CSPI06G14200.2 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI06G14200.2
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 12503164 .. 12504166 (+)
Sequence length312
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCATTAATTTCTCTTTTAAATTATGATTTTAGCAAGGATTATACTGATCTCAAGTTCTCAATCATCAAAATATTTGGACAATCATAAAAGTTGTTCTCAGCTATTATTTTGTCTATTAAAGCTTAGCTGGATTGCACCAATTGGGCAAATTTCCCCTACAAATCACTTTAGAGTAAAGAGGGGGGAAAAGAAAGGAGAGAAGACAGCAACACAAAAAAGGTTGATAGAATGGCTCAAAATCCTCCTGTTTTGATATTTATTGATACTTATTAACAAAGCTTTGTACAGGTTGGCGAAAGGAACTCTTACTATAATTATAGATTCAATGAGGAAGACATAGCAGGGAAAGAAGCTCAACTATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGTCGCAAATCCCATCGAGACTCAAAAGAAGGTAAGCATTCCTCTAGCAGTGATAGCAGTGGAAATGGAAACGCAGGTGAAGAATGTGCAGCCAGTGCCACTGCCGTGGCTGCTGTTGCGGTCACAGCCGTGACCATGGATGCACTTGACGATGATGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCAGCGGGGCTGGTGGAGACTAGGAAATTGGAGGATTGGAGTTCTTATTTATTCTTTGCCTTTTCTGATTGCATCTGTTTGGTGATTCCCTTCTGATGGTTCTTTGCTGAATTCTGGTTGATGTGTGGGAATTTTATCTTTGCTTGAATTACATTATATGATTATGAGCATTTGGGTTTGAATTTCTTCTACGCTATAATATATATATACATATAGGAAACTTTGTACATCTTGTAATGGTGGCTGTTCTCAACTCTGCTTTGAACTTTTTTTTAGCTCATTGCTTCGCAAGGAATTCAAGGGCACATTTAAGTTGATTTTACTTTTGAGTGAATAAAAAGGAATGCCAAGGA

mRNA sequence

ATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGTCGCAAATCCCATCGAGACTCAAAAGAAGGTAAGCATTCCTCTAGCAGTGATAGCAGTGGAAATGGAAACGCAGGTGAAGAATGTGCAGCCAGTGCCACTGCCGTGGCTGCTGTTGCGGTCACAGCCGTGACCATGGATGCACTTGACGATGATGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCAGCGGGGCTGGTGGAGACTAG

Coding sequence (CDS)

ATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGTCGCAAATCCCATCGAGACTCAAAAGAAGGTAAGCATTCCTCTAGCAGTGATAGCAGTGGAAATGGAAACGCAGGTGAAGAATGTGCAGCCAGTGCCACTGCCGTGGCTGCTGTTGCGGTCACAGCCGTGACCATGGATGCACTTGACGATGATGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCAGCGGGGCTGGTGGAGACTAG
Homology
[Close]
BLAST of CSPI06G14200.2 vs. TrEMBL
Match: A0A0A0KFD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188150 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-44
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60
           MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE
Sbjct: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60

Query: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 104
           ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD
Sbjct: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103

[Close]
BLAST of CSPI06G14200.2 vs. NCBI nr
Match: gi|700191918|gb|KGN47122.1| (hypothetical protein Csa_6G188150 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 1.9e-44
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60
           MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE
Sbjct: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60

Query: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 104
           ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD
Sbjct: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103

The following BLAST results are available for this feature:
BLAST of CSPI06G14200.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G14200.2 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFD0_CUCSA1.3e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188150 PE=4 SV=1[more]
BLAST of CSPI06G14200.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G14200.2 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191918|gb|KGN47122.1|1.9e-44100.00hypothetical protein Csa_6G188150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI06G14200CSPI06G14200gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI06G14200.2CSPI06G14200.2-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G14200.2.utr5p1CSPI06G14200.2.utr5p1five_prime_UTR
CSPI06G14200.2.utr5p2CSPI06G14200.2.utr5p2five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G14200.2.cds2CSPI06G14200.2.cds2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G14200.2.utr3p1CSPI06G14200.2.utr3p1three_prime_UTR