CSPI06G01940.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G01940.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 1457994 .. 1458341 (-)
Sequence length	246

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGACTGTTCTGAGATGAGTGACTTAGTGGCTGAGTTTGAGAGGTGTGTGCCGGTAGGGCGTCAGATGTTTGTTGGTGCCCTGCGCTTAGCTAACAGTGTGGCTCACCGTCTTGCCAGGGCGGCTCTTTTGTATGGTTGTTGGGATGCTGTTTTTACTTCTTTCCCTTCTTGGTTTTCCTCAGCTCTCAGGGAGGAGGTTGGGTTTATGTGGTTTCTGTTATAAAAAAGAAAGGAACTATGCAGAATTTATACCCTTGTCAGTGACTACTCCATTTATTTCATCTTTTCTGCCCTTTAGTTTAACCAAGAAGATTGTCTGACAAAAGAGGCTATAACCTTTTGA

mRNA sequence

ATGCAGGACTGTTCTGAGATGAGTGACTTAGTGGCTGAGTTTGAGAGGTGTGTGCCGGTAGGGCGTCAGATGTTTGTTGGTGCCCTGCGCTTAGCTAACAGTGTGGCTCACCGTCTTGCCAGGGCGGCTCTTTTGTATGGTTGTTGGGATGCTGTTTTTACTTCTTTCCCTTCTTGGTTTTCCTCAGCTCTCAGGGAGGAGTTTAACCAAGAAGATTGTCTGACAAAAGAGGCTATAACCTTTTGA

Coding sequence (CDS)

ATGCAGGACTGTTCTGAGATGAGTGACTTAGTGGCTGAGTTTGAGAGGTGTGTGCCGGTAGGGCGTCAGATGTTTGTTGGTGCCCTGCGCTTAGCTAACAGTGTGGCTCACCGTCTTGCCAGGGCGGCTCTTTTGTATGGTTGTTGGGATGCTGTTTTTACTTCTTTCCCTTCTTGGTTTTCCTCAGCTCTCAGGGAGGAGTTTAACCAAGAAGATTGTCTGACAAAAGAGGCTATAACCTTTTGA

Homology

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BLAST of CSPI06G01940.1 vs. TrEMBL
Match: A0A0A0KAF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013860 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.9e-39
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1


Query: 1  MQDCSEMSDLVAEFERCVPVGRQMFVGALRLANSVAHRLARAALLYGCWDAVFTSFPSWF 60
          MQDCSEMSDLVAEFERCVPVGR MFVGALRLANSVAHRLARAALLYGCWDAVFTSFPSWF
Sbjct: 1  MQDCSEMSDLVAEFERCVPVGRHMFVGALRLANSVAHRLARAALLYGCWDAVFTSFPSWF 60

Query: 61 SSALREEFNQEDCLTKEAITF 82
          SSALREEFNQEDCLTKEAITF
Sbjct: 61 SSALREEFNQEDCLTKEAITF 81

[Close]

BLAST of CSPI06G01940.1 vs. NCBI nr
Match: gi|700190610|gb|KGN45814.1| (hypothetical protein Csa_6G013860 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 5.5e-39
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1


Query: 1  MQDCSEMSDLVAEFERCVPVGRQMFVGALRLANSVAHRLARAALLYGCWDAVFTSFPSWF 60
          MQDCSEMSDLVAEFERCVPVGR MFVGALRLANSVAHRLARAALLYGCWDAVFTSFPSWF
Sbjct: 1  MQDCSEMSDLVAEFERCVPVGRHMFVGALRLANSVAHRLARAALLYGCWDAVFTSFPSWF 60

Query: 61 SSALREEFNQEDCLTKEAITF 82
          SSALREEFNQEDCLTKEAITF
Sbjct: 61 SSALREEFNQEDCLTKEAITF 81

The following BLAST results are available for this feature:

BLAST of CSPI06G01940.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G01940.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAF4_CUCSA	3.9e-39	98.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013860 PE=4 SV=1	[more]

BLAST of CSPI06G01940.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G01940.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190610\|gb\|KGN45814.1\|	5.5e-39	98.77	hypothetical protein Csa_6G013860 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G01940	CSPI06G01940	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G01940.1	CSPI06G01940.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G01940.1.cds2	CSPI06G01940.1.cds2	CDS
CSPI06G01940.1.cds1	CSPI06G01940.1.cds1	CDS