CSPI05G18560.2 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G18560.2
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	ATP-dependent clp protease ATP-binding subunit clpx, putative
Location	Chr5 : 19608263 .. 19611354 (-)
Sequence length	603

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAAGGAAATTCAACACCATAGTGAAAAATCTTGTATTCTTTTCAGAAAAATAAAAAGAAAAAAAGAAAAAAATACATGCATATATAACTTCCTAAATGTTGGGATTAATAAATATTTTATTTTATTTTCGTGAGGCAGGGATTAGTGTATTAATGGAGTGACACTGAAATTAAATCGGACAAAACTTCCTGTTTTAAAATTTGTTAATGCATAATTTTAATTAATGTGAATGATTTTTCATCTTCGGCAGATGGATACTAAAAATATTCTCTTCATATGTGGTGGTGCATTTGTTGGCTTGGAGAAGTGCATCTCTGACAGGTACAAAATTGCTTCGTTATAACCAATGAATTTTTGTTTTTCCCCCTTTTATAGTCCATGCATGGAAATTGAATATCAACTCTCTTTCTGCAGGCAGCATGATTCCTCAATTGGATTCGGGGCTCCAGTTCGTGCTAGCATGAGAACTGGTAAATTGACTGAAGATTCAGTGACATCTTCGATGCTTGAAAATGTGAGACCTTAAACCAAAAGTTAAATTGTTGCACTATGAATTACTTTTGTTATCTTACCTTTGGCATTTTCTGAACTGAGGTTTCATTTACTTTCATTTGTTCCCCTCCATTCAACTACTGAAATGAAGGTCTTTTAACTTTTAGGTAGAAAGTGGCGATCTTATTACTTATGGTCTCATACCTGAATTTGTTGGACGATGTCCAATTCTAGTGAGTTTGTCAGCTTTGGATGAGGATCAACTTGTCCAGGTTTGGCTAGTCTTTTGGGTCATCTTTACTTATTTCTTTGCTCTGTTTTGTTACTTAGCTCTGGAAGATATAACAAATTTCTTCATCCTTATCTCTTTAATAGGTTCTTACAAAACCAAAAAATGCGCTTGGGAAACAGTACAAGAAGATGCTTAGAATGAATGATGTAAGTATTTTAGAATGAATGATGTTGGTACAAAATATTATTAATGAACCAAGCATTTATTACATATATGAAATGTTAAGCCAAGTTACTTCTAAGAAAATAAAAGGTAAAATTACAAAGATGGTTCTTATGGTGGGTAGAAAGTTAGAATTTTAGTCCTTATGGTATGATAAAACCTCGTAAATAGTCCCTAACTTTCTCCAAACCATAGGGACCAAATTATAACTTTCTTTAACCATAGGGACCAAATTTACAATTTCCAAAATAAAAACAAAGAATAGGTTTCTAAGAACTTGTTGTAAACCCATTAGTGTTCTTGTGTGTTTACTCCAAGGCTTTTGCAGGTTGAATTACATTTCACCGAGAATGCTTTAAGAATGATTGCGAGGAAAGCAATGAAAAAGAACACAGGCGCTAGGGGATTGAGATCCATTTTAGAAAATATTCTGACAGAAGCTATGTTTGAGGTATCACATTTACGAGTGCAATGTGTTTGTTTATTCCCCATTGAATTTCTATCTTTCTAATTTCAAAATGATGAGTTCCTGAACATGTGCTTTTTCTTTCTTCAAATATTTATAAAATGTCATTACGCTCAGGTTCCAGAAAGTAACAGCATAAAGGCTGTTCTGGTTGATGAAGAAGCTGTTGGATCAGTGGACGCTTCAGGCTGCGGAGCGAAAATTCTTTGTGATGTTGATGAATTAACGCAGTGTTCAAAATCTGAAATAATGAGAAATCTGAAGGTATTTTCTAATGATCTTCACTTGAACTCTTTGTCGTGTTGATCCTTTGCTTTGGTTATGTAACTGATAAGAAACCCTTGGACATTGGATCTAAGAACCATGTTAAACAACGAGACTAAAAGGAATACAACCCCAACAGTCCCAAAACCAATTTGATTTCAACCCCTAAGATAGGCTAGATACAAATTGCAAGAACAATTTTTTTCTCAACTTTTCTTTTTGTGTTGTCTTCATAATTAACTTGTCTTGCTATGTTAATAGCTTGGATCTTTGGATTGAGGATTAGAATTGCCTTATCATTTGGCATCGAGCATAGGTTGCATCTTTGTGGCCTACTCTAGGATTGATTCTCTCTTTCTTGCAAACTATTAATTCTAGGTTTTAGTTTCATCTTATCATTTCTTGTTTTTTGATCGATCGTTCTTCATATCTTTATTCTTCATATCTTTATCTTACTGTTATTACGTTTTACATATCGAAAAAAAAACAAAGTTGTGAAGAAAAGTAAAAAAGAAAAAGAAAAACTTTAGATGAATACAATTTGTAATCTCATTTTGAGAGTTTTTCCTTAATTTGTAATTCTTGTAATAGAATCATGCGAGTCATTCAATCTAACCTTGATCAAGTTTGATTGTGGAGTGATTCAATTAGGACAAGATTTCCAAATATTGCTTCTAGATCTTTTTTATCTAAGAGGTAATCTAATCTTAACTTTCTCTTAGTTGATCTAAATTGGTATAAAGAGGTGTTAATTTCTTATTTCAAATGTTCTTGCTAGTTGATAGCTTAATAGCTTAGATCTTTAGATTGAAGATTAAGATTGCCTTGTCAAATGAATGAGCTTACCATTTCTAATGTCCTAATCTCATGCAACTCATTTCCTTACCTAGTAATAAAATAGAAATAAAAATAAATAAAAATAAAAAATCCAATGTTTTTTCTTTTATTTAAATGTGTGGCATGACAGATTTTCACTGGTGTGCGGTGGAACTAGGCAGCATCTAAGCTATTTTCACTTATTTTCTTATTTGTCCAGCATGTTCCTAAGCATGTCCATGCTAGAAAGTAATGTTTTGTTAGAAAACATTGTTCTCGTGGTGGTACTGAATGAATGATATACGTTTTGTGAGACTGAGGTGAATGATGCCAGCTTAGATTGTACGAAGGTTTTTTCTTCGTTGAATTCTCCTCATCAAATTCAAATTGTTTTAGTGGGTATGAACATACTATCTTTGCCTTGATATACAGGGAAATGATATGGTTGCCGGCAACGAGGGTCGGTTCTCAAATGGAGTCGAGTTTCCATCTGTAGCTATTAGATTGTAAATGGCTTCTGCAGTTGATGATGTAAATTTATTGAACAAATTAGTATCAACAACAACAATCAATAATAAAATGTAAGCCTTCACTTTT

mRNA sequence

ATGATTTTTCATCTTCGGCAGATGGATACTAAAAATATTCTCTTCATATGTGGTGGTGCATTTGTTGGCTTGGAGAAGTGCATCTCTGACAGGCAGCATGATTCCTCAATTGGATTCGGGGCTCCAGTTCGTGCTAGCATGAGAACTGGTAAATTGACTGAAGATTCAGTGACATCTTCGATGCTTGAAAATGTTCTTACAAAACCAAAAAATGCGCTTGGGAAACAGTACAAGAAGATGCTTAGAATGAATGATGTTGAATTACATTTCACCGAGAATGCTTTAAGAATGATTGCGAGGAAAGCAATGAAAAAGAACACAGGCGCTAGGGGATTGAGATCCATTTTAGAAAATATTCTGACAGAAGCTATGTTTGAGGTTCCAGAAAGTAACAGCATAAAGGCTGTTCTGGTTGATGAAGAAGCTGTTGGATCAGTGGACGCTTCAGGCTGCGGAGCGAAAATTCTTTGTGATGTTGATGAATTAACGCAGTGTTCAAAATCTGAAATAATGAGAAATCTGAAGGGAAATGATATGGTTGCCGGCAACGAGGGTCGGTTCTCAAATGGAGTCGAGTTTCCATCTGTAGCTATTAGATTGTAA

Coding sequence (CDS)

ATGATTTTTCATCTTCGGCAGATGGATACTAAAAATATTCTCTTCATATGTGGTGGTGCATTTGTTGGCTTGGAGAAGTGCATCTCTGACAGGCAGCATGATTCCTCAATTGGATTCGGGGCTCCAGTTCGTGCTAGCATGAGAACTGGTAAATTGACTGAAGATTCAGTGACATCTTCGATGCTTGAAAATGTTCTTACAAAACCAAAAAATGCGCTTGGGAAACAGTACAAGAAGATGCTTAGAATGAATGATGTTGAATTACATTTCACCGAGAATGCTTTAAGAATGATTGCGAGGAAAGCAATGAAAAAGAACACAGGCGCTAGGGGATTGAGATCCATTTTAGAAAATATTCTGACAGAAGCTATGTTTGAGGTTCCAGAAAGTAACAGCATAAAGGCTGTTCTGGTTGATGAAGAAGCTGTTGGATCAGTGGACGCTTCAGGCTGCGGAGCGAAAATTCTTTGTGATGTTGATGAATTAACGCAGTGTTCAAAATCTGAAATAATGAGAAATCTGAAGGGAAATGATATGGTTGCCGGCAACGAGGGTCGGTTCTCAAATGGAGTCGAGTTTCCATCTGTAGCTATTAGATTGTAA

Homology

[Close]

BLAST of CSPI05G18560.2 vs. Swiss-Prot
Match: CLPX3_ARATH (CLP protease regulatory subunit CLPX3, mitochondrial OS=Arabidopsis thaliana GN=CLPX3 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.1e-43
Identity = 99/189 (52.38%), Postives = 123/189 (65.08%), Query Frame = 1


Query: 7   QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRTGKLTEDSVTSSML---- 66
           Q+DTK+ILFICGGAFV LEK I DR+ DSSIGFGAPVRA+M T  +T  ++TSS+L    
Sbjct: 433 QIDTKDILFICGGAFVDLEKTIVDRRQDSSIGFGAPVRANMATSGVTSGAITSSLLESVE 492

Query: 67  -------------------------------ENVLTKPKNALGKQYKKMLRMNDVELHFT 126
                                            VL +PKNALGKQYKK+  MN+V+LHFT
Sbjct: 493 SADLTAYGLIPEFVGRFPILVSLSALTEDQLIRVLVEPKNALGKQYKKLFSMNNVKLHFT 552

Query: 127 ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNS----IKAVLVDEEAVGSVD 157
           E AL +I+++AM KNTGARGLR++LE+ILTEAMFE+P+       I AV+VDEE+  S  
Sbjct: 553 EKALEIISKQAMVKNTGARGLRALLESILTEAMFEIPDDKKGDERIDAVIVDEESTSSEA 612

[Close]

BLAST of CSPI05G18560.2 vs. Swiss-Prot
Match: CLPX2_ARATH (CLP protease regulatory subunit CLPX2, mitochondrial OS=Arabidopsis thaliana GN=CLPX2 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.2e-42
Identity = 106/190 (55.79%), Postives = 124/190 (65.26%), Query Frame = 1


Query: 7   QMDTKNILFICGGAFVGLEKCISDRQHDSS-------------IGFG-APVRASMRTGKL 66
           QMDTK+ILFICGGAF+ LEK +S+RQHD+S              G   A V +S+     
Sbjct: 389 QMDTKDILFICGGAFIDLEKTVSERQHDASIGFGASVRTNMSTSGLSSAAVTSSLLESLQ 448

Query: 67  TEDSVTSSM---------------------LENVLTKPKNALGKQYKKMLRMNDVELHFT 126
           +ED V   +                     L  VLT+PK+ALGKQYKK+ RMN+V+L FT
Sbjct: 449 SEDLVAYGLIPEFVGRLPILVSLSALNEDQLVQVLTEPKSALGKQYKKLFRMNNVQLQFT 508

Query: 127 ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPE-----SNSIKAVLVDEEAVGSV 157
           E A R+IARKAM KNTGARGLRSILE+ILTEAMFEVP+     S SIKAVLVDEEAVGSV
Sbjct: 509 EGATRLIARKAMSKNTGARGLRSILESILTEAMFEVPDSITEGSQSIKAVLVDEEAVGSV 568

[Close]

BLAST of CSPI05G18560.2 vs. Swiss-Prot
Match: CLPX1_ARATH (CLP protease regulatory subunit CLPX1, mitochondrial OS=Arabidopsis thaliana GN=CLPX1 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.9e-38
Identity = 105/229 (45.85%), Postives = 135/229 (58.95%), Query Frame = 1


Query: 7   QMDTKNILFICGGAFVGLEKCISDRQHDSSIG----FGAPVRASMRT------------- 66
           Q+DTK+ILFICGGAFV +EK IS+R+HDSSIG      A +RA   T             
Sbjct: 348 QIDTKDILFICGGAFVDIEKTISERRHDSSIGFGAPVRANMRAGGVTNAAVASNLMETVE 407

Query: 67  -------GKLTE-----------DSVTSSMLENVLTKPKNALGKQYKKMLRMNDVELHFT 126
                  G + E            ++T + L  VLT+PKNALGKQYKKM +MN V+LHFT
Sbjct: 408 SSDLIAYGLIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQYKKMYQMNSVKLHFT 467

Query: 127 ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPE----SNSIKAVLVDEEAVGSVD 186
           E+ALR+IARKA+ KNTGARGLR++LE+IL ++M+E+P+    S+ I+AV+VDEEAV    
Sbjct: 468 ESALRLIARKAITKNTGARGLRALLESILMDSMYEIPDEGTGSDMIEAVVVDEEAVEGEG 527

Query: 187 ASGCGAKILCDVDELTQCSKSEIMRNLKGNDMVAGNEGRFSNGVEFPSV 197
             G GAKIL     L +   SE            G++G      E PSV
Sbjct: 528 RRGSGAKILRGKGALAR-YLSETNSKDSPQTTKEGSDGETEVEAEIPSV 575

[Close]

BLAST of CSPI05G18560.2 vs. Swiss-Prot
Match: CLPX_RUEPO (ATP-dependent Clp protease ATP-binding subunit ClpX OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=clpX PE=3 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 3.0e-30
Identity = 73/167 (43.71%), Postives = 103/167 (61.68%), Query Frame = 1


Query: 7   QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRTGK--------------- 66
           Q+DT NILFICGGAF GL+K I+ R   S++GFGA VRAS   G                
Sbjct: 237 QVDTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRASDERGVGELFTELEPEDLLKF 296

Query: 67  -------------LTEDSVTSSMLENVLTKPKNALGKQYKKMLRMNDVELHFTENALRMI 126
                         T + +    L  +LTKPKNAL KQY+++  + D EL FT++AL+ I
Sbjct: 297 GLIPEFVGRLPVLATLEDLDEDALVTILTKPKNALVKQYQRLFELEDTELDFTDDALKAI 356

Query: 127 ARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAVGS 146
           A++A+++ TGARGLRSI+E+IL + MF++P  +++  V+V+EEAV S
Sbjct: 357 AKRAIERKTGARGLRSIMEDILLDTMFDLPSMDNVTKVVVNEEAVTS 403

[Close]

BLAST of CSPI05G18560.2 vs. Swiss-Prot
Match: CLPX_CHESB (ATP-dependent Clp protease ATP-binding subunit ClpX OS=Chelativorans sp. (strain BNC1) GN=clpX PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.7e-30
Identity = 76/165 (46.06%), Postives = 100/165 (60.61%), Query Frame = 1


Query: 7   QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRA--SMRTGKL------------ 66
           Q+DT +ILFICGGAF GLEK ISDR   +SIGFGA V +    R G+L            
Sbjct: 238 QVDTSSILFICGGAFAGLEKIISDRGKKTSIGFGASVSSPEDRRAGELLRQVEPEDLLKF 297

Query: 67  --------------TEDSVTSSMLENVLTKPKNALGKQYKKMLRMNDVELHFTENALRMI 126
                         T + +    L  +LT+PKNAL KQY+++  M +VEL F ENALR I
Sbjct: 298 GLIPEFVGRLPILATLEDLDEEALVQILTEPKNALVKQYQRLFEMENVELTFHENALRAI 357

Query: 127 ARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAV 144
           ARKA+++ TGARGLRSI+E IL + MFE+P    ++ V++ E+ V
Sbjct: 358 ARKAIERKTGARGLRSIMEAILLDTMFELPALEGVQEVVISEDVV 402

[Close]

BLAST of CSPI05G18560.2 vs. TrEMBL
Match: A0A0A0KR77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G527380 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 4.2e-87
Identity = 179/228 (78.51%), Postives = 182/228 (79.82%), Query Frame = 1


Query: 8   MDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRT------------------ 67
           MDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRT                  
Sbjct: 1   MDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRTGKLTEDLVTSSMLENVES 60

Query: 68  ------GKLTE-----------DSVTSSMLENVLTKPKNALGKQYKKMLRMNDVELHFTE 127
                 G + E            ++    L  VLTKPKNALGKQYKKMLRMNDVELHFTE
Sbjct: 61  GDLITYGLIPEFVGRCPILVSLSALDEDQLVQVLTKPKNALGKQYKKMLRMNDVELHFTE 120

Query: 128 NALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGCG 187
           NALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGCG
Sbjct: 121 NALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGCG 180

Query: 188 AKILCDVDELTQCSKSEIMRNLKGNDMVAGNEGRFSNGVEFPSVAIRL 201
           AKILCDVDELTQCSKSEIMRNLK NDMVAGNEGR SNGVEFPSVAIRL
Sbjct: 181 AKILCDVDELTQCSKSEIMRNLKVNDMVAGNEGRLSNGVEFPSVAIRL 228

[Close]

BLAST of CSPI05G18560.2 vs. TrEMBL
Match: K7N4V3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G213400 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.0e-53
Identity = 109/155 (70.32%), Postives = 135/155 (87.10%), Query Frame = 1


Query: 7   QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRTGKLTEDSVTSSMLENVL 66
           Q+DTKNILFICGGAF+ LEK IS+R+ DSSIGFG+PVR++MRTG +T  +VTSS+LE+VL
Sbjct: 284 QIDTKNILFICGGAFIDLEKTISERRQDSSIGFGSPVRSNMRTGGVTNAAVTSSLLESVL 343

Query: 67  TKPKNALGKQYKKMLRMNDVELHFTENALRMIARKAMKKNTGARGLRSILENILTEAMFE 126
           T+PKNAL KQYKK+  MN+V+LHFTE ALR+IA+KAM KNTGARGLR++LE+ILTEAMFE
Sbjct: 344 TEPKNALAKQYKKLFNMNNVKLHFTEKALRLIAKKAMAKNTGARGLRALLESILTEAMFE 403

Query: 127 VPE----SNSIKAVLVDEEAVGSVDASGCGAKILC 158
           +P+    +  I AV+VDEE+VGSV+A GCG KILC
Sbjct: 404 IPDVKAGNELIGAVVVDEESVGSVNAPGCGGKILC 438

[Close]

BLAST of CSPI05G18560.2 vs. TrEMBL
Match: A0A0R0HUU5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G176800 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.3e-51
Identity = 105/159 (66.04%), Postives = 132/159 (83.02%), Query Frame = 1


Query: 3   FHLRQMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRTGKLTEDSVTSSML 62
           F+  Q+DTKNILFICGGAF+ LEK IS+R+ DSSIGFGAPVR++MR G +T  +VTSS+L
Sbjct: 136 FYDMQIDTKNILFICGGAFINLEKTISERRQDSSIGFGAPVRSNMRAGGITNAAVTSSLL 195

Query: 63  ENVLTKPKNALGKQYKKMLRMNDVELHFTENALRMIARKAMKKNTGARGLRSILENILTE 122
           E+VL +PKNAL KQYKK+   N+V+LHFTE A R+IA+KAM K TGARGLR++LE+ILTE
Sbjct: 196 ESVLIEPKNALAKQYKKLFNTNNVKLHFTEKAHRLIAKKAMAKKTGARGLRALLESILTE 255

Query: 123 AMFEVPESNS----IKAVLVDEEAVGSVDASGCGAKILC 158
           AM+E+P+  +    I AV+VDEE+VGSV+A GCG KILC
Sbjct: 256 AMYEIPDVKAGDELIDAVVVDEESVGSVNAPGCGGKILC 294

[Close]

BLAST of CSPI05G18560.2 vs. TrEMBL
Match: A0A0B2RFB0_GLYSO (ATP-dependent Clp protease ATP-binding subunit ClpX (Fragment) OS=Glycine soja GN=glysoja_029969 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 7.0e-50
Identity = 103/154 (66.88%), Postives = 129/154 (83.77%), Query Frame = 1


Query: 8   MDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRTGKLTEDSVTSSMLENVLT 67
           +DTKNILFICGGAF+ LEK IS+R+ DSSIGFGAPVR++MR G +T  +VTSS+LE+VL 
Sbjct: 52  IDTKNILFICGGAFINLEKTISERRQDSSIGFGAPVRSNMRAGGITNAAVTSSLLESVLI 111

Query: 68  KPKNALGKQYKKMLRMNDVELHFTENALRMIARKAMKKNTGARGLRSILENILTEAMFEV 127
           +PKNAL KQYKK+   N+V+LHFTE A R+IA+KAM K TGARGLR++LE+ILTEAM+E+
Sbjct: 112 EPKNALAKQYKKLFNTNNVKLHFTEKAHRLIAKKAMAKKTGARGLRALLESILTEAMYEI 171

Query: 128 PESNS----IKAVLVDEEAVGSVDASGCGAKILC 158
           P+  +    I AV+VDEE+VGSV+A GCG KILC
Sbjct: 172 PDVKAGDELIDAVVVDEESVGSVNAPGCGGKILC 205

[Close]

BLAST of CSPI05G18560.2 vs. TrEMBL
Match: A0A067L0Y3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24892 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.0e-49
Identity = 122/218 (55.96%), Postives = 143/218 (65.60%), Query Frame = 1


Query: 7   QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRTGK--------------- 66
           QMDTK+ILFICGGAFV LEK IS+R+ D+SIGFGAPVRA+MRTG                
Sbjct: 368 QMDTKDILFICGGAFVNLEKTISERRQDASIGFGAPVRANMRTGGMTDAAVTSSLLESVE 427

Query: 67  --------------------LTEDSVTSSMLENVLTKPKNALGKQYKKMLRMNDVELHFT 126
                               ++  ++    L  VL +PKNALGKQYKKM  MN+V+LHFT
Sbjct: 428 SGDLIAYGLIPEFVGRFPILVSLSALNEDQLVQVLMEPKNALGKQYKKMFNMNNVKLHFT 487

Query: 127 ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPE----SNSIKAVLVDEEAVGSVD 185
           EN+LR+IA+KAM KNTGARGLR+ILENILTEAM+EVPE    +N I AVLVDEEAVGSVD
Sbjct: 488 ENSLRLIAKKAMAKNTGARGLRAILENILTEAMYEVPENKTGTNYITAVLVDEEAVGSVD 547

[Close]

BLAST of CSPI05G18560.2 vs. TAIR10
Match: AT1G33360.1 (AT1G33360.1 ATP-dependent Clp protease)

HSP 1 Score: 174.9 bits (442), Expect = 5.1e-44
Identity = 99/189 (52.38%), Postives = 123/189 (65.08%), Query Frame = 1


Query: 7   QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRTGKLTEDSVTSSML---- 66
           Q+DTK+ILFICGGAFV LEK I DR+ DSSIGFGAPVRA+M T  +T  ++TSS+L    
Sbjct: 433 QIDTKDILFICGGAFVDLEKTIVDRRQDSSIGFGAPVRANMATSGVTSGAITSSLLESVE 492

Query: 67  -------------------------------ENVLTKPKNALGKQYKKMLRMNDVELHFT 126
                                            VL +PKNALGKQYKK+  MN+V+LHFT
Sbjct: 493 SADLTAYGLIPEFVGRFPILVSLSALTEDQLIRVLVEPKNALGKQYKKLFSMNNVKLHFT 552

Query: 127 ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNS----IKAVLVDEEAVGSVD 157
           E AL +I+++AM KNTGARGLR++LE+ILTEAMFE+P+       I AV+VDEE+  S  
Sbjct: 553 EKALEIISKQAMVKNTGARGLRALLESILTEAMFEIPDDKKGDERIDAVIVDEESTSSEA 612

[Close]

BLAST of CSPI05G18560.2 vs. TAIR10
Match: AT5G49840.1 (AT5G49840.1 ATP-dependent Clp protease)

HSP 1 Score: 174.5 bits (441), Expect = 6.7e-44
Identity = 106/190 (55.79%), Postives = 124/190 (65.26%), Query Frame = 1


Query: 7   QMDTKNILFICGGAFVGLEKCISDRQHDSS-------------IGFG-APVRASMRTGKL 66
           QMDTK+ILFICGGAF+ LEK +S+RQHD+S              G   A V +S+     
Sbjct: 389 QMDTKDILFICGGAFIDLEKTVSERQHDASIGFGASVRTNMSTSGLSSAAVTSSLLESLQ 448

Query: 67  TEDSVTSSM---------------------LENVLTKPKNALGKQYKKMLRMNDVELHFT 126
           +ED V   +                     L  VLT+PK+ALGKQYKK+ RMN+V+L FT
Sbjct: 449 SEDLVAYGLIPEFVGRLPILVSLSALNEDQLVQVLTEPKSALGKQYKKLFRMNNVQLQFT 508

Query: 127 ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPE-----SNSIKAVLVDEEAVGSV 157
           E A R+IARKAM KNTGARGLRSILE+ILTEAMFEVP+     S SIKAVLVDEEAVGSV
Sbjct: 509 EGATRLIARKAMSKNTGARGLRSILESILTEAMFEVPDSITEGSQSIKAVLVDEEAVGSV 568

[Close]

BLAST of CSPI05G18560.2 vs. TAIR10
Match: AT5G53350.1 (AT5G53350.1 CLP protease regulatory subunit X)

HSP 1 Score: 159.5 bits (402), Expect = 2.2e-39
Identity = 105/229 (45.85%), Postives = 135/229 (58.95%), Query Frame = 1


Query: 7   QMDTKNILFICGGAFVGLEKCISDRQHDSSIG----FGAPVRASMRT------------- 66
           Q+DTK+ILFICGGAFV +EK IS+R+HDSSIG      A +RA   T             
Sbjct: 348 QIDTKDILFICGGAFVDIEKTISERRHDSSIGFGAPVRANMRAGGVTNAAVASNLMETVE 407

Query: 67  -------GKLTE-----------DSVTSSMLENVLTKPKNALGKQYKKMLRMNDVELHFT 126
                  G + E            ++T + L  VLT+PKNALGKQYKKM +MN V+LHFT
Sbjct: 408 SSDLIAYGLIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQYKKMYQMNSVKLHFT 467

Query: 127 ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPE----SNSIKAVLVDEEAVGSVD 186
           E+ALR+IARKA+ KNTGARGLR++LE+IL ++M+E+P+    S+ I+AV+VDEEAV    
Sbjct: 468 ESALRLIARKAITKNTGARGLRALLESILMDSMYEIPDEGTGSDMIEAVVVDEEAVEGEG 527

Query: 187 ASGCGAKILCDVDELTQCSKSEIMRNLKGNDMVAGNEGRFSNGVEFPSV 197
             G GAKIL     L +   SE            G++G      E PSV
Sbjct: 528 RRGSGAKILRGKGALAR-YLSETNSKDSPQTTKEGSDGETEVEAEIPSV 575

[Close]

BLAST of CSPI05G18560.2 vs. NCBI nr
Match: gi|449450117|ref|XP_004142810.1| (PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 330.9 bits (847), Expect = 1.6e-87
Identity = 180/229 (78.60%), Postives = 183/229 (79.91%), Query Frame = 1


Query: 7   QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRT----------------- 66
           QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRT                 
Sbjct: 391 QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRTGKLTEDLVTSSMLENVE 450

Query: 67  -------GKLTE-----------DSVTSSMLENVLTKPKNALGKQYKKMLRMNDVELHFT 126
                  G + E            ++    L  VLTKPKNALGKQYKKMLRMNDVELHFT
Sbjct: 451 SGDLITYGLIPEFVGRCPILVSLSALDEDQLVQVLTKPKNALGKQYKKMLRMNDVELHFT 510

Query: 127 ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGC 186
           ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGC
Sbjct: 511 ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGC 570

Query: 187 GAKILCDVDELTQCSKSEIMRNLKGNDMVAGNEGRFSNGVEFPSVAIRL 201
           GAKILCDVDELTQCSKSEIMRNLK NDMVAGNEGR SNGVEFPSVAIRL
Sbjct: 571 GAKILCDVDELTQCSKSEIMRNLKVNDMVAGNEGRLSNGVEFPSVAIRL 619

[Close]

BLAST of CSPI05G18560.2 vs. NCBI nr
Match: gi|778703780|ref|XP_011655426.1| (PREDICTED: mitochondrial clpX-like chaperone MCX1 isoform X3 [Cucumis sativus])

HSP 1 Score: 330.9 bits (847), Expect = 1.6e-87
Identity = 180/229 (78.60%), Postives = 183/229 (79.91%), Query Frame = 1


Query: 7   QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRT----------------- 66
           QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRT                 
Sbjct: 310 QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRTGKLTEDLVTSSMLENVE 369

Query: 67  -------GKLTE-----------DSVTSSMLENVLTKPKNALGKQYKKMLRMNDVELHFT 126
                  G + E            ++    L  VLTKPKNALGKQYKKMLRMNDVELHFT
Sbjct: 370 SGDLITYGLIPEFVGRCPILVSLSALDEDQLVQVLTKPKNALGKQYKKMLRMNDVELHFT 429

Query: 127 ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGC 186
           ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGC
Sbjct: 430 ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGC 489

Query: 187 GAKILCDVDELTQCSKSEIMRNLKGNDMVAGNEGRFSNGVEFPSVAIRL 201
           GAKILCDVDELTQCSKSEIMRNLK NDMVAGNEGR SNGVEFPSVAIRL
Sbjct: 490 GAKILCDVDELTQCSKSEIMRNLKVNDMVAGNEGRLSNGVEFPSVAIRL 538

[Close]

BLAST of CSPI05G18560.2 vs. NCBI nr
Match: gi|700196222|gb|KGN51399.1| (hypothetical protein Csa_5G527380 [Cucumis sativus])

HSP 1 Score: 328.9 bits (842), Expect = 6.0e-87
Identity = 179/228 (78.51%), Postives = 182/228 (79.82%), Query Frame = 1


Query: 8   MDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRT------------------ 67
           MDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRT                  
Sbjct: 1   MDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRTGKLTEDLVTSSMLENVES 60

Query: 68  ------GKLTE-----------DSVTSSMLENVLTKPKNALGKQYKKMLRMNDVELHFTE 127
                 G + E            ++    L  VLTKPKNALGKQYKKMLRMNDVELHFTE
Sbjct: 61  GDLITYGLIPEFVGRCPILVSLSALDEDQLVQVLTKPKNALGKQYKKMLRMNDVELHFTE 120

Query: 128 NALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGCG 187
           NALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGCG
Sbjct: 121 NALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGCG 180

Query: 188 AKILCDVDELTQCSKSEIMRNLKGNDMVAGNEGRFSNGVEFPSVAIRL 201
           AKILCDVDELTQCSKSEIMRNLK NDMVAGNEGR SNGVEFPSVAIRL
Sbjct: 181 AKILCDVDELTQCSKSEIMRNLKVNDMVAGNEGRLSNGVEFPSVAIRL 228

[Close]

BLAST of CSPI05G18560.2 vs. NCBI nr
Match: gi|659121297|ref|XP_008460588.1| (PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X3 [Cucumis melo])

HSP 1 Score: 323.9 bits (829), Expect = 1.9e-85
Identity = 175/227 (77.09%), Postives = 183/227 (80.62%), Query Frame = 1


Query: 7   QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRTGKLTE--------DSVT 66
           QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRT +LTE        ++V 
Sbjct: 363 QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRTARLTEDLVTSSMLENVE 422

Query: 67  SS---------------------------MLENVLTKPKNALGKQYKKMLRMNDVELHFT 126
           SS                            L  VLTKPKNALGKQYKKM RMNDVELHFT
Sbjct: 423 SSDLVTYGLIPEFVGRCPILVSLSALDEDQLVQVLTKPKNALGKQYKKMFRMNDVELHFT 482

Query: 127 ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGC 186
           ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVD E+VGSVDA GC
Sbjct: 483 ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDGESVGSVDAPGC 542

Query: 187 GAKILCDVDELTQCSKSEIMRNLKGNDMVAGNEGRFSNGVEFPSVAI 199
           GAKILCDVDELT+CSKSEI+RNLKGNDMVA +EGRFSNGVEFPSVA+
Sbjct: 543 GAKILCDVDELTKCSKSEIIRNLKGNDMVADDEGRFSNGVEFPSVAM 589

[Close]

BLAST of CSPI05G18560.2 vs. NCBI nr
Match: gi|659121295|ref|XP_008460587.1| (PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 323.9 bits (829), Expect = 1.9e-85
Identity = 175/227 (77.09%), Postives = 183/227 (80.62%), Query Frame = 1


Query: 7   QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRTGKLTE--------DSVT 66
           QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRT +LTE        ++V 
Sbjct: 385 QMDTKNILFICGGAFVGLEKCISDRQHDSSIGFGAPVRASMRTARLTEDLVTSSMLENVE 444

Query: 67  SS---------------------------MLENVLTKPKNALGKQYKKMLRMNDVELHFT 126
           SS                            L  VLTKPKNALGKQYKKM RMNDVELHFT
Sbjct: 445 SSDLVTYGLIPEFVGRCPILVSLSALDEDQLVQVLTKPKNALGKQYKKMFRMNDVELHFT 504

Query: 127 ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDEEAVGSVDASGC 186
           ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVD E+VGSVDA GC
Sbjct: 505 ENALRMIARKAMKKNTGARGLRSILENILTEAMFEVPESNSIKAVLVDGESVGSVDAPGC 564

Query: 187 GAKILCDVDELTQCSKSEIMRNLKGNDMVAGNEGRFSNGVEFPSVAI 199
           GAKILCDVDELT+CSKSEI+RNLKGNDMVA +EGRFSNGVEFPSVA+
Sbjct: 565 GAKILCDVDELTKCSKSEIIRNLKGNDMVADDEGRFSNGVEFPSVAM 611

The following BLAST results are available for this feature:

BLAST of CSPI05G18560.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPX3_ARATH	9.1e-43	52.38	CLP protease regulatory subunit CLPX3, mitochondrial OS=Arabidopsis thaliana GN=...	[more]
CLPX2_ARATH	1.2e-42	55.79	CLP protease regulatory subunit CLPX2, mitochondrial OS=Arabidopsis thaliana GN=...	[more]
CLPX1_ARATH	3.9e-38	45.85	CLP protease regulatory subunit CLPX1, mitochondrial OS=Arabidopsis thaliana GN=...	[more]
CLPX_RUEPO	3.0e-30	43.71	ATP-dependent Clp protease ATP-binding subunit ClpX OS=Ruegeria pomeroyi (strain...	[more]
CLPX_CHESB	6.7e-30	46.06	ATP-dependent Clp protease ATP-binding subunit ClpX OS=Chelativorans sp. (strain...	[more]

BLAST of CSPI05G18560.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR77_CUCSA	4.2e-87	78.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G527380 PE=4 SV=1	[more]
K7N4V3_SOYBN	1.0e-53	70.32	Uncharacterized protein OS=Glycine max GN=GLYMA_20G213400 PE=4 SV=1	[more]
A0A0R0HUU5_SOYBN	6.3e-51	66.04	Uncharacterized protein OS=Glycine max GN=GLYMA_10G176800 PE=4 SV=1	[more]
A0A0B2RFB0_GLYSO	7.0e-50	66.88	ATP-dependent Clp protease ATP-binding subunit ClpX (Fragment) OS=Glycine soja G...	[more]
A0A067L0Y3_JATCU	2.0e-49	55.96	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24892 PE=4 SV=1	[more]

BLAST of CSPI05G18560.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G33360.1	5.1e-44	52.38	ATP-dependent Clp protease	[more]
AT5G49840.1	6.7e-44	55.79	ATP-dependent Clp protease	[more]
AT5G53350.1	2.2e-39	45.85	CLP protease regulatory subunit X	[more]

BLAST of CSPI05G18560.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450117\|ref\|XP_004142810.1\|	1.6e-87	78.60	PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondri...	[more]
gi\|778703780\|ref\|XP_011655426.1\|	1.6e-87	78.60	PREDICTED: mitochondrial clpX-like chaperone MCX1 isoform X3 [Cucumis sativus]	[more]
gi\|700196222\|gb\|KGN51399.1\|	6.0e-87	78.51	hypothetical protein Csa_5G527380 [Cucumis sativus]	[more]
gi\|659121297\|ref\|XP_008460588.1\|	1.9e-85	77.09	PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondri...	[more]
gi\|659121295\|ref\|XP_008460587.1\|	1.9e-85	77.09	PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondri...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR019489	Clp_ATPase_C
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0051082	unfolded protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI05G18560	CSPI05G18560	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI05G18560.2	CSPI05G18560.2-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G18560.2.utr3p1	CSPI05G18560.2.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G18560.2.cds6	CSPI05G18560.2.cds6	CDS
CSPI05G18560.2.cds5	CSPI05G18560.2.cds5	CDS
CSPI05G18560.2.cds4	CSPI05G18560.2.cds4	CDS
CSPI05G18560.2.cds3	CSPI05G18560.2.cds3	CDS
CSPI05G18560.2.cds2	CSPI05G18560.2.cds2	CDS
CSPI05G18560.2.cds1	CSPI05G18560.2.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G18560.2.utr5p1	CSPI05G18560.2.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019489	Clp ATPase, C-terminal	PFAM	PF10431	ClpB_D2-small	coord: 59..134 score: 1.7
IPR019489	Clp ATPase, C-terminal	SMART	SM01086	ClpB_D2_small_2	coord: 57..147 score: 8.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 8..128 score: 3.4
None	No IPR available	GENE3D	G3DSA:1.10.8.60		coord: 58..144 score: 4.5
None	No IPR available	PANTHER	PTHR11262	HSL AND CLP PROTEASE	coord: 7..156 score: 2.8
None	No IPR available	PANTHER	PTHR11262:SF9	ATP-DEPENDENT CLP PROTEASE	coord: 7..156 score: 2.8