CSPI04G21300.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGCCGTCACAATCTCACTATTCTTTTCTCCTTCAAAATTCCGATTAAATTCGACGAAAATTTCAATTTGGCGGCCGTAATCATACTCTTCTTCCCACTTCTTAGATTTATGAACTAAGCCAGTTTTCATTTTTCTTTTTTTCTTTTCTGAAGCTTCTGTAGGTATGTAAGGTTCTTCGCAAAGCTTTTGTCTTTAATTATTCACTATTGTTTTAATTTCGCGGATTCATGAATGTCTCTATGATCCATACTTGTTATGCTGAGCTCAATCAATTGAGTGAGTTCAAATTTCATGAAGAATTGAATTTCTGGTGCTTGGGTTGGGTTGGGTTTTGTTTGTCCCGACTTGGGTCAATTTCTATGCGTAATTCTGGCTTCTTTCTGGGCAGAGTTCTCTATTGCCTCTACTATTGGATATTGATAGTCTTGGAGTGTTTAGAGTGTAACAAACTATAACAACATCTTATTTAACTGACAAGTTGCAGAGATGGGCTTTATCTTTTTAGATTCTTGGATTTCTACTTATTTTTTATAATTCTTGTTCAGCTAAGCAGACCGTTGTAGCTTATACCATCACGGCTGTATTGACTCGCACCCTTTTATGGCATCAGAGGGATCTGATTCAAAGGTACGCTTTCTTTTAACCCCCTCGTCCCAGATAAAACGTTTCAGGGTATTATGAGATTTTCGTGTAAATAAAGTGTTTAGAAACTAGTGGATTGTAAAGATGACTACGTGCAGTGAGGGCACAGTTGTTTAAAGGAGAAGATGGATCAATGGGGCCATGTTTGTGTGGTCGGCATAGGTGGAGCCCATTTCTTATGTTAAGCTAAAAAAAGTATTTTTTTTTGCCATGTAACTCTGTTCCATTTTCTTTCATTTTTCTTCGAATCAACAAGAGGAGAGAGGTTGCAGTTTCTCAAGTGATTGTGTGAAGACTCTAGGTCTTACTTATGATAGCATTGATTCAAACTATGATTGCAAGCAAACAGCTAACTGGCTGTATTCGAGAGCACCGGACCTCTCCCTATATAACTATTGTTCGATTGCAAAATATCCAAAAAAACATAAAGCAAACACAAGAGACGAACGTACCAATAGCCTCCTGCCACATGCAAGCCCAACCAAACACAATTCAAGATAAACCTCCAGCCCATTAATGGCTGGGCCCACTCCCATTTCTCTTTCTACCCCTTCTATAACGAGTTGTCGAGTAAGGTGATTTATAGGGTGGAGTAAAAAGCCTATAGGGGTATTGTGAAAGTAGTTTGTTGGTGTAAAAGAGACAATACATGGTGGTAAACGAGAAAAGTTTTGGTGTAGCTGACAAAGAGCCTAGAGGGTAGGAGAAAGAAAGGGGCGTTTAGGTAGTGATTGAATGGTTCGGAAGTTGAACAAGGGTAACCCAACACTCAAAACACATGGAAGTACATATGCCTGAGTAGAGGAAGGAGGTAGTGAGATCCTGATATTTGGTGGGTGTGAATAGGATAGTTGAAATTTTATGACCATTTTAGACCATGAAGATTCTTCCTAGCTAATAAGGAGTTTGCTGTAACTTGTTATGTTTAGTATTACTCCAATTGGAATTATGGTTGTCCATGTTCAAGTTTCAATATAATTAAATATACTGTAACCCATCAACTTATGCTTTTGGATTTTTTTGGTGATTTAACATGGTATTAGACTAGGAGGCCATTATTCCTGTAATGTCATTTCGTCTCCAATTAATATTGGTTTATGCTTGCTGGGTCTTCTATACAATTTCAATCCCACAAGTTAGGGAGAGTGTTAAAGTATTTGTTTCTAGAACTGAAGGCCCTTGAATTGTTAATCACGGTCTAGTGACACGGTAGTGGTTCATCCACCAAATTTGGGTTCTTGTCTCCTTAGAACTAAAGGACACAAATGTACAACCTATAGAATAGATCCTATTTAAGTAAGGTCATGAAGAATGTTCAAGTATTGATACCATAACCTATTAACTCAAGCTTTTGGGTTTATTGGTGATTAACACTCCACTTGATTTATTATGTATTGTAGAACCCTTAACTTTTGTGGTATTCTAACAAATCAAGAGTTTCAAGGGAAAGTAAGAGCATTCTTCAAACAAAATTCAATTCTACTAGATAATAATTCATTTGACAACGCTTTGGTATTTCCCCTTTGAGAATTTATGATTAAGGTTAAAATTTTTGGTAAGTTTATATAACATTATCTCTCCATTTCTTTTTGCAGTTATCTTTCTAAGCATTTAATATCGATTGGAGTCGTTTTTATGAGTCCTAGGATCACTTTTCTTTTTAAATTTGTGTCGACTATAGTGAAGAATAAGTTGTATATATACTAAAATTGGGAGAGTTGATTGCACTTGAAATGGCATAAGACCAAACAAATTTGAAGGTAAAACAGAGTACACTAACCAGTTTGAAGAGAAAAGCTACAAGTACGTTGAGAGATGCTAAAGAAAACAGCTTTACTTTTCAAAAAAGAGTGCCAGTAAGTTCTGATATTTTAGCTACAACTTGGTCATAGTCAGCCTTGAGTTTCTATTCTTTAGTTCATCCAAGCTCCCCTTTGTTTGGCTTAGTTTATATTAGCACACAACATGTTGGCCTCGTAGTCTTCATCCATCTGACACTGGCAAGATCTTTCTTGGAGGGAACATATATGTAACAAATATCTGCTTCTTCACATAAGATTGGAACATGAGTGATCACGTCGGTGGGGGAAATGTTTCTAGCTATTATACAAAATCCTTATTGGCCGCATCTTATGCTTTTGACTACCTCCTTTACCCCTCACCCAAGCACTTGTACTAAGTAGCTTTGCGAACAAGCTTGAGGGTGTGCTTGCAGAGCTTTTTGCTGGCAAGGGTTTTGGCAATCGGAGCAAGAGCCAACAACTTCTTCTTCTTCTTCTTCTTTTCTTTGTCCTTTTGATGCAAGTTCCCTGCCTTCCTATCACTGCTCGTTGCGTCCAATAAGAGGATTGACAGTGGAATTGCTGGAGAAAAATGGGTTTGTGATGACGACGAAGACTGCAGTCCGCTTGGGGTTTTATTGTCTTGACTATAGTGAAAAATTTCTTTCTTAAGTAGACTATTCTTGGCGGTGCTATAATTTATAACCACTTGTACAAAGATCCCCTTTTACACTCATCACTCATGGTTGACTAAGGATTGTTGTTGGATTGTCAATTATCCTTGATGATTTAGGTTTTAGCTATGCTTTATTTGATTGGTGTGCTTTGGTTGCCATCAATTTCCTCTTGATGGTTGGGGGCTTTTGTTGCAACACTGGGAGAAGGAATGTCTGTGTCTAGGATCCTAGTCCTTCTAAAGGGTTCTCACATAAATCTTGTTTTTCTTGCCTTGTAGACCCTTTTCCTTTGAGAAAGGATTAGAGTATCGATGTCGATATCAATATTCGAATTTTAGGTATCCGAATATATTGATACAATGTCAATTTTGACAAATATTTCTATAAATAAAAAAATAAAAAATTAGTTTAATTAATATTTGAGTTCCTTTTACTTCCAAACTACAAGTTTAAGACCTTGTTGTTAATATTCATATTCATATGAAGGTTTAAGGATGGTATATATATATGTACACTCACATATATTAATGTTTTGTGTATTTATAAAAAATATCAGAAATATTGATCAATCCTTGATATTGATCCCTAATTTTACGAGAACAAATATATCGTCATAGTCATGGATTTATTGACATGCCAATGAATATTTCAATCCTCACCCTTCAGTGAATTGGTCTTTTTCTTGTCGTGGAAGGTGAAAATTTTGAAGAAGGTTAAGTTTTCTCTAGCAGGTTCTCCATAGAAGAATTAATATCATCGGTAGGGGTTTAAGGAGGGTTTCCAACTTGGTGGTGCCTTTGTGTTGCATCCTCTCTGCAGGAGGGTGGTGTAGGACCTGGACTATATTCTCTGGTCATGCAGTTATGCACTTGCACATTGGAACAAGTTTTATTTTTGGTGCGAGTTTGGCCAGACATAGAGGTTTAAAAGATATGATTGATGAGTTTTTTCTTCACCATCCGTTTCATGAGAAAGGAAGGTTTTCTGTGGCATGTTGGAGCATGTATTATTTCAGTAGAATTTTTAGAGGGGTTGGGAGGCTCTGAGTGAGGTGTGGTTATGTGTTAGGTTCAATGTTTCTTTATGGGCTTTTGGGACTAATTTTTTTAAAAGTATATCCTCTAGGTTTTATTTTGTTAGATTTGAGGTCACTTATGTAGGTTGACTCCTTTTTTTGTGCCCATATATTTTTTCATTTTTTCATAGAAAAAAAGGATTGTTGTTGGGTTGATGCCTTTGGTAAAAAAAAAAGGAAGAGAGTCAACAATCTCTTTCCTTTGTCTTTCAGTGTGTACATTATGTGTTTAAGCTATTTATGCATGTAACTTTCATGTTCAGGATAAAACAACTAGCAATAAGCTTCTGGATGGTTTGAAGTACAATGTTGAAGTGGCAGAAAGTGTTGCTAATGAGGCGCAGGTGTAATATCATCTTTAGTTTTCACTTCATCTCTCATCCTTCTCCCTCTCTCAGTTAAGTTTAAATTTAAGTTTCCTCTTTGATGTAACTCTGAATCCAATTATTTCATGTAGCGTTTGCCAATATTGGAGGCAACACCATTATATGAGCAACTGCTGACTGTGTATCCCACTGCTGTGAGTTTCTTACATATTTCAATCTTTTCTTTGTCTACCTTCACTTAGAGTAGCTGCATTTGAAATGTGAACCTTGCTTATTCCTGAGTTTGTGAGCAAAAATAGAGTAACTATTTCATGGGCTCAGCCCATGCTGGTTGGTAGTTCTTATGTTTTTAGCGTATCATAGGATGATTATTCTTTTGACTGTCTGCATTCCTTTGAAAATTTAGGTGAAAACCAAGTTTTGAAAATTAGATAGATTTTAGATTTGTCAATTTCAATATCACTAGACGCAACTTAAAAAACCCCAATAACTAATATTGCTTCTACAAGAAATGGAATAATTATTTATGGAACATGGAATGGTGTACGCTGTACACTGTACACGGCAGACTGGGGCAAGGTTAGGTATCCTCTCCCTCTAAGAATCTATTATAATAATTTTTTCCAACTGGCTTGAATCAGGAAAGGGAAATGATTAGAGAAGGATCTGGACAAGGACTGCCATGTAGCAGGAATGAAATATGCTAA ATGGCATCAGAGGGATCTGATTCAAAGGATAAAACAACTAGCAATAAGCTTCTGGATGGTTTGAAGTACAATGTTGAAGTGGCAGAAAGTGTTGCTAATGAGGCGCAGCGTTTGCCAATATTGGAGGCAACACCATTATATGAGCAACTGCTGACTGTGTATCCCACTGCTGAAAGGGAAATGATTAGAGAAGGATCTGGACAAGGACTGCCATGTAGCAGGAATGAAATATGCTAA ATGGCATCAGAGGGATCTGATTCAAAGGATAAAACAACTAGCAATAAGCTTCTGGATGGTTTGAAGTACAATGTTGAAGTGGCAGAAAGTGTTGCTAATGAGGCGCAGCGTTTGCCAATATTGGAGGCAACACCATTATATGAGCAACTGCTGACTGTGTATCCCACTGCTGAAAGGGAAATGATTAGAGAAGGATCTGGACAAGGACTGCCATGTAGCAGGAATGAAATATGCTAA
BLAST of CSPI04G21300.1 vs. TrEMBL
Match: A0A0A0L2S4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G593920 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 1.5e-35 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1
BLAST of CSPI04G21300.1 vs. TrEMBL
Match: V7C004_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G051000g PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06 Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1
BLAST of CSPI04G21300.1 vs. TrEMBL
Match: I3T6D8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06 Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1
BLAST of CSPI04G21300.1 vs. TrEMBL
Match: A0A0S3T985_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G073100 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 2.4e-06 Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1
BLAST of CSPI04G21300.1 vs. TrEMBL
Match: A0A0L9VMN1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g220700 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 2.4e-06 Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1
BLAST of CSPI04G21300.1 vs. TAIR10
Match: AT1G17760.1 (AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 47.4 bits (111), Expect = 4.8e-06 Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1
BLAST of CSPI04G21300.1 vs. NCBI nr
Match: gi|700199749|gb|KGN54907.1| (hypothetical protein Csa_4G593920 [Cucumis sativus]) HSP 1 Score: 156.4 bits (394), Expect = 2.1e-35 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1
BLAST of CSPI04G21300.1 vs. NCBI nr
Match: gi|778695235|ref|XP_011653954.1| (PREDICTED: cleavage stimulation factor subunit 77 isoform X2 [Cucumis sativus]) HSP 1 Score: 111.3 bits (277), Expect = 7.7e-22 Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1
BLAST of CSPI04G21300.1 vs. NCBI nr
Match: gi|778695232|ref|XP_011653953.1| (PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis sativus]) HSP 1 Score: 111.3 bits (277), Expect = 7.7e-22 Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1
BLAST of CSPI04G21300.1 vs. NCBI nr
Match: gi|659082815|ref|XP_008442046.1| (PREDICTED: cleavage stimulation factor subunit 3 [Cucumis melo]) HSP 1 Score: 109.0 bits (271), Expect = 3.8e-21 Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 1
BLAST of CSPI04G21300.1 vs. NCBI nr
Match: gi|1009163056|ref|XP_015899759.1| (PREDICTED: cleavage stimulation factor subunit 77 [Ziziphus jujuba]) HSP 1 Score: 63.5 bits (153), Expect = 1.9e-07 Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
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