CSPI06G19370.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI06G19370.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 17506443 .. 17506795 (-)
Sequence length273
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGAAACGGAGGTGGGAGTCGATGGCGATCGGTGCTGGAGAGTGGTGAGTGGTGAGTGGAGTGGTGGTCGTGAAAGAAAAGGGCGAGAGGGTCAAATCAAAATTGGAGGAAGGGGTTAGGTGGGGGCTTAGTTGAAATTGACGGCGTATGGCGTGAAATGTATAATGGCAACGGTGGAGGGGCCCATTTGGACGGAATAATTGTAGCGACCGCCATTGATGGAGCTTGCTACGGCTTTTCTCAAGGCCCCATTACTGTGATAGGAACAATACGCCTTCAACCCATTCCTCTTCTTCAACATTATTATGAATCTCTACCTCTTTCCACAATTGGTGATGAGATGAGATGA

mRNA sequence

ATGACGGAAACGGAGGTGGGAGTCGATGGCGATCGGTGCTGGAGAGTGGTGAGTGTTGAAATTGACGGCGTATGGCGTGAAATGTATAATGGCAACGGTGGAGGGGCCCATTTGGACGGAATAATTGTAGCGACCGCCATTGATGGAGCTTGCTACGGCTTTTCTCAAGGCCCCATTACTGTGATAGGAACAATACGCCTTCAACCCATTCCTCTTCTTCAACATTATTATGAATCTCTACCTCTTTCCACAATTGGTGATGAGATGAGATGA

Coding sequence (CDS)

ATGACGGAAACGGAGGTGGGAGTCGATGGCGATCGGTGCTGGAGAGTGGTGAGTGTTGAAATTGACGGCGTATGGCGTGAAATGTATAATGGCAACGGTGGAGGGGCCCATTTGGACGGAATAATTGTAGCGACCGCCATTGATGGAGCTTGCTACGGCTTTTCTCAAGGCCCCATTACTGTGATAGGAACAATACGCCTTCAACCCATTCCTCTTCTTCAACATTATTATGAATCTCTACCTCTTTCCACAATTGGTGATGAGATGAGATGA
Homology
[Close]
BLAST of CSPI06G19370.1 vs. TrEMBL
Match: A0A0A0KFK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G365190 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 9.5e-47
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MTETEVGVDGDRCWRVVSVEIDGVWREMYNGNGGGAHLDGIIVATAIDGACYGFSQGPIT 60
          MTETEVGVDGDRCWRVVSVEIDGVWREMYNGNGGGAHLDGIIVATAIDGACYGFSQGPIT
Sbjct: 1  MTETEVGVDGDRCWRVVSVEIDGVWREMYNGNGGGAHLDGIIVATAIDGACYGFSQGPIT 60

Query: 61 VIGTIRLQPIPLLQHYYESLPLSTIGDEMR 91
          VIGTIRLQPIPLLQHYYESLPLSTIGDEMR
Sbjct: 61 VIGTIRLQPIPLLQHYYESLPLSTIGDEMR 90

[Close]
BLAST of CSPI06G19370.1 vs. NCBI nr
Match: gi|700192415|gb|KGN47619.1| (hypothetical protein Csa_6G365190 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-46
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MTETEVGVDGDRCWRVVSVEIDGVWREMYNGNGGGAHLDGIIVATAIDGACYGFSQGPIT 60
          MTETEVGVDGDRCWRVVSVEIDGVWREMYNGNGGGAHLDGIIVATAIDGACYGFSQGPIT
Sbjct: 1  MTETEVGVDGDRCWRVVSVEIDGVWREMYNGNGGGAHLDGIIVATAIDGACYGFSQGPIT 60

Query: 61 VIGTIRLQPIPLLQHYYESLPLSTIGDEMR 91
          VIGTIRLQPIPLLQHYYESLPLSTIGDEMR
Sbjct: 61 VIGTIRLQPIPLLQHYYESLPLSTIGDEMR 90

The following BLAST results are available for this feature:
BLAST of CSPI06G19370.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G19370.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFK9_CUCSA9.5e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G365190 PE=4 SV=1[more]
BLAST of CSPI06G19370.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G19370.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192415|gb|KGN47619.1|1.4e-46100.00hypothetical protein Csa_6G365190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI06G19370CSPI06G19370gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI06G19370.1CSPI06G19370.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G19370.1.cds2CSPI06G19370.1.cds2CDS
CSPI06G19370.1.cds1CSPI06G19370.1.cds1CDS