CSPI06G18680.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G18680.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Deleted in split hand/splt foot protein 1
Location	Chr6 : 16962905 .. 16966875 (+)
Sequence length	219

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAATAATGAATTAGAAAGCATCGGCTTGCCGACTTGTCTCTCAAGATATCTCGACTCATTTTTCCAATAGAAATCAAAGAAACACGAGACTCCCTCGATCTTCCCTGCTCCACGGCTCTCTCATCACAACTCTCTCCCAAGGTTCTTAGCTTCTTTCTCTCTCCATTTTTATCTTCTTTCAATTTAATGTTACATTTCTCACTCTCGACTATGCTTTAGTGTTTGTCTTTTGAATTATGAATTATTTGATTGCTTGCTTTATAATTTCTGCTGCGATTCTCCTCAGAATTAGAAGGGAAGAAAACGAACATATGTATTTTCTTATTTTTCCTTTTGCTTCCACTCCTCTCTTCTGGGTCTGCCTTCTTCTCTGTTTTTCTCTAGAATCTGCAACCACAAATGTTGAATGGGGCCACCTCAGTGTGGCTGCGTGATAAGAACTGTTTGCTTTCTGTGCTTTCAATTATGTATTTGGAGAACAGAAAAGTTTCAGAACTTAAGACCGTATATTTGATATTCGAAGGCTACCGTTTCAAAGATTTGTTTTTCCTTTTCGAATTGGCTCCCCATGCTTCATATTGTAGTACAATAAAAAAATGCAAAAATCCCATTTAGTTCTTTGAATTATCTTAGTACAACTTTTAAGTGTAGTTAGATGGATGATGGAAAAGGGGCCTAGCCTGTGAATTGGGATGTGGTTGTGAAGTCTGTGAACATGAGCTTGATCTTGACAATTTAAGGACTTGTACAAAGACCTGTGGGGGAAATGGCTTTAACATTTCCTTCTCGAGTCTAAAACCAGTGGTGGAGGATTATCGCGAGTAAGTACGGTGTCCCCCCTTTGAGTGGAAGGATTTCTCTATTGACCTTCCTTCTTTCTCTAATTTAGTCTATTGTGTTGTGGGGAAGGGGATGGAATCGTGCTTTTGGGGGGGATCAGTGGTAGGAGATAGACCCCCTCATCTTTACCATTTATCCTCTTTGAAAAACTGTTTTGTGGATGAGGTTTTAGTTTGGTCTGGGACTTTGGGAGCTCCCTCTCTTTGTCGTGCGGCTTTCTTTGTCCTTTAGAGAAATGATGGATGTCACAACCCTTCTGTCTCTGATAGAGGAGTTGGATTAGGATCAGGGGAAGGGATGTGAGTATTTGATGCTCTAACCCTTCTGGAGGTCTCTCTTGTACTTCTTTTCTTTTTTCAATTGTTTGATGGACCCTTCACCCAATATGAATTTTTTTTTCTTAGCTCTCTTGAACATTAAGATTCCAAAGAAGGTTAAGTTCTTTGTCTACCAGGTCATCCATAGAGAATGTAACACTCTTGATTAGGTCTCGAGAAAGCAACCTACATTTATTGGCCCATTTTCTTAACCCTCCTTTGGAAGGCAAAGGAAGACCTGGATCATATGCTTTGAAGATTGTATGAACGATTTTTTGAGGCGTTTGGCTTTTCATTTGCCCACTCTAGAGACTTGAACATTTCTCATGGTTCCTTCTCCATTTGCCTTTTAAGGAGAAGGGTTGTTTCTCATGGCTTGCCGGAGTGTGCTATATTGTAGGTTCTTTGAGGAGAGAGGAATAATTGACTGTTTAGAGGATTGGAAAGAGATCCACGTGACATTTGGTCCTTTCATTGCTTCCATGTTTCTCTTTGGACTTTGGTGGTCTTTTGCAACTACCCAATAGGTATTATTTAATAGAACTAGAAAACCCTTCCTTTATTGGCCTCTCTTTTCATGGTTTTTTCCCCTTTCTGTGTGCTCATTCATTTTTTCTCAATGAAAGGTTGTTTTCTCATTAAAAAACAAAAAGGAAAAAAGAAAGAAAAATGTGTTTTCAGTTGTTTATCTTTCACTTGTTAATGTGATTCAAAATTTTTGCTGATCTATCAGATTACAAAGATTTGTAGATCACTTTGAGCTTTGTGATGGCAACTGAACTGAAAGCAGCTTCTGAGGAAGTGAAAGTTGACCTATTTGAGGATGATGATGAGTTTGAGGAGTTTGAGATTAATGAAGGTATGGCTTGTAATTATTTGTATTTTTTATTCCTTCCCTTGTTTGGATTCCTTTATTGCAGGTTTTAATTGCTCCCATTTTTCATTTATTACTGCCTCTTGTGCAAGATCCTCTTTCTTTCAGCCAAATGAATGTGAATGTTATGCAACGGGCTGGAAATCCTGTTACTGACTCAATCCTAACTGCTAGTATTTTTCATTTGGATGGCTCGTTACTGTTGCTTGTTCATTCATTATTTTTTCATTTATCAATGAAGCAGCTCCGTCTCTGTCAAAAAAAAACACATTGTTTTGTAGTAAAGTTGTGGAATCCAGTGTTTGAAACAAAGAAGCCAGAATGTTTGTAAACTCAATTGCAATAGTAACAATCAATGAAAAAAGCATATTGAGTATGATAAAGAAAAGTTGGATTAATGCATGGTTTTAAAAGACATGTCCCTCAAGTATACATTTGGATAGACCCTTTTCACTTTAAAAATTAATCTATAAAAGCCTCTAGATGTTTGTTTGAAGTTAATATAGTGACTTGTTTCTTGAAAAAAGTTCACAGAATTACTTATTTTCTTGGAAGAGAAAAAGTTTGTTTGGAGTTAATTTCTTCTGTGACATACATTTTCATTTTAAGCTCAGAAGTGCTTGAAGTGTTACATAAGGAAGCTGATGGAATAGCTTTTGAACAGAGTTTATTCAGATTTTGCTTTGATTACTTGAAATGGTCTTGGAAGAGTAAACTTTTTCCAACTTATATATTCCTCAAAAAAAAAAAAAAAAAAAAAGGAAGAGAGAGATAGATGACCATAAAACCACTTCTCTTTGTTCAGTGAAAGTGGGCGTTTTTCTCTATTTTTCAGAAATGGTTACGGTTACTTGATTGTTAGGAAGATAATAAAGATTTTTTTTTGTTTTGTATTCAGACCATATGGTTACTCGTTGATGTTGTCAACTGAAACTATGAATTGACGGTCCTACAAGTCTTGCATATGGGACGTTAGCATAACACTGTTAATTGTTAACGTTAGCATAACGCTGTTAATTGTTAACGTTAGCATAACACTGTTAATTGTTAACTTAATGTTGTATGTTCTATACATGTCATGTCATAATCGCAATGTGTTAGCAAAAAATGCTTGTTTGGAAATGAAGTGAAGGATTTGATGAGATTGCCATTTTGATCGTGTCTGAGAGCTTTTATGTATTTATTATTATTACTTTTTATCTAAATAAAAGTGTTTAGGTTTCTGAAGTGCACCTTGATTGATCTCACATAAAATTAGATTTATAGCATGTCACTGTCAAGTAATGCATGAGATTTTTTTATATGTATGCAATGATCATGAGGTCTTTGAACACATCCCTCCGTAAGGCAAGTCGTGGTGGTTCTTATTTGAGAGGACATAGAAGTTAGAGCACTGTAATATTGATGCTAATCAGATAGCTTAGAGATCTTTTCCTCCTTTTCAAAGTTATTTTGCAACACTAATATTTACTCAGGTTCGGGTGTAAAGCTTATTACTCTTGTTATTCTTAGCCTAAAACTTTTAAGCCTTGTGATATTTTTATAATCTTTCCTTCTGGTTCTCATCGATCAAAATGGATTTCAGAGTGGGAAGTGAAGGAAGGCAAAGAAATCACTCAGCAATGGGAAGATGACTGGGATGATGACGATGTTAATGATGACTTCTCGTTGCAGCTGAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGAAGAGAATCTAGGCACTTTCCTTTTATCTGTCAACATCTATGTTTAATTTGCACTCTTTGACCTTCAAAGACGGTTTTATTATGCCTTCTATCACTCAAATAGTGTCATTAAAATAGGCATATTGAATACCTATAGCCTCATTGTACGGCGACTAGAGATTAATTACGTTATAACATGGTAGTCACCTATTCATAATTTGAAGTTTTACTAATTTTTTGAAGTTGAG

mRNA sequence

ATGGCAACTGAACTGAAAGCAGCTTCTGAGGAAGTGAAAGTTGACCTATTTGAGGATGATGATGAGTTTGAGGAGTTTGAGATTAATGAAGAGTGGGAAGTGAAGGAAGGCAAAGAAATCACTCAGCAATGGGAAGATGACTGGGATGATGACGATGTTAATGATGACTTCTCGTTGCAGCTGAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGA

Coding sequence (CDS)

ATGGCAACTGAACTGAAAGCAGCTTCTGAGGAAGTGAAAGTTGACCTATTTGAGGATGATGATGAGTTTGAGGAGTTTGAGATTAATGAAGAGTGGGAAGTGAAGGAAGGCAAAGAAATCACTCAGCAATGGGAAGATGACTGGGATGATGACGATGTTAATGATGACTTCTCGTTGCAGCTGAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGA

Homology

[Close]

BLAST of CSPI06G18680.1 vs. Swiss-Prot
Match: SEM12_ARATH (Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana GN=DSS1(V) PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.7e-21
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E KAA E VKVDLFEDDDEFEEFEINE+W E +E KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLKRELENNAEKK 73
          QLK+ELEN +EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]

BLAST of CSPI06G18680.1 vs. Swiss-Prot
Match: SEM11_ARATH (Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana GN=DSS1(I) PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.9e-21
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 1  MATELKAASEEV-KVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFS 60
          MA E KAA+ EV K+DLFEDDDEFEEFEINE+W E +E KE++QQWEDDWDDDDVNDDFS
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEKEEVKEVSQQWEDDWDDDDVNDDFS 60

Query: 61 LQLKRELENNAEKK 73
           QL++ELEN  +KK
Sbjct: 61 RQLRKELENGTDKK 74

[Close]

BLAST of CSPI06G18680.1 vs. Swiss-Prot
Match: DSS1_MOUSE (26S proteasome complex subunit DSS1 OS=Mus musculus GN=Shfm1 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.2e-06
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 10 EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNA 69
          + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE + 
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHG 65

Query: 70 EK 72
           K
Sbjct: 66 YK 66

[Close]

BLAST of CSPI06G18680.1 vs. Swiss-Prot
Match: DSS1_HUMAN (26S proteasome complex subunit DSS1 OS=Homo sapiens GN=SHFM1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.2e-06
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 10 EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNA 69
          + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE + 
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHG 65

Query: 70 EK 72
           K
Sbjct: 66 YK 66

[Close]

BLAST of CSPI06G18680.1 vs. Swiss-Prot
Match: DSS1_BOVIN (26S proteasome complex subunit DSS1 OS=Bos taurus GN=SHFM1 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.2e-06
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 10 EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNA 69
          + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE + 
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHG 65

Query: 70 EK 72
           K
Sbjct: 66 YK 66

[Close]

BLAST of CSPI06G18680.1 vs. TrEMBL
Match: A0A0A0KIG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G358050 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-30
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 73
          LKRELENNAEKK
Sbjct: 61 LKRELENNAEKK 72

[Close]

BLAST of CSPI06G18680.1 vs. TrEMBL
Match: A0A0A0LU33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046000 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-25
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K A+EEVK+DLFEDDDEFEEFEINEEWE+K EGKEITQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEKK 73
          QL+RELE+N EKK
Sbjct: 61 QLRRELESNTEKK 73

[Close]

BLAST of CSPI06G18680.1 vs. TrEMBL
Match: W9RJ80_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010934 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-24
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE KAA+EE K+DLFEDDDEFEEFEIN+EWE K EGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEEAKIDLFEDDDEFEEFEINQEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEKK 73
          QL+RELENN +KK
Sbjct: 61 QLRRELENNQDKK 73

[Close]

BLAST of CSPI06G18680.1 vs. TrEMBL
Match: C6T0E4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G181200 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-23
Identity = 60/72 (83.33%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE KAA+E+VK+DLFEDDDEFEEFEINEEW+ K EGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLKRELENNAEK 72
          QL+RELE+N EK
Sbjct: 61 QLRRELESNTEK 72

[Close]

BLAST of CSPI06G18680.1 vs. TrEMBL
Match: A0A067K7X0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11494 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-23
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE KAA+E+VK+DLFEDDDEFEEFEINEEWE K EGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEDVKMDLFEDDDEFEEFEINEEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEK 72
          QL+RELE + EK
Sbjct: 61 QLRRELEKSTEK 72

[Close]

BLAST of CSPI06G18680.1 vs. TAIR10
Match: AT5G45010.1 (AT5G45010.1 DSS1 homolog on chromosome V)

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-22
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E KAA E VKVDLFEDDDEFEEFEINE+W E +E KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLKRELENNAEKK 73
          QLK+ELEN +EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]

BLAST of CSPI06G18680.1 vs. TAIR10
Match: AT1G64750.3 (AT1G64750.3 deletion of SUV3 suppressor 1(I))

HSP 1 Score: 80.5 bits (197), Expect = 4.8e-16
Identity = 55/115 (47.83%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 1   MATELKAASEEV-KVDLFEDDDEFEEFEINE----------------------------- 60
           MA E KAA+ EV K+DLFEDDDEFEEFEINE                             
Sbjct: 1   MAAEPKAATAEVVKMDLFEDDDEFEEFEINEVDSSDLTSSCIERIDKDGLVYELSRSDMK 60

Query: 61  ------------EW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNAEKK 73
                       +W E +E KE++QQWEDDWDDDDVNDDFS QL++ELEN  +KK
Sbjct: 61  TNLFDVNFRCEIDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 115

[Close]

BLAST of CSPI06G18680.1 vs. NCBI nr
Match: gi|449452971|ref|XP_004144232.1| (PREDICTED: probable 26S proteasome complex subunit sem1-2 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 3.2e-30
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 73
          LKRELENNAEKK
Sbjct: 61 LKRELENNAEKK 72

[Close]

BLAST of CSPI06G18680.1 vs. NCBI nr
Match: gi|449469525|ref|XP_004152470.1| (PREDICTED: probable 26S proteasome complex subunit sem1-1 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-25
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K A+EEVK+DLFEDDDEFEEFEINEEWE+K EGKEITQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEKK 73
          QL+RELE+N EKK
Sbjct: 61 QLRRELESNTEKK 73

[Close]

BLAST of CSPI06G18680.1 vs. NCBI nr
Match: gi|703122731|ref|XP_010102642.1| (hypothetical protein L484_010934 [Morus notabilis])

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-24
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE KAA+EE K+DLFEDDDEFEEFEIN+EWE K EGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEEAKIDLFEDDDEFEEFEINQEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEKK 73
          QL+RELENN +KK
Sbjct: 61 QLRRELENNQDKK 73

[Close]

BLAST of CSPI06G18680.1 vs. NCBI nr
Match: gi|702257149|ref|XP_010028198.1| (PREDICTED: probable 26S proteasome complex subunit sem1-1 [Eucalyptus grandis])

HSP 1 Score: 119.4 bits (298), Expect = 2.6e-24
Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K A+EE K+DLFEDDDEFEEFEINEEWE K EGK++TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATETKPATEEAKMDLFEDDDEFEEFEINEEWEDKEEGKDVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEK 72
          QL+RELENNAEK
Sbjct: 61 QLRRELENNAEK 72

[Close]

BLAST of CSPI06G18680.1 vs. NCBI nr
Match: gi|1012230212|ref|XP_015938169.1| (PREDICTED: protein DSS1 HOMOLOG ON CHROMOSOME V-like [Arachis duranensis])

HSP 1 Score: 117.9 bits (294), Expect = 7.6e-24
Identity = 59/72 (81.94%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWE-VKEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE KAA+E+VK+DLFEDDDEFEEFEINEEW+ ++EGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATETKAATEDVKIDLFEDDDEFEEFEINEEWDAIEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLKRELENNAEK 72
          QL+RELE+N EK
Sbjct: 61 QLRRELESNTEK 72

The following BLAST results are available for this feature:

BLAST of CSPI06G18680.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SEM12_ARATH	2.7e-21	76.71	Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana GN=DSS1(V) PE=1 SV=...	[more]
SEM11_ARATH	7.9e-21	74.32	Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana GN=DSS1(I) PE=1...	[more]
DSS1_MOUSE	4.2e-06	50.00	26S proteasome complex subunit DSS1 OS=Mus musculus GN=Shfm1 PE=3 SV=1	[more]
DSS1_HUMAN	4.2e-06	50.00	26S proteasome complex subunit DSS1 OS=Homo sapiens GN=SHFM1 PE=1 SV=1	[more]
DSS1_BOVIN	4.2e-06	50.00	26S proteasome complex subunit DSS1 OS=Bos taurus GN=SHFM1 PE=3 SV=1	[more]

BLAST of CSPI06G18680.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIG9_CUCSA	2.2e-30	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G358050 PE=4 SV=1	[more]
A0A0A0LU33_CUCSA	1.3e-25	87.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046000 PE=4 SV=1	[more]
W9RJ80_9ROSA	1.1e-24	84.93	Uncharacterized protein OS=Morus notabilis GN=L484_010934 PE=4 SV=1	[more]
C6T0E4_SOYBN	1.5e-23	83.33	Uncharacterized protein OS=Glycine max GN=GLYMA_04G181200 PE=2 SV=1	[more]
A0A067K7X0_JATCU	1.5e-23	84.72	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11494 PE=4 SV=1	[more]

BLAST of CSPI06G18680.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45010.1	1.5e-22	76.71	DSS1 homolog on chromosome V	[more]
AT1G64750.3	4.8e-16	47.83	deletion of SUV3 suppressor 1(I)	[more]

BLAST of CSPI06G18680.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452971\|ref\|XP_004144232.1\|	3.2e-30	100.00	PREDICTED: probable 26S proteasome complex subunit sem1-2 [Cucumis sativus]	[more]
gi\|449469525\|ref\|XP_004152470.1\|	1.8e-25	87.67	PREDICTED: probable 26S proteasome complex subunit sem1-1 [Cucumis sativus]	[more]
gi\|703122731\|ref\|XP_010102642.1\|	1.5e-24	84.93	hypothetical protein L484_010934 [Morus notabilis]	[more]
gi\|702257149\|ref\|XP_010028198.1\|	2.6e-24	86.11	PREDICTED: probable 26S proteasome complex subunit sem1-1 [Eucalyptus grandis]	[more]
gi\|1012230212\|ref\|XP_015938169.1\|	7.6e-24	81.94	PREDICTED: protein DSS1 HOMOLOG ON CHROMOSOME V-like [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007834	DSS1_SEM1

Vocabulary: **Cellular Component**
Term	Definition
GO:0008541	proteasome regulatory particle, lid subcomplex

Vocabulary: **Biological Process**
Term	Definition
GO:0006406	mRNA export from nucleus
GO:0043248	proteasome assembly

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0043248	proteasome assembly
cellular_component	GO:0008541	proteasome regulatory particle, lid subcomplex
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G18680	CSPI06G18680	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G18680.1	CSPI06G18680.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G18680.1.utr5p1	CSPI06G18680.1.utr5p1	five_prime_UTR
CSPI06G18680.1.utr5p2	CSPI06G18680.1.utr5p2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G18680.1.cds2	CSPI06G18680.1.cds2	CDS
CSPI06G18680.1.cds3	CSPI06G18680.1.cds3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G18680.1.utr3p1	CSPI06G18680.1.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007834	DSS1/SEM1	PFAM	PF05160	DSS1_SEM1	coord: 10..66 score: 4.9
IPR007834	DSS1/SEM1	SMART	SM01385	DSS1_SEM1_2	coord: 9..67 score: 1.1
None	No IPR available	PANTHER	PTHR16771	26 PROTEASOME COMPLEX SUBUNIT DSS1	coord: 1..71 score: 4.5
None	No IPR available	PANTHER	PTHR16771:SF1	SUBFAMILY NOT NAMED	coord: 1..71 score: 4.5