CSPI04G27440 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G27440
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 24098913 .. 24099372 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGTCGTGGATTTGTATTTAACAGAACAGACTAATGGCTGTAGTCGGAACTTTTCATCATTTTGGTTGGCGGCTGTGTTCACTGTTGGCCGCTTGGTGGTGAATCTCGAACCCTTTATTACATTGGATTATATTTTCGTTTCACCAGTCGGTCACCGCGTGCCACTTTCATTCATTGTAAGCTCTTTCAGGGTAAAAAAATCTTTTATAAATAATTCTTTAAATGTGTCTGGACTTGGACCGGGACTTGGACCGGGACCTGGACCTGGACCTGGACCTGGACCACACCATTTCTTAATTGATCCAGGTATGGTAAAATTTCCTCGTCAGTTCCACATTTTACATTCTCCACATGGAAAAACACTACCACTTTTGCATGTATATTTTCTAGTTCACGGTTGGTTCCAAAATTAGAGCTTATGCCGTTTTCTTTTCCATTTTCTTAAAGAAATTATAA

mRNA sequence

ATGTGTGTCGTGGATTTGTATTTAACAGAACAGACTAATGGCTGTAGTCGGAACTTTTCATCATTTTGGTTGGCGGCTGTGTTCACTGTTGGCCGCTTGGTGGTGAATCTCGAACCCTTTATTACATTGGATTATATTTTCGTTTCACCAGTCGGTCACCGCGTGCCACTTTCATTCATTGTAAGCTCTTTCAGGGTAAAAAAATCTTTTATAAATAATTCTTTAAATGTGTCTGGACTTGGACCGGGACTTGGACCGGGACCTGGACCTGGACCTGGACCTGGACCACACCATTTCTTAATTGATCCAGGTATGTTCACGGTTGGTTCCAAAATTAGAGCTTATGCCGTTTTCTTTTCCATTTTCTTAAAGAAATTATAA

Coding sequence (CDS)

ATGTGTGTCGTGGATTTGTATTTAACAGAACAGACTAATGGCTGTAGTCGGAACTTTTCATCATTTTGGTTGGCGGCTGTGTTCACTGTTGGCCGCTTGGTGGTGAATCTCGAACCCTTTATTACATTGGATTATATTTTCGTTTCACCAGTCGGTCACCGCGTGCCACTTTCATTCATTGTAAGCTCTTTCAGGGTAAAAAAATCTTTTATAAATAATTCTTTAAATGTGTCTGGACTTGGACCGGGACTTGGACCGGGACCTGGACCTGGACCTGGACCTGGACCACACCATTTCTTAATTGATCCAGGTATGTTCACGGTTGGTTCCAAAATTAGAGCTTATGCCGTTTTCTTTTCCATTTTCTTAAAGAAATTATAA
Homology
[Close]
BLAST of CSPI04G27440 vs. TrEMBL
Match: A0A0A0L0V1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665400 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.1e-51
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 1 

Query: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60
           MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI
Sbjct: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60

Query: 61  VSSFRVKKSFINNSLNVSGLGPGLGPGPGPGPGPGPHHFLIDPGM 106
           VSSFRVKKSFINNSLNVSGLGPGL  GPGPGPGPGPHHFLIDPGM
Sbjct: 61  VSSFRVKKSFINNSLNVSGLGPGL--GPGPGPGPGPHHFLIDPGM 103

[Close]
BLAST of CSPI04G27440 vs. NCBI nr
Match: gi|700200402|gb|KGN55560.1| (hypothetical protein Csa_4G665400 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 4.4e-51
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 1 

Query: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60
           MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI
Sbjct: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60

Query: 61  VSSFRVKKSFINNSLNVSGLGPGLGPGPGPGPGPGPHHFLIDPGM 106
           VSSFRVKKSFINNSLNVSGLGPGL  GPGPGPGPGPHHFLIDPGM
Sbjct: 61  VSSFRVKKSFINNSLNVSGLGPGL--GPGPGPGPGPHHFLIDPGM 103

The following BLAST results are available for this feature:
BLAST of CSPI04G27440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G27440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0V1_CUCSA3.1e-5198.10Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665400 PE=4 SV=1[more]
BLAST of CSPI04G27440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G27440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200402|gb|KGN55560.1|4.4e-5198.10hypothetical protein Csa_4G665400 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G27440.1CSPI04G27440.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G27440CsaV3_4G037830Cucumber (Chinese Long) v3cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G27440Cucurbita pepo (Zucchini)cpecpiB011
CSPI04G27440Bottle gourd (USVL1VR-Ls)cpilsiB286
CSPI04G27440Melon (DHL92) v3.6.1cpimedB302
CSPI04G27440Cucumber (Gy14) v2cgybcpiB169
CSPI04G27440Silver-seed gourdcarcpiB0118
CSPI04G27440Cucumber (Chinese Long) v3cpicucB245
CSPI04G27440Watermelon (97103) v2cpiwmbB287
CSPI04G27440Wax gourdcpiwgoB418
CSPI04G27440Wild cucumber (PI 183967)cpicpiB166
CSPI04G27440Cucumber (Gy14) v1cgycpiB409
CSPI04G27440Cucurbita maxima (Rimu)cmacpiB025
CSPI04G27440Cucurbita moschata (Rifu)cmocpiB016
CSPI04G27440Cucumber (Chinese Long) v2cpicuB181
CSPI04G27440Cucumber (Chinese Long) v2cpicuB204
CSPI04G27440Melon (DHL92) v3.5.1cpimeB311
CSPI04G27440Watermelon (Charleston Gray)cpiwcgB290
CSPI04G27440Watermelon (97103) v1cpiwmB284