CSPI06G18680 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G18680
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Deleted in split hand/splt foot protein 1
Location	Chr6 : 16962905 .. 16966875 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAATAATGAATTAGAAAGCATCGGCTTGCCGACTTGTCTCTCAAGATATCTCGACTCATTTTTCCAATAGAAATCAAAGAAACACGAGACTCCCTCGATCTTCCCTGCTCCACGGCTCTCTCATCACAACTCTCTCCCAAGGTTCTTAGCTTCTTTCTCTCTCCATTTTTATCTTCTTTCAATTTAATGTTACATTTCTCACTCTCGACTATGCTTTAGTGTTTGTCTTTTGAATTATGAATTATTTGATTGCTTGCTTTATAATTTCTGCTGCGATTCTCCTCAGAATTAGAAGGGAAGAAAACGAACATATGTATTTTCTTATTTTTCCTTTTGCTTCCACTCCTCTCTTCTGGGTCTGCCTTCTTCTCTGTTTTTCTCTAGAATCTGCAACCACAAATGTTGAATGGGGCCACCTCAGTGTGGCTGCGTGATAAGAACTGTTTGCTTTCTGTGCTTTCAATTATGTATTTGGAGAACAGAAAAGTTTCAGAACTTAAGACCGTATATTTGATATTCGAAGGCTACCGTTTCAAAGATTTGTTTTTCCTTTTCGAATTGGCTCCCCATGCTTCATATTGTAGTACAATAAAAAAATGCAAAAATCCCATTTAGTTCTTTGAATTATCTTAGTACAACTTTTAAGTGTAGTTAGATGGATGATGGAAAAGGGGCCTAGCCTGTGAATTGGGATGTGGTTGTGAAGTCTGTGAACATGAGCTTGATCTTGACAATTTAAGGACTTGTACAAAGACCTGTGGGGGAAATGGCTTTAACATTTCCTTCTCGAGTCTAAAACCAGTGGTGGAGGATTATCGCGAGTAAGTACGGTGTCCCCCCTTTGAGTGGAAGGATTTCTCTATTGACCTTCCTTCTTTCTCTAATTTAGTCTATTGTGTTGTGGGGAAGGGGATGGAATCGTGCTTTTGGGGGGGATCAGTGGTAGGAGATAGACCCCCTCATCTTTACCATTTATCCTCTTTGAAAAACTGTTTTGTGGATGAGGTTTTAGTTTGGTCTGGGACTTTGGGAGCTCCCTCTCTTTGTCGTGCGGCTTTCTTTGTCCTTTAGAGAAATGATGGATGTCACAACCCTTCTGTCTCTGATAGAGGAGTTGGATTAGGATCAGGGGAAGGGATGTGAGTATTTGATGCTCTAACCCTTCTGGAGGTCTCTCTTGTACTTCTTTTCTTTTTTCAATTGTTTGATGGACCCTTCACCCAATATGAATTTTTTTTTCTTAGCTCTCTTGAACATTAAGATTCCAAAGAAGGTTAAGTTCTTTGTCTACCAGGTCATCCATAGAGAATGTAACACTCTTGATTAGGTCTCGAGAAAGCAACCTACATTTATTGGCCCATTTTCTTAACCCTCCTTTGGAAGGCAAAGGAAGACCTGGATCATATGCTTTGAAGATTGTATGAACGATTTTTTGAGGCGTTTGGCTTTTCATTTGCCCACTCTAGAGACTTGAACATTTCTCATGGTTCCTTCTCCATTTGCCTTTTAAGGAGAAGGGTTGTTTCTCATGGCTTGCCGGAGTGTGCTATATTGTAGGTTCTTTGAGGAGAGAGGAATAATTGACTGTTTAGAGGATTGGAAAGAGATCCACGTGACATTTGGTCCTTTCATTGCTTCCATGTTTCTCTTTGGACTTTGGTGGTCTTTTGCAACTACCCAATAGGTATTATTTAATAGAACTAGAAAACCCTTCCTTTATTGGCCTCTCTTTTCATGGTTTTTTCCCCTTTCTGTGTGCTCATTCATTTTTTCTCAATGAAAGGTTGTTTTCTCATTAAAAAACAAAAAGGAAAAAAGAAAGAAAAATGTGTTTTCAGTTGTTTATCTTTCACTTGTTAATGTGATTCAAAATTTTTGCTGATCTATCAGATTACAAAGATTTGTAGATCACTTTGAGCTTTGTGATGGCAACTGAACTGAAAGCAGCTTCTGAGGAAGTGAAAGTTGACCTATTTGAGGATGATGATGAGTTTGAGGAGTTTGAGATTAATGAAGGTATGGCTTGTAATTATTTGTATTTTTTATTCCTTCCCTTGTTTGGATTCCTTTATTGCAGGTTTTAATTGCTCCCATTTTTCATTTATTACTGCCTCTTGTGCAAGATCCTCTTTCTTTCAGCCAAATGAATGTGAATGTTATGCAACGGGCTGGAAATCCTGTTACTGACTCAATCCTAACTGCTAGTATTTTTCATTTGGATGGCTCGTTACTGTTGCTTGTTCATTCATTATTTTTTCATTTATCAATGAAGCAGCTCCGTCTCTGTCAAAAAAAAACACATTGTTTTGTAGTAAAGTTGTGGAATCCAGTGTTTGAAACAAAGAAGCCAGAATGTTTGTAAACTCAATTGCAATAGTAACAATCAATGAAAAAAGCATATTGAGTATGATAAAGAAAAGTTGGATTAATGCATGGTTTTAAAAGACATGTCCCTCAAGTATACATTTGGATAGACCCTTTTCACTTTAAAAATTAATCTATAAAAGCCTCTAGATGTTTGTTTGAAGTTAATATAGTGACTTGTTTCTTGAAAAAAGTTCACAGAATTACTTATTTTCTTGGAAGAGAAAAAGTTTGTTTGGAGTTAATTTCTTCTGTGACATACATTTTCATTTTAAGCTCAGAAGTGCTTGAAGTGTTACATAAGGAAGCTGATGGAATAGCTTTTGAACAGAGTTTATTCAGATTTTGCTTTGATTACTTGAAATGGTCTTGGAAGAGTAAACTTTTTCCAACTTATATATTCCTCAAAAAAAAAAAAAAAAAAAAAGGAAGAGAGAGATAGATGACCATAAAACCACTTCTCTTTGTTCAGTGAAAGTGGGCGTTTTTCTCTATTTTTCAGAAATGGTTACGGTTACTTGATTGTTAGGAAGATAATAAAGATTTTTTTTTGTTTTGTATTCAGACCATATGGTTACTCGTTGATGTTGTCAACTGAAACTATGAATTGACGGTCCTACAAGTCTTGCATATGGGACGTTAGCATAACACTGTTAATTGTTAACGTTAGCATAACGCTGTTAATTGTTAACGTTAGCATAACACTGTTAATTGTTAACTTAATGTTGTATGTTCTATACATGTCATGTCATAATCGCAATGTGTTAGCAAAAAATGCTTGTTTGGAAATGAAGTGAAGGATTTGATGAGATTGCCATTTTGATCGTGTCTGAGAGCTTTTATGTATTTATTATTATTACTTTTTATCTAAATAAAAGTGTTTAGGTTTCTGAAGTGCACCTTGATTGATCTCACATAAAATTAGATTTATAGCATGTCACTGTCAAGTAATGCATGAGATTTTTTTATATGTATGCAATGATCATGAGGTCTTTGAACACATCCCTCCGTAAGGCAAGTCGTGGTGGTTCTTATTTGAGAGGACATAGAAGTTAGAGCACTGTAATATTGATGCTAATCAGATAGCTTAGAGATCTTTTCCTCCTTTTCAAAGTTATTTTGCAACACTAATATTTACTCAGGTTCGGGTGTAAAGCTTATTACTCTTGTTATTCTTAGCCTAAAACTTTTAAGCCTTGTGATATTTTTATAATCTTTCCTTCTGGTTCTCATCGATCAAAATGGATTTCAGAGTGGGAAGTGAAGGAAGGCAAAGAAATCACTCAGCAATGGGAAGATGACTGGGATGATGACGATGTTAATGATGACTTCTCGTTGCAGCTGAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGAAGAGAATCTAGGCACTTTCCTTTTATCTGTCAACATCTATGTTTAATTTGCACTCTTTGACCTTCAAAGACGGTTTTATTATGCCTTCTATCACTCAAATAGTGTCATTAAAATAGGCATATTGAATACCTATAGCCTCATTGTACGGCGACTAGAGATTAATTACGTTATAACATGGTAGTCACCTATTCATAATTTGAAGTTTTACTAATTTTTTGAAGTTGAG

mRNA sequence

ATGGCAACTGAACTGAAAGCAGCTTCTGAGGAAGTGAAAGTTGACCTATTTGAGGATGATGATGAGTTTGAGGAGTTTGAGATTAATGAAGAGTGGGAAGTGAAGGAAGGCAAAGAAATCACTCAGCAATGGGAAGATGACTGGGATGATGACGATGTTAATGATGACTTCTCGTTGCAGCTGAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGA

Coding sequence (CDS)

ATGGCAACTGAACTGAAAGCAGCTTCTGAGGAAGTGAAAGTTGACCTATTTGAGGATGATGATGAGTTTGAGGAGTTTGAGATTAATGAAGAGTGGGAAGTGAAGGAAGGCAAAGAAATCACTCAGCAATGGGAAGATGACTGGGATGATGACGATGTTAATGATGACTTCTCGTTGCAGCTGAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGA

Homology

[Close]

BLAST of CSPI06G18680 vs. Swiss-Prot
Match: SEM12_ARATH (Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana GN=DSS1(V) PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.7e-21
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E KAA E VKVDLFEDDDEFEEFEINE+W E +E KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLKRELENNAEKK 73
          QLK+ELEN +EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]

BLAST of CSPI06G18680 vs. Swiss-Prot
Match: SEM11_ARATH (Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana GN=DSS1(I) PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.9e-21
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 1  MATELKAASEEV-KVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFS 60
          MA E KAA+ EV K+DLFEDDDEFEEFEINE+W E +E KE++QQWEDDWDDDDVNDDFS
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEKEEVKEVSQQWEDDWDDDDVNDDFS 60

Query: 61 LQLKRELENNAEKK 73
           QL++ELEN  +KK
Sbjct: 61 RQLRKELENGTDKK 74

[Close]

BLAST of CSPI06G18680 vs. Swiss-Prot
Match: DSS1_MOUSE (26S proteasome complex subunit DSS1 OS=Mus musculus GN=Shfm1 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.2e-06
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 10 EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNA 69
          + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE + 
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHG 65

Query: 70 EK 72
           K
Sbjct: 66 YK 66

[Close]

BLAST of CSPI06G18680 vs. Swiss-Prot
Match: DSS1_HUMAN (26S proteasome complex subunit DSS1 OS=Homo sapiens GN=SHFM1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.2e-06
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 10 EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNA 69
          + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE + 
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHG 65

Query: 70 EK 72
           K
Sbjct: 66 YK 66

[Close]

BLAST of CSPI06G18680 vs. Swiss-Prot
Match: DSS1_BOVIN (26S proteasome complex subunit DSS1 OS=Bos taurus GN=SHFM1 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.2e-06
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 10 EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNA 69
          + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE + 
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHG 65

Query: 70 EK 72
           K
Sbjct: 66 YK 66

[Close]

BLAST of CSPI06G18680 vs. TrEMBL
Match: A0A0A0KIG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G358050 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-30
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 73
          LKRELENNAEKK
Sbjct: 61 LKRELENNAEKK 72

[Close]

BLAST of CSPI06G18680 vs. TrEMBL
Match: A0A0A0LU33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046000 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-25
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K A+EEVK+DLFEDDDEFEEFEINEEWE+K EGKEITQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEKK 73
          QL+RELE+N EKK
Sbjct: 61 QLRRELESNTEKK 73

[Close]

BLAST of CSPI06G18680 vs. TrEMBL
Match: W9RJ80_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010934 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-24
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE KAA+EE K+DLFEDDDEFEEFEIN+EWE K EGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEEAKIDLFEDDDEFEEFEINQEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEKK 73
          QL+RELENN +KK
Sbjct: 61 QLRRELENNQDKK 73

[Close]

BLAST of CSPI06G18680 vs. TrEMBL
Match: C6T0E4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G181200 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-23
Identity = 60/72 (83.33%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE KAA+E+VK+DLFEDDDEFEEFEINEEW+ K EGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLKRELENNAEK 72
          QL+RELE+N EK
Sbjct: 61 QLRRELESNTEK 72

[Close]

BLAST of CSPI06G18680 vs. TrEMBL
Match: A0A067K7X0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11494 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-23
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE KAA+E+VK+DLFEDDDEFEEFEINEEWE K EGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEDVKMDLFEDDDEFEEFEINEEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEK 72
          QL+RELE + EK
Sbjct: 61 QLRRELEKSTEK 72

[Close]

BLAST of CSPI06G18680 vs. TAIR10
Match: AT5G45010.1 (AT5G45010.1 DSS1 homolog on chromosome V)

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-22
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E KAA E VKVDLFEDDDEFEEFEINE+W E +E KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLKRELENNAEKK 73
          QLK+ELEN +EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]

BLAST of CSPI06G18680 vs. TAIR10
Match: AT1G64750.3 (AT1G64750.3 deletion of SUV3 suppressor 1(I))

HSP 1 Score: 80.5 bits (197), Expect = 4.8e-16
Identity = 55/115 (47.83%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 1   MATELKAASEEV-KVDLFEDDDEFEEFEINE----------------------------- 60
           MA E KAA+ EV K+DLFEDDDEFEEFEINE                             
Sbjct: 1   MAAEPKAATAEVVKMDLFEDDDEFEEFEINEVDSSDLTSSCIERIDKDGLVYELSRSDMK 60

Query: 61  ------------EW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNAEKK 73
                       +W E +E KE++QQWEDDWDDDDVNDDFS QL++ELEN  +KK
Sbjct: 61  TNLFDVNFRCEIDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 115

[Close]

BLAST of CSPI06G18680 vs. NCBI nr
Match: gi|449452971|ref|XP_004144232.1| (PREDICTED: probable 26S proteasome complex subunit sem1-2 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 3.2e-30
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 73
          LKRELENNAEKK
Sbjct: 61 LKRELENNAEKK 72

[Close]

BLAST of CSPI06G18680 vs. NCBI nr
Match: gi|449469525|ref|XP_004152470.1| (PREDICTED: probable 26S proteasome complex subunit sem1-1 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-25
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K A+EEVK+DLFEDDDEFEEFEINEEWE+K EGKEITQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEKK 73
          QL+RELE+N EKK
Sbjct: 61 QLRRELESNTEKK 73

[Close]

BLAST of CSPI06G18680 vs. NCBI nr
Match: gi|703122731|ref|XP_010102642.1| (hypothetical protein L484_010934 [Morus notabilis])

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-24
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE KAA+EE K+DLFEDDDEFEEFEIN+EWE K EGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEEAKIDLFEDDDEFEEFEINQEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEKK 73
          QL+RELENN +KK
Sbjct: 61 QLRRELENNQDKK 73

[Close]

BLAST of CSPI06G18680 vs. NCBI nr
Match: gi|702257149|ref|XP_010028198.1| (PREDICTED: probable 26S proteasome complex subunit sem1-1 [Eucalyptus grandis])

HSP 1 Score: 119.4 bits (298), Expect = 2.6e-24
Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K A+EE K+DLFEDDDEFEEFEINEEWE K EGK++TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATETKPATEEAKMDLFEDDDEFEEFEINEEWEDKEEGKDVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEK 72
          QL+RELENNAEK
Sbjct: 61 QLRRELENNAEK 72

[Close]

BLAST of CSPI06G18680 vs. NCBI nr
Match: gi|1012230212|ref|XP_015938169.1| (PREDICTED: protein DSS1 HOMOLOG ON CHROMOSOME V-like [Arachis duranensis])

HSP 1 Score: 117.9 bits (294), Expect = 7.6e-24
Identity = 59/72 (81.94%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWE-VKEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE KAA+E+VK+DLFEDDDEFEEFEINEEW+ ++EGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATETKAATEDVKIDLFEDDDEFEEFEINEEWDAIEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLKRELENNAEK 72
          QL+RELE+N EK
Sbjct: 61 QLRRELESNTEK 72

The following BLAST results are available for this feature:

BLAST of CSPI06G18680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SEM12_ARATH	2.7e-21	76.71	Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana GN=DSS1(V) PE=1 SV=...	[more]
SEM11_ARATH	7.9e-21	74.32	Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana GN=DSS1(I) PE=1...	[more]
DSS1_MOUSE	4.2e-06	50.00	26S proteasome complex subunit DSS1 OS=Mus musculus GN=Shfm1 PE=3 SV=1	[more]
DSS1_HUMAN	4.2e-06	50.00	26S proteasome complex subunit DSS1 OS=Homo sapiens GN=SHFM1 PE=1 SV=1	[more]
DSS1_BOVIN	4.2e-06	50.00	26S proteasome complex subunit DSS1 OS=Bos taurus GN=SHFM1 PE=3 SV=1	[more]

BLAST of CSPI06G18680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIG9_CUCSA	2.2e-30	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G358050 PE=4 SV=1	[more]
A0A0A0LU33_CUCSA	1.3e-25	87.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046000 PE=4 SV=1	[more]
W9RJ80_9ROSA	1.1e-24	84.93	Uncharacterized protein OS=Morus notabilis GN=L484_010934 PE=4 SV=1	[more]
C6T0E4_SOYBN	1.5e-23	83.33	Uncharacterized protein OS=Glycine max GN=GLYMA_04G181200 PE=2 SV=1	[more]
A0A067K7X0_JATCU	1.5e-23	84.72	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11494 PE=4 SV=1	[more]

BLAST of CSPI06G18680 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45010.1	1.5e-22	76.71	DSS1 homolog on chromosome V	[more]
AT1G64750.3	4.8e-16	47.83	deletion of SUV3 suppressor 1(I)	[more]

BLAST of CSPI06G18680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452971\|ref\|XP_004144232.1\|	3.2e-30	100.00	PREDICTED: probable 26S proteasome complex subunit sem1-2 [Cucumis sativus]	[more]
gi\|449469525\|ref\|XP_004152470.1\|	1.8e-25	87.67	PREDICTED: probable 26S proteasome complex subunit sem1-1 [Cucumis sativus]	[more]
gi\|703122731\|ref\|XP_010102642.1\|	1.5e-24	84.93	hypothetical protein L484_010934 [Morus notabilis]	[more]
gi\|702257149\|ref\|XP_010028198.1\|	2.6e-24	86.11	PREDICTED: probable 26S proteasome complex subunit sem1-1 [Eucalyptus grandis]	[more]
gi\|1012230212\|ref\|XP_015938169.1\|	7.6e-24	81.94	PREDICTED: protein DSS1 HOMOLOG ON CHROMOSOME V-like [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007834	DSS1_SEM1

Vocabulary: **Cellular Component**
Term	Definition
GO:0008541	proteasome regulatory particle, lid subcomplex

Vocabulary: **Biological Process**
Term	Definition
GO:0006406	mRNA export from nucleus
GO:0043248	proteasome assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0043248	proteasome assembly
cellular_component	GO:0008541	proteasome regulatory particle, lid subcomplex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G18680.1	CSPI06G18680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007834	DSS1/SEM1	PFAM	PF05160	DSS1_SEM1	coord: 10..66 score: 4.9
IPR007834	DSS1/SEM1	SMART	SM01385	DSS1_SEM1_2	coord: 9..67 score: 1.1
None	No IPR available	PANTHER	PTHR16771	26 PROTEASOME COMPLEX SUBUNIT DSS1	coord: 1..71 score: 4.5
None	No IPR available	PANTHER	PTHR16771:SF1	SUBFAMILY NOT NAMED	coord: 1..71 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G18680	CsaV3_6G031560	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G18680	Bhi04G001241	Wax gourd	cpiwgoB592
CSPI06G18680	Carg17646	Silver-seed gourd	carcpiB0150

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G18680	Cucurbita pepo (Zucchini)	cpecpiB844
CSPI06G18680	Bottle gourd (USVL1VR-Ls)	cpilsiB478
CSPI06G18680	Melon (DHL92) v3.6.1	cpimedB456
CSPI06G18680	Cucumber (Gy14) v2	cgybcpiB191
CSPI06G18680	Cucumber (Gy14) v2	cgybcpiB287
CSPI06G18680	Silver-seed gourd	carcpiB0242
CSPI06G18680	Watermelon (97103) v2	cpiwmbB513
CSPI06G18680	Wild cucumber (PI 183967)	cpicpiB166
CSPI06G18680	Cucumber (Gy14) v1	cgycpiB077
CSPI06G18680	Cucurbita maxima (Rimu)	cmacpiB198
CSPI06G18680	Cucurbita maxima (Rimu)	cmacpiB817
CSPI06G18680	Cucurbita moschata (Rifu)	cmocpiB183
CSPI06G18680	Cucurbita moschata (Rifu)	cmocpiB801
CSPI06G18680	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G18680	Melon (DHL92) v3.5.1	cpimeB464
CSPI06G18680	Melon (DHL92) v3.5.1	cpimeB505
CSPI06G18680	Watermelon (Charleston Gray)	cpiwcgB522
CSPI06G18680	Watermelon (Charleston Gray)	cpiwcgB532
CSPI06G18680	Watermelon (97103) v1	cpiwmB471
CSPI06G18680	Cucurbita pepo (Zucchini)	cpecpiB118