CSPI05G06230.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI05G06230.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 5623427 .. 5623618 (+)
Sequence length192
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGAGAGTGAAGAGTGTTTTGCGGAGAAATGTGGGGCGCCGCTGTATGAGATCCGAACCGGAATTAAAGGTTCTCGTTTATTTCGAATATGGCGCCAAGTTCGCCCCCTTGCTGCTTCATCAACGGTCAAAAAGGGGTGGCGTAAGATTATATGCAGCGGGATTTCCAACAATTTAATTTTTATATAA

mRNA sequence

ATGGGGGAGAGTGAAGAGTGTTTTGCGGAGAAATGTGGGGCGCCGCTGTATGAGATCCGAACCGGAATTAAAGGTTCTCGTTTATTTCGAATATGGCGCCAAGTTCGCCCCCTTGCTGCTTCATCAACGGTCAAAAAGGGGTGGCGTAAGATTATATGCAGCGGGATTTCCAACAATTTAATTTTTATATAA

Coding sequence (CDS)

ATGGGGGAGAGTGAAGAGTGTTTTGCGGAGAAATGTGGGGCGCCGCTGTATGAGATCCGAACCGGAATTAAAGGTTCTCGTTTATTTCGAATATGGCGCCAAGTTCGCCCCCTTGCTGCTTCATCAACGGTCAAAAAGGGGTGGCGTAAGATTATATGCAGCGGGATTTCCAACAATTTAATTTTTATATAA
Homology
[Close]
BLAST of CSPI05G06230.1 vs. TrEMBL
Match: A0A0A0KKG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G157925 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.8e-29
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MGESEECFAEKCGAPLYEIRTGIKGSRLFRIWRQVRPLAASSTVKKGWRKIICSGISNNL 60
          MGESEECFAEKCGAPLYEIRTG+KGSRLFRIWRQVRPLAASSTVKKGWRKIICSGISNNL
Sbjct: 1  MGESEECFAEKCGAPLYEIRTGLKGSRLFRIWRQVRPLAASSTVKKGWRKIICSGISNNL 60

Query: 61 IFI 64
          IFI
Sbjct: 61 IFI 63

[Close]
BLAST of CSPI05G06230.1 vs. NCBI nr
Match: gi|700195008|gb|KGN50185.1| (hypothetical protein Csa_5G157925 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 6.9e-29
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MGESEECFAEKCGAPLYEIRTGIKGSRLFRIWRQVRPLAASSTVKKGWRKIICSGISNNL 60
          MGESEECFAEKCGAPLYEIRTG+KGSRLFRIWRQVRPLAASSTVKKGWRKIICSGISNNL
Sbjct: 1  MGESEECFAEKCGAPLYEIRTGLKGSRLFRIWRQVRPLAASSTVKKGWRKIICSGISNNL 60

Query: 61 IFI 64
          IFI
Sbjct: 61 IFI 63

The following BLAST results are available for this feature:
BLAST of CSPI05G06230.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G06230.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKG3_CUCSA4.8e-2998.41Uncharacterized protein OS=Cucumis sativus GN=Csa_5G157925 PE=4 SV=1[more]
BLAST of CSPI05G06230.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G06230.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195008|gb|KGN50185.1|6.9e-2998.41hypothetical protein Csa_5G157925 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI05G06230CSPI05G06230gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI05G06230.1CSPI05G06230.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI05G06230.1.cds1CSPI05G06230.1.cds1CDS