CSPI04G27440.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI04G27440.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 24098913 .. 24099372 (-)
Sequence length381
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGTCGTGGATTTGTATTTAACAGAACAGACTAATGGCTGTAGTCGGAACTTTTCATCATTTTGGTTGGCGGCTGTGTTCACTGTTGGCCGCTTGGTGGTGAATCTCGAACCCTTTATTACATTGGATTATATTTTCGTTTCACCAGTCGGTCACCGCGTGCCACTTTCATTCATTGTAAGCTCTTTCAGGGTAAAAAAATCTTTTATAAATAATTCTTTAAATGTGTCTGGACTTGGACCGGGACTTGGACCGGGACCTGGACCTGGACCTGGACCTGGACCACACCATTTCTTAATTGATCCAGGTATGGTAAAATTTCCTCGTCAGTTCCACATTTTACATTCTCCACATGGAAAAACACTACCACTTTTGCATGTATATTTTCTAGTTCACGGTTGGTTCCAAAATTAGAGCTTATGCCGTTTTCTTTTCCATTTTCTTAAAGAAATTATAA

mRNA sequence

ATGTGTGTCGTGGATTTGTATTTAACAGAACAGACTAATGGCTGTAGTCGGAACTTTTCATCATTTTGGTTGGCGGCTGTGTTCACTGTTGGCCGCTTGGTGGTGAATCTCGAACCCTTTATTACATTGGATTATATTTTCGTTTCACCAGTCGGTCACCGCGTGCCACTTTCATTCATTGTAAGCTCTTTCAGGGTAAAAAAATCTTTTATAAATAATTCTTTAAATGTGTCTGGACTTGGACCGGGACTTGGACCGGGACCTGGACCTGGACCTGGACCTGGACCACACCATTTCTTAATTGATCCAGGTATGTTCACGGTTGGTTCCAAAATTAGAGCTTATGCCGTTTTCTTTTCCATTTTCTTAAAGAAATTATAA

Coding sequence (CDS)

ATGTGTGTCGTGGATTTGTATTTAACAGAACAGACTAATGGCTGTAGTCGGAACTTTTCATCATTTTGGTTGGCGGCTGTGTTCACTGTTGGCCGCTTGGTGGTGAATCTCGAACCCTTTATTACATTGGATTATATTTTCGTTTCACCAGTCGGTCACCGCGTGCCACTTTCATTCATTGTAAGCTCTTTCAGGGTAAAAAAATCTTTTATAAATAATTCTTTAAATGTGTCTGGACTTGGACCGGGACTTGGACCGGGACCTGGACCTGGACCTGGACCTGGACCACACCATTTCTTAATTGATCCAGGTATGTTCACGGTTGGTTCCAAAATTAGAGCTTATGCCGTTTTCTTTTCCATTTTCTTAAAGAAATTATAA
Homology
[Close]
BLAST of CSPI04G27440.1 vs. TrEMBL
Match: A0A0A0L0V1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665400 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.1e-51
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 1 

Query: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60
           MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI
Sbjct: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60

Query: 61  VSSFRVKKSFINNSLNVSGLGPGLGPGPGPGPGPGPHHFLIDPGM 106
           VSSFRVKKSFINNSLNVSGLGPGL  GPGPGPGPGPHHFLIDPGM
Sbjct: 61  VSSFRVKKSFINNSLNVSGLGPGL--GPGPGPGPGPHHFLIDPGM 103

[Close]
BLAST of CSPI04G27440.1 vs. NCBI nr
Match: gi|700200402|gb|KGN55560.1| (hypothetical protein Csa_4G665400 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 4.4e-51
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 1 

Query: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60
           MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI
Sbjct: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60

Query: 61  VSSFRVKKSFINNSLNVSGLGPGLGPGPGPGPGPGPHHFLIDPGM 106
           VSSFRVKKSFINNSLNVSGLGPGL  GPGPGPGPGPHHFLIDPGM
Sbjct: 61  VSSFRVKKSFINNSLNVSGLGPGL--GPGPGPGPGPHHFLIDPGM 103

The following BLAST results are available for this feature:
BLAST of CSPI04G27440.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G27440.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0V1_CUCSA3.1e-5198.10Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665400 PE=4 SV=1[more]
BLAST of CSPI04G27440.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G27440.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200402|gb|KGN55560.1|4.4e-5198.10hypothetical protein Csa_4G665400 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI04G27440CSPI04G27440gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI04G27440.1CSPI04G27440.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G27440.1.cds2CSPI04G27440.1.cds2CDS
CSPI04G27440.1.cds1CSPI04G27440.1.cds1CDS