1cpimeB485
CSPI06G25340Melon (DHL92) v3.5.1cpimeB513
CSPI06G25340Watermelon (Charleston Gray)cpiwcgB444
CSPI06G25340Watermelon (Charleston Gray)cpiwcgB463
CSPI06G25340Watermelon (Charleston Gray)cpiwcgB488
CSPI06G25340Watermelon (97103) v1cpiwmB467
CSPI06G25340Watermelon (97103) v1cpiwmB524
CSPI06G25340Watermelon (97103) v1cpiwmB534
CSPI06G25340Cucurbita pepo (Zucchini)cpecpiB081
CSPI06G25340Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G25340Cucurbita pepo (Zucchini)cpecpiB627
CSPI06G25340Cucurbita pepo (Zucchini)cpecpiB762
CSPI06G25340Cucurbita pepo (Zucchini)cpecpiB878
CSPI06G25340Bottle gourd (USVL1VR-Ls)cpilsiB423
CSPI06G25340Bottle gourd (USVL1VR-Ls)cpilsiB440
CSPI06G25340Bottle gourd (USVL1VR-Ls)cpilsiB452
CSPI06G25340Melon (DHL92) v3.6.1cpimedB420
CSPI06G25340Melon (DHL92) v3.6.1cpimedB473
CSPI06G25340Melon (DHL92) v3.6.1cpimedB497
CSPI06G25340Cucumber (Gy14) v2cgybcpiB140
CSPI06G25340Cucumber (Gy14) v2cgybcpiB287
CSPI06G25340Cucumber (Gy14) v2cgybcpiB290
CSPI06G25340Silver-seed gourdcarcpiB0173
CSPI06G25340Silver-seed gourdcarcpiB0271
CSPI06G25340Silver-seed gourdcarcpiB0282
CSPI06G25340Silver-seed gourdcarcpiB0847
CSPI06G25340Silver-seed gourdcarcpiB0965
CSPI06G25340Cucumber (Chinese Long) v3cpicucB334
CSPI06G25340Cucumber (Chinese Long) v3cpicucB363
CSPI06G25340Cucumber (Chinese Long) v3cpicucB367
CSPI06G25340Watermelon (97103) v2cpiwmbB438
CSPI06G25340Watermelon (97103) v2cpiwmbB442
CSPI06G25340Watermelon (97103) v2cpiwmbB458
CSPI06G25340Watermelon (97103) v2cpiwmbB479