CSPI06G19130.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAGCAATTTCTACTACAGTATTGTCTGAAGCAAATATTAGAAGATTACAATATGATTCCAGATCCAATGTCCAATTTCTACGATGCCCTTTGTGTTGGAATTGATTGGTTTGAAAATCTCAATACTGATGGTTTCTTTCAACTCTCTCCTGATAATTCTGGTTCGTTTTCTTTTTTTCCTTCCAAATTTTAATTAAAATGTTCAACTCCATTCATCACACCTTTCCATTTTTTCTTCTTCTAATTTTGTGTTTTGCTTCGTTTATTGTTTTTGAAGAAGATGATGAAATGGAACAACCCACTCCAGACTGCCAAAATGAGCCGCCGGAGCAACCGGAAGAGCAGCCTCCAAGACGACGACCCTCCCTTGCTGCACAGGTTTCGATTCCATTTTACTGTTGTTCTTTTTTACTTTTAATTTATCTAGTACAAAATGGAAAACTAACAGTTCTTTAAACATAATATTCAAATATAAAGAATTGAAAGTTGGTGATTCATTCAAATGTAATTTGTCTGCGCAGCGACAAAGAACGGGAAGAATGACGGTGAATGACGTGTGGGAATATCTTCATCTTCCAATATCAGAAGCTTCAAAAAAACTGAATGTGTGCAATACTGTATTGAAGAAAATATGCCGTCGGAGCGGTCTTAGCCGGTGGCCTTACAGAAAGGTGTGTGTGTTCTTCTTTATTAATTGTTCGACTACTCTGATTTTCACAGTAAAATGACTTGATAACTTATTTTGAACGACATAGATACGTAGTTACGAGAGACGAATAGCTGCACTGAGAGCCACCATGAATTCAAGCTACGGAGATACGAGAGTTCGAGCTGAAGCCGAGATTGAAAGGGTTCAAAAAGAACTTACTGATTTTTGTGCTCGAATCAGGATTTGA ATGATTCCAGATCCAATGTCCAATTTCTACGATGCCCTTTGTGTTGGAATTGATTGGTTTGAAAATCTCAATACTGATGGTTTCTTTCAACTCTCTCCTGATAATTCTGAAGATGATGAAATGGAACAACCCACTCCAGACTGCCAAAATGAGCCGCCGGAGCAACCGGAAGAGCAGCCTCCAAGACGACGACCCTCCCTTGCTGCACAGCGACAAAGAACGGGAAGAATGACGGTGAATGACGTGTGGGAATATCTTCATCTTCCAATATCAGAAGCTTCAAAAAAACTGAATGTGTGCAATACTGTATTGAAGAAAATATGCCGTCGGAGCGGTCTTAGCCGGTGGCCTTACAGAAAGATACGTAGTTACGAGAGACGAATAGCTGCACTGAGAGCCACCATGAATTCAAGCTACGGAGATACGAGAGTTCGAGCTGAAGCCGAGATTGAAAGGGTTCAAAAAGAACTTACTGATTTTTGTGCTCGAATCAGGATTTGA ATGATTCCAGATCCAATGTCCAATTTCTACGATGCCCTTTGTGTTGGAATTGATTGGTTTGAAAATCTCAATACTGATGGTTTCTTTCAACTCTCTCCTGATAATTCTGAAGATGATGAAATGGAACAACCCACTCCAGACTGCCAAAATGAGCCGCCGGAGCAACCGGAAGAGCAGCCTCCAAGACGACGACCCTCCCTTGCTGCACAGCGACAAAGAACGGGAAGAATGACGGTGAATGACGTGTGGGAATATCTTCATCTTCCAATATCAGAAGCTTCAAAAAAACTGAATGTGTGCAATACTGTATTGAAGAAAATATGCCGTCGGAGCGGTCTTAGCCGGTGGCCTTACAGAAAGATACGTAGTTACGAGAGACGAATAGCTGCACTGAGAGCCACCATGAATTCAAGCTACGGAGATACGAGAGTTCGAGCTGAAGCCGAGATTGAAAGGGTTCAAAAAGAACTTACTGATTTTTGTGCTCGAATCAGGATTTGA
BLAST of CSPI06G19130.1 vs. Swiss-Prot
Match: RKD1_ARATH (Protein RKD1 OS=Arabidopsis thaliana GN=RKD1 PE=3 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 8.7e-07 Identity = 23/72 (31.94%), Postives = 46/72 (63.89%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. Swiss-Prot
Match: NLP7_ARATH (Protein NLP7 OS=Arabidopsis thaliana GN=NLP7 PE=1 SV=2) HSP 1 Score: 55.1 bits (131), Expect = 8.7e-07 Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. Swiss-Prot
Match: NLP9_ARATH (Protein NLP9 OS=Arabidopsis thaliana GN=NLP9 PE=2 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06 Identity = 23/64 (35.94%), Postives = 39/64 (60.94%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. Swiss-Prot
Match: NLP4_ARATH (Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 4.3e-06 Identity = 25/78 (32.05%), Postives = 47/78 (60.26%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. Swiss-Prot
Match: NLP2_ORYSJ (Protein NLP2 OS=Oryza sativa subsp. japonica GN=NLP2 PE=2 SV=2) HSP 1 Score: 52.0 bits (123), Expect = 7.4e-06 Identity = 32/92 (34.78%), Postives = 46/92 (50.00%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. TrEMBL
Match: A0A0A0KGT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G362990 PE=4 SV=1) HSP 1 Score: 336.7 bits (862), Expect = 1.7e-89 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. TrEMBL
Match: A0A0A0L2U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G646380 PE=4 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 1.1e-35 Identity = 90/176 (51.14%), Postives = 118/176 (67.05%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. TrEMBL
Match: F8WLA7_CITUN (Putative uncharacterized protein ORF40 OS=Citrus unshiu GN=ORF40 PE=4 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 2.1e-31 Identity = 73/162 (45.06%), Postives = 109/162 (67.28%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. TrEMBL
Match: A0A067G1W6_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041600mg PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 3.8e-25 Identity = 62/162 (38.27%), Postives = 95/162 (58.64%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. TrEMBL
Match: V7ATG7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G080800g PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24 Identity = 68/179 (37.99%), Postives = 103/179 (57.54%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. TAIR10
Match: AT1G18790.1 (AT1G18790.1 RWP-RK domain-containing protein) HSP 1 Score: 55.1 bits (131), Expect = 4.9e-08 Identity = 23/72 (31.94%), Postives = 46/72 (63.89%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. TAIR10
Match: AT4G24020.1 (AT4G24020.1 NIN like protein 7) HSP 1 Score: 55.1 bits (131), Expect = 4.9e-08 Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. TAIR10
Match: AT3G59580.1 (AT3G59580.1 Plant regulator RWP-RK family protein) HSP 1 Score: 54.7 bits (130), Expect = 6.4e-08 Identity = 23/64 (35.94%), Postives = 39/64 (60.94%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. TAIR10
Match: AT1G20640.1 (AT1G20640.1 Plant regulator RWP-RK family protein) HSP 1 Score: 52.8 bits (125), Expect = 2.4e-07 Identity = 25/78 (32.05%), Postives = 47/78 (60.26%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. TAIR10
Match: AT2G17150.1 (AT2G17150.1 Plant regulator RWP-RK family protein) HSP 1 Score: 51.6 bits (122), Expect = 5.4e-07 Identity = 25/78 (32.05%), Postives = 42/78 (53.85%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. NCBI nr
Match: gi|778722257|ref|XP_011658444.1| (PREDICTED: protein RKD2-like [Cucumis sativus]) HSP 1 Score: 336.7 bits (862), Expect = 2.4e-89 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. NCBI nr
Match: gi|700192388|gb|KGN47592.1| (hypothetical protein Csa_6G362990 [Cucumis sativus]) HSP 1 Score: 336.7 bits (862), Expect = 2.4e-89 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. NCBI nr
Match: gi|659089471|ref|XP_008445526.1| (PREDICTED: protein RKD2-like isoform X1 [Cucumis melo]) HSP 1 Score: 323.6 bits (828), Expect = 2.1e-85 Identity = 162/166 (97.59%), Postives = 163/166 (98.19%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. NCBI nr
Match: gi|659089473|ref|XP_008445527.1| (PREDICTED: uncharacterized protein LOC103488516 isoform X2 [Cucumis melo]) HSP 1 Score: 317.4 bits (812), Expect = 1.5e-83 Identity = 161/166 (96.99%), Postives = 162/166 (97.59%), Query Frame = 1
BLAST of CSPI06G19130.1 vs. NCBI nr
Match: gi|778697847|ref|XP_004141337.2| (PREDICTED: uncharacterized protein LOC101213670 [Cucumis sativus]) HSP 1 Score: 157.9 bits (398), Expect = 1.5e-35 Identity = 90/176 (51.14%), Postives = 118/176 (67.05%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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