CSPI06G01940 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G01940
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 1457994 .. 1458341 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGACTGTTCTGAGATGAGTGACTTAGTGGCTGAGTTTGAGAGGTGTGTGCCGGTAGGGCGTCAGATGTTTGTTGGTGCCCTGCGCTTAGCTAACAGTGTGGCTCACCGTCTTGCCAGGGCGGCTCTTTTGTATGGTTGTTGGGATGCTGTTTTTACTTCTTTCCCTTCTTGGTTTTCCTCAGCTCTCAGGGAGGAGGTTGGGTTTATGTGGTTTCTGTTATAAAAAAGAAAGGAACTATGCAGAATTTATACCCTTGTCAGTGACTACTCCATTTATTTCATCTTTTCTGCCCTTTAGTTTAACCAAGAAGATTGTCTGACAAAAGAGGCTATAACCTTTTGA

mRNA sequence

ATGCAGGACTGTTCTGAGATGAGTGACTTAGTGGCTGAGTTTGAGAGGTGTGTGCCGGTAGGGCGTCAGATGTTTGTTGGTGCCCTGCGCTTAGCTAACAGTGTGGCTCACCGTCTTGCCAGGGCGGCTCTTTTGTATGGTTGTTGGGATGCTGTTTTTACTTCTTTCCCTTCTTGGTTTTCCTCAGCTCTCAGGGAGGAGTTTAACCAAGAAGATTGTCTGACAAAAGAGGCTATAACCTTTTGA

Coding sequence (CDS)

ATGCAGGACTGTTCTGAGATGAGTGACTTAGTGGCTGAGTTTGAGAGGTGTGTGCCGGTAGGGCGTCAGATGTTTGTTGGTGCCCTGCGCTTAGCTAACAGTGTGGCTCACCGTCTTGCCAGGGCGGCTCTTTTGTATGGTTGTTGGGATGCTGTTTTTACTTCTTTCCCTTCTTGGTTTTCCTCAGCTCTCAGGGAGGAGTTTAACCAAGAAGATTGTCTGACAAAAGAGGCTATAACCTTTTGA
Homology
[Close]
BLAST of CSPI06G01940 vs. TrEMBL
Match: A0A0A0KAF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013860 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.9e-39
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 1  MQDCSEMSDLVAEFERCVPVGRQMFVGALRLANSVAHRLARAALLYGCWDAVFTSFPSWF 60
          MQDCSEMSDLVAEFERCVPVGR MFVGALRLANSVAHRLARAALLYGCWDAVFTSFPSWF
Sbjct: 1  MQDCSEMSDLVAEFERCVPVGRHMFVGALRLANSVAHRLARAALLYGCWDAVFTSFPSWF 60

Query: 61 SSALREEFNQEDCLTKEAITF 82
          SSALREEFNQEDCLTKEAITF
Sbjct: 61 SSALREEFNQEDCLTKEAITF 81

[Close]
BLAST of CSPI06G01940 vs. NCBI nr
Match: gi|700190610|gb|KGN45814.1| (hypothetical protein Csa_6G013860 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 5.5e-39
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 1  MQDCSEMSDLVAEFERCVPVGRQMFVGALRLANSVAHRLARAALLYGCWDAVFTSFPSWF 60
          MQDCSEMSDLVAEFERCVPVGR MFVGALRLANSVAHRLARAALLYGCWDAVFTSFPSWF
Sbjct: 1  MQDCSEMSDLVAEFERCVPVGRHMFVGALRLANSVAHRLARAALLYGCWDAVFTSFPSWF 60

Query: 61 SSALREEFNQEDCLTKEAITF 82
          SSALREEFNQEDCLTKEAITF
Sbjct: 61 SSALREEFNQEDCLTKEAITF 81

The following BLAST results are available for this feature:
BLAST of CSPI06G01940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G01940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAF4_CUCSA3.9e-3998.77Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013860 PE=4 SV=1[more]
BLAST of CSPI06G01940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G01940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190610|gb|KGN45814.1|5.5e-3998.77hypothetical protein Csa_6G013860 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G01940.1CSPI06G01940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G01940Csa6G013860Cucumber (Chinese Long) v2cpicuB314
CSPI06G01940CsaV3_6G002090Cucumber (Chinese Long) v3cpicucB364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G01940Cucumber (Chinese Long) v3cpicucB348
CSPI06G01940Cucumber (Chinese Long) v3cpicucB357
CSPI06G01940Watermelon (97103) v2cpiwmbB447
CSPI06G01940Watermelon (97103) v2cpiwmbB483
CSPI06G01940Watermelon (97103) v2cpiwmbB508
CSPI06G01940Wax gourdcpiwgoB591
CSPI06G01940Wax gourdcpiwgoB632
CSPI06G01940Wild cucumber (PI 183967)cpicpiB159
CSPI06G01940Cucumber (Gy14) v1cgycpiB184
CSPI06G01940Cucumber (Gy14) v1cgycpiB213
CSPI06G01940Cucumber (Gy14) v1cgycpiB491
CSPI06G01940Cucurbita maxima (Rimu)cmacpiB314
CSPI06G01940Cucurbita maxima (Rimu)cmacpiB690
CSPI06G01940Cucurbita maxima (Rimu)cmacpiB777
CSPI06G01940Cucurbita maxima (Rimu)cmacpiB783
CSPI06G01940Cucurbita maxima (Rimu)cmacpiB784
CSPI06G01940Cucurbita moschata (Rifu)cmocpiB305
CSPI06G01940Cucurbita moschata (Rifu)cmocpiB682
CSPI06G01940Cucurbita moschata (Rifu)cmocpiB768
CSPI06G01940Cucurbita moschata (Rifu)cmocpiB773
CSPI06G01940Cucumber (Chinese Long) v2cpicuB298
CSPI06G01940Cucumber (Chinese Long) v2cpicuB308
CSPI06G01940Melon (DHL92) v3.5.1cpimeB454
CSPI06G01940Melon (DHL92) v3.5.1cpimeB476
CSPI06G01940Melon (DHL92) v3.5.1cpimeB517
CSPI06G01940Watermelon (Charleston Gray)cpiwcgB450
CSPI06G01940Watermelon (Charleston Gray)cpiwcgB491
CSPI06G01940Watermelon (Charleston Gray)cpiwcgB516
CSPI06G01940Watermelon (97103) v1cpiwmB497
CSPI06G01940Watermelon (97103) v1cpiwmB502
CSPI06G01940Watermelon (97103) v1cpiwmB527
CSPI06G01940Watermelon (97103) v1cpiwmB552
CSPI06G01940Cucurbita pepo (Zucchini)cpecpiB082
CSPI06G01940Cucurbita pepo (Zucchini)cpecpiB199
CSPI06G01940Cucurbita pepo (Zucchini)cpecpiB461
CSPI06G01940Cucurbita pepo (Zucchini)cpecpiB466
CSPI06G01940Bottle gourd (USVL1VR-Ls)cpilsiB437
CSPI06G01940Bottle gourd (USVL1VR-Ls)cpilsiB451
CSPI06G01940Bottle gourd (USVL1VR-Ls)cpilsiB465
CSPI06G01940Melon (DHL92) v3.6.1cpimedB464
CSPI06G01940Melon (DHL92) v3.6.1cpimedB500
CSPI06G01940Cucumber (Gy14) v2cgybcpiB187
CSPI06G01940Cucumber (Gy14) v2cgybcpiB288
CSPI06G01940Silver-seed gourdcarcpiB0024
CSPI06G01940Silver-seed gourdcarcpiB0301
CSPI06G01940Silver-seed gourdcarcpiB0592
CSPI06G01940Silver-seed gourdcarcpiB0709