CSPI04G26510.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G26510.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 23613537 .. 23613804 (+)
Sequence length	237

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCCGCTGAAGCAGAGCGTCCCATTGTGCGGACCACCCCGCGGGTTCGCATTCATTTCAGCCGGCGGCTGTCAGATTATTGATCAAGGGGAATTCCCCCTCTTTCGTGGTCCCCAGTTCTCCTTCCTCCACGTGTTCCCTTCCCATTCGCTTATTCCAAGCGTGCTTCCTCCCCGGTCCCCACTTTTGTGGTCCAAACGCCTTCCTCTCGACGCGTGTCGACCCGTCCTTGTCCCGCGAGTGGCGGAGAGAGAACCGACGTAA

mRNA sequence

ATGGGTCCCGCTGAAGCAGAGCGTCCCATTGTGCGGACCACCCCGCGGATTATTGATCAAGGGGAATTCCCCCTCTTTCGTGGTCCCCAGTTCTCCTTCCTCCACGTGTTCCCTTCCCATTCGCTTATTCCAAGCGTGCTTCCTCCCCGGTCCCCACTTTTGTGGTCCAAACGCCTTCCTCTCGACGCGTGTCGACCCGTCCTTGTCCCGCGAGTGGCGGAGAGAGAACCGACGTAA

Coding sequence (CDS)

ATGGGTCCCGCTGAAGCAGAGCGTCCCATTGTGCGGACCACCCCGCGGATTATTGATCAAGGGGAATTCCCCCTCTTTCGTGGTCCCCAGTTCTCCTTCCTCCACGTGTTCCCTTCCCATTCGCTTATTCCAAGCGTGCTTCCTCCCCGGTCCCCACTTTTGTGGTCCAAACGCCTTCCTCTCGACGCGTGTCGACCCGTCCTTGTCCCGCGAGTGGCGGAGAGAGAACCGACGTAA

Homology

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BLAST of CSPI04G26510.1 vs. TrEMBL
Match: A0A0A0L0H7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652720 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-26
Identity = 64/78 (82.05%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 1  MGPAEAERPIVRTTPRIIDQGEFPLFRGPQFSFLHVFPSHSLIPSVLPPRSPLLWSKRLP 60
          MGPAEAERPIVRTTPR              FSFLHVFPSHSLIPSVLPPRSPLLWSKRLP
Sbjct: 1  MGPAEAERPIVRTTPR--------------FSFLHVFPSHSLIPSVLPPRSPLLWSKRLP 60

Query: 61 LDACRPVLVPRVAEREPT 79
          LDACRPVLVPRVAEREPT
Sbjct: 61 LDACRPVLVPRVAEREPT 64

[Close]

BLAST of CSPI04G26510.1 vs. NCBI nr
Match: gi|700200302|gb|KGN55460.1| (hypothetical protein Csa_4G652720 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 4.0e-26
Identity = 64/78 (82.05%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 1  MGPAEAERPIVRTTPRIIDQGEFPLFRGPQFSFLHVFPSHSLIPSVLPPRSPLLWSKRLP 60
          MGPAEAERPIVRTTPR              FSFLHVFPSHSLIPSVLPPRSPLLWSKRLP
Sbjct: 1  MGPAEAERPIVRTTPR--------------FSFLHVFPSHSLIPSVLPPRSPLLWSKRLP 60

Query: 61 LDACRPVLVPRVAEREPT 79
          LDACRPVLVPRVAEREPT
Sbjct: 61 LDACRPVLVPRVAEREPT 64

The following BLAST results are available for this feature:

BLAST of CSPI04G26510.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G26510.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0H7_CUCSA	2.8e-26	82.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652720 PE=4 SV=1	[more]

BLAST of CSPI04G26510.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G26510.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200302\|gb\|KGN55460.1\|	4.0e-26	82.05	hypothetical protein Csa_4G652720 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G26510	CSPI04G26510	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G26510.1	CSPI04G26510.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G26510.1.cds1	CSPI04G26510.1.cds1	CDS
CSPI04G26510.1.cds2	CSPI04G26510.1.cds2	CDS