CSPI06G05810.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATTAAGAGCCGTAGGACTTTAAACTTCTCTTCTACTTACATAAACTGTTTCTTTTCACAATTTCTCTTATAGAAAAATTTCACTTCTCTTAGTTATGTTCAATCTTACCTCTTCCTTATTCCCTACTTTCTTCCATAGGAATATTTCCTCAAAACCCTTCTTCCAAAAATCCCTAAACAACCAAAAGTTACCATCTTTCACCACTTTTAACCACTTCCAGCTCCTCTTCAACCTCCTCGACTCCGATGGTGACGGCAAGATCTCGATGAAAGAGCTCAGTCAATTTCTCTATCGTCTAGGATATAAAAAGCTGAAAGCTACAATGGAAGCTGAAGAAATGGTGAAGGAAATGGATTCAGACCGTGATGGATTCATTGAAATGGATGAATTTTTAGAGTGAGTATGACTTACATATTAGTTTAAGCACTTTTTATAAAACGTGCTTCAACTTTTGATCTAACATAGACCATTTAAATACTACTTTGATTTCATTTTAATCTTTATACTTTCAAATTTGGCTTTTTTTTTTTTTTTGACTGTACTTGTATATTTTGGAAAATTTAGAGAGACGACTGGGTTAGGCGTAACGGATGGTAAACACATTCTTAGCTTTTAATTTTGATGACGAAACGTTTTAATATAGGGTTTTGCAGAAGGGGGAGGAAGAAGAAGAAATTCTTAGGGAAGCTTTTCTGATATTTGATGGTGATAAGAATGGATTGATTTGTGCTGAGAAATTAAAGAGAACATTGAGCAAATTTGGATGGAAAAAATGTGACCTCAAACAATGTAAAAAGATGATTGAAGGAGTTGATCATGATGGCGATGGCTTTGTGAATTTTCAAGACTTTCGGCTCATGATGACACAGAAAAGATAATCATATATATAATATAGAGATTATTATCTGTAATTTTATATTTGATTTATCTCTAAGAAATGTAATGTCGTCTTTAATTAATGCTTATGATTATGACTTGTAATAATATATCTTCTTTTTCTTTTCTTTTTTTAAAAATTGTAATGGG ATGTTCAATCTTACCTCTTCCTTATTCCCTACTTTCTTCCATAGGAATATTTCCTCAAAACCCTTCTTCCAAAAATCCCTAAACAACCAAAAGTTACCATCTTTCACCACTTTTAACCACTTCCAGCTCCTCTTCAACCTCCTCGACTCCGATGGTGACGGCAAGATCTCGATGAAAGAGCTCAGTCAATTTCTCTATCGTCTAGGATATAAAAAGCTGAAAGCTACAATGGAAGCTGAAGAAATGGTGAAGGAAATGGATTCAGACCGTGATGGATTCATTGAAATGGATGAATTTTTAGAGGTTTTGCAGAAGGGGGAGGAAGAAGAAGAAATTCTTAGGGAAGCTTTTCTGATATTTGATGGTGATAAGAATGGATTGATTTGTGCTGAGAAATTAAAGAGAACATTGAGCAAATTTGGATGGAAAAAATGTGACCTCAAACAATGTAAAAAGATGATTGAAGGAGTTGATCATGATGGCGATGGCTTTGTGAATTTTCAAGACTTTCGGCTCATGATGACACAGAAAAGATAA ATGTTCAATCTTACCTCTTCCTTATTCCCTACTTTCTTCCATAGGAATATTTCCTCAAAACCCTTCTTCCAAAAATCCCTAAACAACCAAAAGTTACCATCTTTCACCACTTTTAACCACTTCCAGCTCCTCTTCAACCTCCTCGACTCCGATGGTGACGGCAAGATCTCGATGAAAGAGCTCAGTCAATTTCTCTATCGTCTAGGATATAAAAAGCTGAAAGCTACAATGGAAGCTGAAGAAATGGTGAAGGAAATGGATTCAGACCGTGATGGATTCATTGAAATGGATGAATTTTTAGAGGTTTTGCAGAAGGGGGAGGAAGAAGAAGAAATTCTTAGGGAAGCTTTTCTGATATTTGATGGTGATAAGAATGGATTGATTTGTGCTGAGAAATTAAAGAGAACATTGAGCAAATTTGGATGGAAAAAATGTGACCTCAAACAATGTAAAAAGATGATTGAAGGAGTTGATCATGATGGCGATGGCTTTGTGAATTTTCAAGACTTTCGGCTCATGATGACACAGAAAAGATAA
BLAST of CSPI06G05810.1 vs. Swiss-Prot
Match: CML25_ARATH (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22 Identity = 59/161 (36.65%), Postives = 97/161 (60.25%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. Swiss-Prot
Match: CML27_ARATH (Probable calcium-binding protein CML27 OS=Arabidopsis thaliana GN=CML27 PE=1 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 8.7e-21 Identity = 56/132 (42.42%), Postives = 84/132 (63.64%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. Swiss-Prot
Match: CALM_PYUSP (Calmodulin OS=Pyuridae sp. PE=1 SV=2) HSP 1 Score: 100.5 bits (249), Expect = 1.9e-20 Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. Swiss-Prot
Match: CALM_PATSP (Calmodulin OS=Patinopecten sp. PE=1 SV=2) HSP 1 Score: 98.6 bits (244), Expect = 7.4e-20 Identity = 57/140 (40.71%), Postives = 84/140 (60.00%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. Swiss-Prot
Match: CML2_ARATH (Calmodulin-like protein 2 OS=Arabidopsis thaliana GN=CML2 PE=2 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 7.4e-20 Identity = 57/135 (42.22%), Postives = 84/135 (62.22%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. TrEMBL
Match: A0A0A0K8Z4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G076830 PE=4 SV=1) HSP 1 Score: 354.0 bits (907), Expect = 1.1e-94 Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. TrEMBL
Match: A0A067JXS4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14512 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 5.6e-35 Identity = 83/164 (50.61%), Postives = 115/164 (70.12%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. TrEMBL
Match: B9RDE4_RICCO (Calmodulin, putative OS=Ricinus communis GN=RCOM_1612330 PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 7.4e-35 Identity = 81/154 (52.60%), Postives = 107/154 (69.48%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. TrEMBL
Match: W9QZX9_9ROSA (Putative calcium-binding protein CML25 OS=Morus notabilis GN=L484_022442 PE=4 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 1.4e-33 Identity = 77/149 (51.68%), Postives = 103/149 (69.13%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. TrEMBL
Match: B9IC08_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s06640g PE=4 SV=2) HSP 1 Score: 149.8 bits (377), Expect = 3.1e-33 Identity = 75/145 (51.72%), Postives = 101/145 (69.66%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. TAIR10
Match: AT1G24620.1 (AT1G24620.1 EF hand calcium-binding protein family) HSP 1 Score: 107.8 bits (268), Expect = 6.8e-24 Identity = 59/161 (36.65%), Postives = 97/161 (60.25%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. TAIR10
Match: AT1G18210.1 (AT1G18210.1 Calcium-binding EF-hand family protein) HSP 1 Score: 101.7 bits (252), Expect = 4.9e-22 Identity = 56/132 (42.42%), Postives = 84/132 (63.64%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. TAIR10
Match: AT4G12860.1 (AT4G12860.1 EF hand calcium-binding protein family) HSP 1 Score: 98.6 bits (244), Expect = 4.1e-21 Identity = 57/135 (42.22%), Postives = 84/135 (62.22%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. TAIR10
Match: AT1G05990.1 (AT1G05990.1 EF hand calcium-binding protein family) HSP 1 Score: 97.4 bits (241), Expect = 9.2e-21 Identity = 57/136 (41.91%), Postives = 87/136 (63.97%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. TAIR10
Match: AT3G10190.1 (AT3G10190.1 Calcium-binding EF-hand family protein) HSP 1 Score: 97.4 bits (241), Expect = 9.2e-21 Identity = 59/150 (39.33%), Postives = 81/150 (54.00%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. NCBI nr
Match: gi|449470826|ref|XP_004153117.1| (PREDICTED: calmodulin-beta-like [Cucumis sativus]) HSP 1 Score: 354.0 bits (907), Expect = 1.6e-94 Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. NCBI nr
Match: gi|659120319|ref|XP_008460131.1| (PREDICTED: calmodulin-beta-like [Cucumis melo]) HSP 1 Score: 339.3 bits (869), Expect = 4.0e-90 Identity = 168/178 (94.38%), Postives = 171/178 (96.07%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. NCBI nr
Match: gi|802699492|ref|XP_012083557.1| (PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]) HSP 1 Score: 155.6 bits (392), Expect = 8.1e-35 Identity = 83/164 (50.61%), Postives = 115/164 (70.12%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. NCBI nr
Match: gi|223548913|gb|EEF50402.1| (calmodulin, putative [Ricinus communis]) HSP 1 Score: 155.2 bits (391), Expect = 1.1e-34 Identity = 81/154 (52.60%), Postives = 107/154 (69.48%), Query Frame = 1
BLAST of CSPI06G05810.1 vs. NCBI nr
Match: gi|1000981875|ref|XP_002511733.2| (PREDICTED: probable calcium-binding protein CML18 [Ricinus communis]) HSP 1 Score: 155.2 bits (391), Expect = 1.1e-34 Identity = 81/154 (52.60%), Postives = 107/154 (69.48%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
|