CSPI05G10730.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI05G10730.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTIR-NBS-LRR-AAA+ATPase class resistance protein
LocationChr5 : 9270296 .. 9270726 (-)
Sequence length315
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAATTACGTCAAAACTCGTGAATCTATCACTTCATACTATTAAAGAAAAATCGAATAAGGTTGAAATGCATGACTTAATACAACAAATGGATCTGACAATTGCTCTTTCAAACACTTTCAAATCTGATGAAGAAAAAAGATTGTTGGTTGAAGAGGATGGTATGGATGTCCTAAATGGCAACAACGTAACAACTATCTGCACACAAACTTTGAATATGTATATTAATTATAAGAACAACTTTATTATTTTTGAATGACTTGAAATGTTTGTCTGTTTTTTTTTTATATATATAATTTGTAGGAAGCAAGAGTAGTTAAAGCCACAAAACTAAATTTTCCTCAACCAATGGAGCTGGAAATTGATTCAAAAGCTATTGAAAGAGTGAAGAACCTGGTAGTGCTCAAAGTTCGGAATGGCCACTTCTTCTAA

mRNA sequence

GGAATTACGTCAAAACTCGTGAATCTATCACTTCATACTATTAAAGAAAAATCGAATAAGGTTGAAATGCATGACTTAATACAACAAATGGATCTGACAATTGCTCTTTCAAACACTTTCAAATCTGATGAAGAAAAAAGATTGTTGGTTGAAGAGGATGGTATGGATGTCCTAAATGGCAACAACGAAGCAAGAGTAGTTAAAGCCACAAAACTAAATTTTCCTCAACCAATGGAGCTGGAAATTGATTCAAAAGCTATTGAAAGAGTGAAGAACCTGGTAGTGCTCAAAGTTCGGAATGGCCACTTCTTCTAA

Coding sequence (CDS)

GGAATTACGTCAAAACTCGTGAATCTATCACTTCATACTATTAAAGAAAAATCGAATAAGGTTGAAATGCATGACTTAATACAACAAATGGATCTGACAATTGCTCTTTCAAACACTTTCAAATCTGATGAAGAAAAAAGATTGTTGGTTGAAGAGGATGGTATGGATGTCCTAAATGGCAACAACGAAGCAAGAGTAGTTAAAGCCACAAAACTAAATTTTCCTCAACCAATGGAGCTGGAAATTGATTCAAAAGCTATTGAAAGAGTGAAGAACCTGGTAGTGCTCAAAGTTCGGAATGGCCACTTCTTCTAA
Homology
[Close]
BLAST of CSPI05G10730.1 vs. TrEMBL
Match: A0A0A0KP48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G207930 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.3e-33
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 30  MDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER 89
           MD+TIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER
Sbjct: 1   MDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER 60

Query: 90  VKNLVVLKVRNGHFF 105
           VKNLVVLKVRNGHFF
Sbjct: 61  VKNLVVLKVRNGHFF 75

[Close]
BLAST of CSPI05G10730.1 vs. TrEMBL
Match: A0A0A0LJ96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G059700 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.4e-24
Identity = 62/98 (63.27%), Postives = 79/98 (80.61%), Query Frame = 1 

Query: 3   TSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNN 62
           T+KL+NLSL TI+   N+++MHDLIQQM  +I LS TF S + KRLL+++D MDVLNGN 
Sbjct: 475 TTKLMNLSLLTIE--FNRIKMHDLIQQMGRSIHLSETFTSHKRKRLLIKDDAMDVLNGNK 534

Query: 63  EARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
           EAR VK  KL+FP+P +L+IDS+A E+VKNLVVL VRN
Sbjct: 535 EARAVKVIKLDFPRPTQLDIDSRAFEKVKNLVVLDVRN 570

[Close]
BLAST of CSPI05G10730.1 vs. TrEMBL
Match: D9I8I5_CUCSA (Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-23
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 1 

Query: 1   GITSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNG 60
           GIT KL+NLSL TI  + N+VEMH++IQQM  TI LS T KS + KRLL+++D MDVLNG
Sbjct: 436 GIT-KLMNLSLLTIG-RFNRVEMHNIIQQMGRTIHLSETSKSHKRKRLLIKDDAMDVLNG 495

Query: 61  NNEARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
           N EAR VK  KLNFP+P +L+IDS+A ++VKNLVVL+V N
Sbjct: 496 NKEARAVKVIKLNFPKPTKLDIDSRAFDKVKNLVVLEVGN 533

[Close]
BLAST of CSPI05G10730.1 vs. TrEMBL
Match: A0A0A0LGB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021540 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-23
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 1 

Query: 1   GITSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNG 60
           GIT KL+NLSL TI  + N+VEMH++IQQM  TI LS T KS + KRLL+++D MDVLNG
Sbjct: 436 GIT-KLMNLSLLTIG-RFNRVEMHNIIQQMGRTIHLSETSKSHKRKRLLIKDDAMDVLNG 495

Query: 61  NNEARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
           N EAR VK  KLNFP+P +L+IDS+A ++VKNLVVL+V N
Sbjct: 496 NKEARAVKVIKLNFPKPTKLDIDSRAFDKVKNLVVLEVGN 533

[Close]
BLAST of CSPI05G10730.1 vs. TrEMBL
Match: E7CHD4_CUCSA (Putative NBS-LRR protein OS=Cucumis sativus PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-23
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 1 

Query: 1   GITSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNG 60
           GIT KL+NLSL TI  + N+VEMH++IQQM  TI LS T KS + KRLL+++D MDVLNG
Sbjct: 254 GIT-KLMNLSLLTIG-RFNRVEMHNIIQQMGRTIHLSETSKSHKRKRLLIKDDAMDVLNG 313

Query: 61  NNEARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
           N EAR VK  KLNFP+P +L+IDS+A ++VKNLVVL+V N
Sbjct: 314 NKEARAVKVIKLNFPKPTKLDIDSRAFDKVKNLVVLEVGN 351

[Close]
BLAST of CSPI05G10730.1 vs. NCBI nr
Match: gi|700195487|gb|KGN50664.1| (hypothetical protein Csa_5G207930 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 7.6e-33
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 30  MDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER 89
           MD+TIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER
Sbjct: 1   MDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER 60

Query: 90  VKNLVVLKVRNGHFF 105
           VKNLVVLKVRNGHFF
Sbjct: 61  VKNLVVLKVRNGHFF 75

[Close]
BLAST of CSPI05G10730.1 vs. NCBI nr
Match: gi|659070463|ref|XP_008455228.1| (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 2.8e-27
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 1 

Query: 3   TSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNN 62
           T+KL+NLSL TI E SN++EMHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN 
Sbjct: 531 TTKLMNLSLLTIDEHSNRIEMHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNK 590

Query: 63  EARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
           EAR VK  KLNFP+P ELEIDS+A E+VK LVVL +RN
Sbjct: 591 EARAVKVIKLNFPKPTELEIDSRAFEKVKKLVVLDIRN 628

[Close]
BLAST of CSPI05G10730.1 vs. NCBI nr
Match: gi|659070467|ref|XP_008455243.1| (PREDICTED: TMV resistance protein N-like isoform X3 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 2.8e-27
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 1 

Query: 3   TSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNN 62
           T+KL+NLSL TI E SN++EMHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN 
Sbjct: 476 TTKLMNLSLLTIDEHSNRIEMHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNK 535

Query: 63  EARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
           EAR VK  KLNFP+P ELEIDS+A E+VK LVVL +RN
Sbjct: 536 EARAVKVIKLNFPKPTELEIDSRAFEKVKKLVVLDIRN 573

[Close]
BLAST of CSPI05G10730.1 vs. NCBI nr
Match: gi|659070469|ref|XP_008455251.1| (PREDICTED: TMV resistance protein N-like isoform X4 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 2.8e-27
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 1 

Query: 3   TSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNN 62
           T+KL+NLSL TI E SN++EMHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN 
Sbjct: 269 TTKLMNLSLLTIDEHSNRIEMHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNK 328

Query: 63  EARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
           EAR VK  KLNFP+P ELEIDS+A E+VK LVVL +RN
Sbjct: 329 EARAVKVIKLNFPKPTELEIDSRAFEKVKKLVVLDIRN 366

[Close]
BLAST of CSPI05G10730.1 vs. NCBI nr
Match: gi|659070465|ref|XP_008455236.1| (PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 2.8e-27
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 1 

Query: 3   TSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNN 62
           T+KL+NLSL TI E SN++EMHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN 
Sbjct: 521 TTKLMNLSLLTIDEHSNRIEMHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNK 580

Query: 63  EARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
           EAR VK  KLNFP+P ELEIDS+A E+VK LVVL +RN
Sbjct: 581 EARAVKVIKLNFPKPTELEIDSRAFEKVKKLVVLDIRN 618

The following BLAST results are available for this feature:
BLAST of CSPI05G10730.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G10730.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KP48_CUCSA5.3e-3398.67Uncharacterized protein OS=Cucumis sativus GN=Csa_5G207930 PE=4 SV=1[more]
A0A0A0LJ96_CUCSA3.4e-2463.27Uncharacterized protein OS=Cucumis sativus GN=Csa_2G059700 PE=4 SV=1[more]
D9I8I5_CUCSA1.7e-2364.00Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus PE=4 SV=1[more]
A0A0A0LGB6_CUCSA1.7e-2364.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021540 PE=4 SV=1[more]
E7CHD4_CUCSA1.7e-2364.00Putative NBS-LRR protein OS=Cucumis sativus PE=3 SV=1[more]
BLAST of CSPI05G10730.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G10730.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195487|gb|KGN50664.1|7.6e-3398.67hypothetical protein Csa_5G207930 [Cucumis sativus][more]
gi|659070463|ref|XP_008455228.1|2.8e-2768.37PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo][more]
gi|659070467|ref|XP_008455243.1|2.8e-2768.37PREDICTED: TMV resistance protein N-like isoform X3 [Cucumis melo][more]
gi|659070469|ref|XP_008455251.1|2.8e-2768.37PREDICTED: TMV resistance protein N-like isoform X4 [Cucumis melo][more]
gi|659070465|ref|XP_008455236.1|2.8e-2768.37PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0005575 cellular_component
molecular_function GO:0043531 ADP binding
molecular_function GO:0005524 ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI05G10730CSPI05G10730gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI05G10730.1CSPI05G10730.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI05G10730.1.cds2CSPI05G10730.1.cds2CDS
CSPI05G10730.1.cds1CSPI05G10730.1.cds1CDS