CSPI06G05990.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAATAAAATACAAAAATAAGATAAAATTGAAAAGGAAATTGGAATTCAGTGCACAGGTCGTTGCGCGCTCCAGCATCGATCCCAACATCCATCGCTACGCCCCGTGGCCCTCTTCCTTCACTCTCAACCACCATTCACCTTGTTCTTCCTCAGATCTACACTCTCCGTCGCCCTCACTCTCAGGTTTTCTTCTCTTCTTTCTCCCACATCAGTTTCAGAGTGATTTATTCTGTATCCACAGATATTCTGAACGCCGATTATCGCTTCGTATCTCGTTATTGTTCGTATTTGTTTTCAGTTAACTGATTAACCTCCAATTCTAGATCTGGCGTAGTGATATAGATGTTTTTCTGCTAATTTACGATTTATGATCTCAGCATGTTAATTGAAGAATACTTTATGCTAATTTTGTGTTTAAATTGGAGTGGAACGAACTCGGGAATGAAATTGAGCTGACTAGAGGGAACATCGAGTTCTGGAAGTGATTGTGTTCTTTTCCGTTATTGCAGTTGAAGATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTGTAAGTTGATTGCTTGCATTCACTTATTACTATCTATGGTGCTTGGATTATGTTCACTGATGGCATTTAAATTAAGCTTCTCTGAACCGCGTCATCCTTTTTCTGCAACAATGAATTGTTGTTAATAGAAAATGAGTGTGAATTAGAACAGGGAAACTGGAGAGTGGTGATAGCGATTAGGTTTGCAGCTGTATTCGCTTGTTTCAAAATGAATCAATCTCAACCAACGAGACGTATTGAGCTATTATACAAAAATGTGAAAATATAATTCCAACTCTAACTGAAATCTCCAAACAATGTGGACAGTTAATGCACATTAAACCAGTTTATAGCAACTGTCAATGATCGTATTCTATTCTTCGGTAGACAACAAATATAATTGCTGTAATGTTACCTTCTTCTTTCCAAAGGCAACTGCTGTAAATTGAACCTTCTCGTTTCCCCAGATGGCTTCTTGTTGATTATGATGAGATTTTCCTATCTCCCAAAACCTGTCCTTTCCTTTGTATCTTGTATTTCTGTCTCCACCAATATTCTTTGTGATGATAACCATCAGCCAAGAATACAGTGTTCCATCTGAAAAGTTCATCTTCAAGTTCAAATTGTAAGCAGTCGATCTTGACATCTCAGTACCCAGCACTCTTTGAACTGGGATCTTAGTTATAGTAGACTTTATGTAGCTTATGATTTGAAGGTCTGGTTATGCGTCATTGTCGAGAACAATTGAACGACTCATTGTTAGCATGTTCTACATTTTCTTGGTCAAATATCGATGAATGAATATTACTTGTTTCTGATGAAAGTATGATTAGATTCCTCAAAATAAATAATTAGAAGATTGTAAGATCTGCATGTTCCAGCTTATTTACTTCAAATTGTGGAATCCTAGAAGTAAAACTGATGTTGGAAGTTTGCTGACTTGGTTCTGACTTCCTATTGTGTTGATTTATTTACATTGGTCCTTCCAACCTTACCAAAACTATTTTGTTGGAAAAATTCCAGTACTATGCTAAACAAATGACTAAAGTCTTAATATTTCGGGCCCTTGCATGCTTCTCTAGAAATTATTTTTGGTTGCAAATAATTTATGTAGCAATGACATTTTGTTTCTAAAGTCAATGTTGATTTTGCTACTTTTTCTGGCTATATCTGCGTTTTCTCATAGTGTATTTTTCATCTGCACCAGATCGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATTCTGGAGAGAGAGTACAACAAACGAAAGAGTTGCTCGCTTCATGTGAAAGCATTGAGTGGCAGGGAATTCTTAATTTATAAATCATGCTGTCTGCTACATTTGTTGTGAAACTTCTATTTTTCTTTTTTCCTTTTAATTTTTTATTTTATCGATGAGATCGGATATCACTTTTTTCTGGGGTTTCAGTGTGTGTCTAAGCATTGTGCATCCAATATATGCTTTGTCTGAAACTTTGCTTTCTTGATAGGAAGGTGGATGAACTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATAATGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACAGCTAGGACGCAGGTATTGCTCGTCTGACCCTGTTTTCTTTTGTGTCAACAGATTGAATAAAGAAATAAACAAGTTGGTAATCCTTGTTTCTCCCATATAGTTATTGCATGTTCATCTTGTAGTCCTTTTTTTTTTTTTACTTCTTTAGGTTGGCAATGTTAAGAAAGTAGTAGGAGCCGGCAAGGAGCAAATAGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACATGAAACAGATAGATCAAACTTATATTCAGCCCACCAAGCAAATGATGACTTCATCACATCCGAATCAGACAGACAGCTGCTTCTAATAAAGTAATGTGTATATTTCTCAACTCGGCTGTTAAATGAATCCTCCTGCTTAAGCAAAAAGTAGAAACCTATTGCTAAACTTAATAAGATTCCATAATAACAGAATAAAATGAGAGATGTCATTGTTTATTTGCAGTTTTCCATCTCAAACCTGGGTATTCTGAGGAAATTAGTCTTTCACTAATGTGAAGTAGATTACTTGTAACTCACCCGGATTTTATTCCCCTGTCAAATGTATATATAGGCAGCAGGACGAAGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACACGAAGAGCTCCTTGCACAGGTGTATATTTCATAGGTTGTGGTGCTGCTTATTGATTCTCCTATGCATCTGCAATCTGATGGAGTTTTTTAAACTAAAAAAAATTGTGCAGGACAAAATTATTGACGACCTAGGAATGGAAATGGACAGTACTTCAAATCGTCTTGATTTTGTACAGGTGTGTTCATGATCTCAGTGATTGCCATATGCACAAAATTTGGCTTCAGGTTCACAATAATAAGATACTGATATTCTGAAGACTTTAGCAGTAATCAATGGGTTTTCCTTTTTCTTTTTTTGGATTTAAAATCTCATTTTAGTCCCTGTCCCTTAACTGTCAAACTTATTCTGTTCTGGTCTCTAGAATTTAAAAATGTTTATTTTTATCACTCAACCTCCAAATTTATTCTATTTAGGTCCCTAAACTTTCAATTGGTCTTTGAACTTTAAATAAAACAATTATTTTCGTCTTTACACTTCATTTTTTTAACAAACTAATGACATAGTTTTGACTTTTGAGTGTGTGTACTAGCATGCTGATACGAACATTAGCCTACAGGTTAGAGACAATTGTATATGAGATGGAAAAGTAATATAGCACGGATGAAAATGATTCTTTTGATTGTTGTTTTGAAGTTCTGAGACCAGAATAGACTGAATGTCTTGTGAACTATTTATATAACAAACTTGAAAATTTCGTAACCAAGATGGTTCTCAACCCCCCCACCCCCTGTTAAGAGAAGTAAATGCAAGATATAAACTTCAATTTCTTGTTCTTGTATTGAACTTGAACCTTACAGAAAAAAGTAGCTGTGGTCATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTGTTTTTGGTGGCTTTGTTCATCATTCTTTTTGTGTTGGTCTTCCTCACCTAAAGTCATGCCCCATCCATCCATACTTCACAAGGCATCAGAAAATGGATTCGTTTGATTCGAGAAATTTTGAACTGAGAACTACAAAGAGGGGTCCTTCATGTACTTATGAGAATTCCAGAACCTAGCTGCTTCTATATTACAAAATGCAATGTGAAACTCGTTCACTTATTCATTATTTGT ATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATCGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATTCTGGAGAGAGAGTACAACAAACGAAAGAGTTGCTCGCTTCATGTGAAAGCATTGAGTGGAAGGTGGATGAACTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATAATGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACAGCTAGGACGCAGGTTGGCAATGTTAAGAAAGTAGTAGGAGCCGGCAAGGAGCAAATAGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACATGAAACAGATAGATCAAACTTATATTCAGCCCACCAAGCAAATGATGACTTCATCACATCCGAATCAGACAGACAGCTGCTTCTAATAAAGCAGCAGGACGAAGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACACGAAGAGCTCCTTGCACAGGTGTATATTTCATAG ATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATCGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATTCTGGAGAGAGAGTACAACAAACGAAAGAGTTGCTCGCTTCATGTGAAAGCATTGAGTGGAAGGTGGATGAACTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATAATGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACAGCTAGGACGCAGGTTGGCAATGTTAAGAAAGTAGTAGGAGCCGGCAAGGAGCAAATAGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACATGAAACAGATAGATCAAACTTATATTCAGCCCACCAAGCAAATGATGACTTCATCACATCCGAATCAGACAGACAGCTGCTTCTAATAAAGCAGCAGGACGAAGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACACGAAGAGCTCCTTGCACAGGTGTATATTTCATAG
BLAST of CSPI06G05990.1 vs. Swiss-Prot
Match: SYP61_ARATH (Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1) HSP 1 Score: 254.6 bits (649), Expect = 8.7e-67 Identity = 131/188 (69.68%), Postives = 153/188 (81.38%), Query Frame = 1
BLAST of CSPI06G05990.1 vs. Swiss-Prot
Match: STX6_PONAB (Syntaxin-6 OS=Pongo abelii GN=STX6 PE=2 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.8e-14 Identity = 54/198 (27.27%), Postives = 98/198 (49.49%), Query Frame = 1
BLAST of CSPI06G05990.1 vs. Swiss-Prot
Match: STX6_HUMAN (Syntaxin-6 OS=Homo sapiens GN=STX6 PE=1 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.8e-14 Identity = 54/198 (27.27%), Postives = 98/198 (49.49%), Query Frame = 1
BLAST of CSPI06G05990.1 vs. Swiss-Prot
Match: STX6_RAT (Syntaxin-6 OS=Rattus norvegicus GN=Stx6 PE=1 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 4.2e-13 Identity = 57/194 (29.38%), Postives = 101/194 (52.06%), Query Frame = 1
BLAST of CSPI06G05990.1 vs. Swiss-Prot
Match: STX6_MOUSE (Syntaxin-6 OS=Mus musculus GN=Stx6 PE=1 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 4.2e-13 Identity = 58/194 (29.90%), Postives = 100/194 (51.55%), Query Frame = 1
BLAST of CSPI06G05990.1 vs. TrEMBL
Match: A0A0A0KBM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078000 PE=4 SV=1) HSP 1 Score: 371.7 bits (953), Expect = 5.4e-100 Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 1
BLAST of CSPI06G05990.1 vs. TrEMBL
Match: B9H2P0_POPTR (Syntaxin 61 family protein OS=Populus trichocarpa GN=POPTR_0004s05020g PE=4 SV=2) HSP 1 Score: 303.5 bits (776), Expect = 1.8e-79 Identity = 159/190 (83.68%), Postives = 174/190 (91.58%), Query Frame = 1
BLAST of CSPI06G05990.1 vs. TrEMBL
Match: M5WIL7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010587mg PE=4 SV=1) HSP 1 Score: 298.5 bits (763), Expect = 5.8e-78 Identity = 156/188 (82.98%), Postives = 170/188 (90.43%), Query Frame = 1
BLAST of CSPI06G05990.1 vs. TrEMBL
Match: A0A061GE34_THECC (Syntaxin of plants 61 OS=Theobroma cacao GN=TCM_029787 PE=3 SV=1) HSP 1 Score: 291.2 bits (744), Expect = 9.3e-76 Identity = 152/188 (80.85%), Postives = 165/188 (87.77%), Query Frame = 1
BLAST of CSPI06G05990.1 vs. TrEMBL
Match: W9RG30_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000959 PE=3 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 6.0e-75 Identity = 152/190 (80.00%), Postives = 164/190 (86.32%), Query Frame = 1
BLAST of CSPI06G05990.1 vs. TAIR10
Match: AT1G28490.1 (AT1G28490.1 syntaxin of plants 61) HSP 1 Score: 254.6 bits (649), Expect = 4.9e-68 Identity = 131/188 (69.68%), Postives = 153/188 (81.38%), Query Frame = 1
BLAST of CSPI06G05990.1 vs. NCBI nr
Match: gi|700191050|gb|KGN46254.1| (hypothetical protein Csa_6G078000 [Cucumis sativus]) HSP 1 Score: 371.7 bits (953), Expect = 7.8e-100 Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 1
BLAST of CSPI06G05990.1 vs. NCBI nr
Match: gi|449474827|ref|XP_004154296.1| (PREDICTED: syntaxin-61 [Cucumis sativus]) HSP 1 Score: 364.4 bits (934), Expect = 1.2e-97 Identity = 187/188 (99.47%), Postives = 188/188 (100.00%), Query Frame = 1
BLAST of CSPI06G05990.1 vs. NCBI nr
Match: gi|659120260|ref|XP_008460099.1| (PREDICTED: syntaxin-61 [Cucumis melo]) HSP 1 Score: 357.1 bits (915), Expect = 2.0e-95 Identity = 183/188 (97.34%), Postives = 186/188 (98.94%), Query Frame = 1
BLAST of CSPI06G05990.1 vs. NCBI nr
Match: gi|566165008|ref|XP_002305773.2| (Syntaxin 61 family protein [Populus trichocarpa]) HSP 1 Score: 303.5 bits (776), Expect = 2.6e-79 Identity = 159/190 (83.68%), Postives = 174/190 (91.58%), Query Frame = 1
BLAST of CSPI06G05990.1 vs. NCBI nr
Match: gi|743846501|ref|XP_011027754.1| (PREDICTED: syntaxin-61 [Populus euphratica]) HSP 1 Score: 302.0 bits (772), Expect = 7.6e-79 Identity = 159/190 (83.68%), Postives = 172/190 (90.53%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
|