CSPI04G21300 (gene) Wild cucumber (PI 183967)

NameCSPI04G21300
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCleavage stimulation factor
LocationChr4 : 19775352 .. 19780559 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCGTCACAATCTCACTATTCTTTTCTCCTTCAAAATTCCGATTAAATTCGACGAAAATTTCAATTTGGCGGCCGTAATCATACTCTTCTTCCCACTTCTTAGATTTATGAACTAAGCCAGTTTTCATTTTTCTTTTTTTCTTTTCTGAAGCTTCTGTAGGTATGTAAGGTTCTTCGCAAAGCTTTTGTCTTTAATTATTCACTATTGTTTTAATTTCGCGGATTCATGAATGTCTCTATGATCCATACTTGTTATGCTGAGCTCAATCAATTGAGTGAGTTCAAATTTCATGAAGAATTGAATTTCTGGTGCTTGGGTTGGGTTGGGTTTTGTTTGTCCCGACTTGGGTCAATTTCTATGCGTAATTCTGGCTTCTTTCTGGGCAGAGTTCTCTATTGCCTCTACTATTGGATATTGATAGTCTTGGAGTGTTTAGAGTGTAACAAACTATAACAACATCTTATTTAACTGACAAGTTGCAGAGATGGGCTTTATCTTTTTAGATTCTTGGATTTCTACTTATTTTTTATAATTCTTGTTCAGCTAAGCAGACCGTTGTAGCTTATACCATCACGGCTGTATTGACTCGCACCCTTTTATGGCATCAGAGGGATCTGATTCAAAGGTACGCTTTCTTTTAACCCCCTCGTCCCAGATAAAACGTTTCAGGGTATTATGAGATTTTCGTGTAAATAAAGTGTTTAGAAACTAGTGGATTGTAAAGATGACTACGTGCAGTGAGGGCACAGTTGTTTAAAGGAGAAGATGGATCAATGGGGCCATGTTTGTGTGGTCGGCATAGGTGGAGCCCATTTCTTATGTTAAGCTAAAAAAAGTATTTTTTTTTGCCATGTAACTCTGTTCCATTTTCTTTCATTTTTCTTCGAATCAACAAGAGGAGAGAGGTTGCAGTTTCTCAAGTGATTGTGTGAAGACTCTAGGTCTTACTTATGATAGCATTGATTCAAACTATGATTGCAAGCAAACAGCTAACTGGCTGTATTCGAGAGCACCGGACCTCTCCCTATATAACTATTGTTCGATTGCAAAATATCCAAAAAAACATAAAGCAAACACAAGAGACGAACGTACCAATAGCCTCCTGCCACATGCAAGCCCAACCAAACACAATTCAAGATAAACCTCCAGCCCATTAATGGCTGGGCCCACTCCCATTTCTCTTTCTACCCCTTCTATAACGAGTTGTCGAGTAAGGTGATTTATAGGGTGGAGTAAAAAGCCTATAGGGGTATTGTGAAAGTAGTTTGTTGGTGTAAAAGAGACAATACATGGTGGTAAACGAGAAAAGTTTTGGTGTAGCTGACAAAGAGCCTAGAGGGTAGGAGAAAGAAAGGGGCGTTTAGGTAGTGATTGAATGGTTCGGAAGTTGAACAAGGGTAACCCAACACTCAAAACACATGGAAGTACATATGCCTGAGTAGAGGAAGGAGGTAGTGAGATCCTGATATTTGGTGGGTGTGAATAGGATAGTTGAAATTTTATGACCATTTTAGACCATGAAGATTCTTCCTAGCTAATAAGGAGTTTGCTGTAACTTGTTATGTTTAGTATTACTCCAATTGGAATTATGGTTGTCCATGTTCAAGTTTCAATATAATTAAATATACTGTAACCCATCAACTTATGCTTTTGGATTTTTTTGGTGATTTAACATGGTATTAGACTAGGAGGCCATTATTCCTGTAATGTCATTTCGTCTCCAATTAATATTGGTTTATGCTTGCTGGGTCTTCTATACAATTTCAATCCCACAAGTTAGGGAGAGTGTTAAAGTATTTGTTTCTAGAACTGAAGGCCCTTGAATTGTTAATCACGGTCTAGTGACACGGTAGTGGTTCATCCACCAAATTTGGGTTCTTGTCTCCTTAGAACTAAAGGACACAAATGTACAACCTATAGAATAGATCCTATTTAAGTAAGGTCATGAAGAATGTTCAAGTATTGATACCATAACCTATTAACTCAAGCTTTTGGGTTTATTGGTGATTAACACTCCACTTGATTTATTATGTATTGTAGAACCCTTAACTTTTGTGGTATTCTAACAAATCAAGAGTTTCAAGGGAAAGTAAGAGCATTCTTCAAACAAAATTCAATTCTACTAGATAATAATTCATTTGACAACGCTTTGGTATTTCCCCTTTGAGAATTTATGATTAAGGTTAAAATTTTTGGTAAGTTTATATAACATTATCTCTCCATTTCTTTTTGCAGTTATCTTTCTAAGCATTTAATATCGATTGGAGTCGTTTTTATGAGTCCTAGGATCACTTTTCTTTTTAAATTTGTGTCGACTATAGTGAAGAATAAGTTGTATATATACTAAAATTGGGAGAGTTGATTGCACTTGAAATGGCATAAGACCAAACAAATTTGAAGGTAAAACAGAGTACACTAACCAGTTTGAAGAGAAAAGCTACAAGTACGTTGAGAGATGCTAAAGAAAACAGCTTTACTTTTCAAAAAAGAGTGCCAGTAAGTTCTGATATTTTAGCTACAACTTGGTCATAGTCAGCCTTGAGTTTCTATTCTTTAGTTCATCCAAGCTCCCCTTTGTTTGGCTTAGTTTATATTAGCACACAACATGTTGGCCTCGTAGTCTTCATCCATCTGACACTGGCAAGATCTTTCTTGGAGGGAACATATATGTAACAAATATCTGCTTCTTCACATAAGATTGGAACATGAGTGATCACGTCGGTGGGGGAAATGTTTCTAGCTATTATACAAAATCCTTATTGGCCGCATCTTATGCTTTTGACTACCTCCTTTACCCCTCACCCAAGCACTTGTACTAAGTAGCTTTGCGAACAAGCTTGAGGGTGTGCTTGCAGAGCTTTTTGCTGGCAAGGGTTTTGGCAATCGGAGCAAGAGCCAACAACTTCTTCTTCTTCTTCTTCTTTTCTTTGTCCTTTTGATGCAAGTTCCCTGCCTTCCTATCACTGCTCGTTGCGTCCAATAAGAGGATTGACAGTGGAATTGCTGGAGAAAAATGGGTTTGTGATGACGACGAAGACTGCAGTCCGCTTGGGGTTTTATTGTCTTGACTATAGTGAAAAATTTCTTTCTTAAGTAGACTATTCTTGGCGGTGCTATAATTTATAACCACTTGTACAAAGATCCCCTTTTACACTCATCACTCATGGTTGACTAAGGATTGTTGTTGGATTGTCAATTATCCTTGATGATTTAGGTTTTAGCTATGCTTTATTTGATTGGTGTGCTTTGGTTGCCATCAATTTCCTCTTGATGGTTGGGGGCTTTTGTTGCAACACTGGGAGAAGGAATGTCTGTGTCTAGGATCCTAGTCCTTCTAAAGGGTTCTCACATAAATCTTGTTTTTCTTGCCTTGTAGACCCTTTTCCTTTGAGAAAGGATTAGAGTATCGATGTCGATATCAATATTCGAATTTTAGGTATCCGAATATATTGATACAATGTCAATTTTGACAAATATTTCTATAAATAAAAAAATAAAAAATTAGTTTAATTAATATTTGAGTTCCTTTTACTTCCAAACTACAAGTTTAAGACCTTGTTGTTAATATTCATATTCATATGAAGGTTTAAGGATGGTATATATATATGTACACTCACATATATTAATGTTTTGTGTATTTATAAAAAATATCAGAAATATTGATCAATCCTTGATATTGATCCCTAATTTTACGAGAACAAATATATCGTCATAGTCATGGATTTATTGACATGCCAATGAATATTTCAATCCTCACCCTTCAGTGAATTGGTCTTTTTCTTGTCGTGGAAGGTGAAAATTTTGAAGAAGGTTAAGTTTTCTCTAGCAGGTTCTCCATAGAAGAATTAATATCATCGGTAGGGGTTTAAGGAGGGTTTCCAACTTGGTGGTGCCTTTGTGTTGCATCCTCTCTGCAGGAGGGTGGTGTAGGACCTGGACTATATTCTCTGGTCATGCAGTTATGCACTTGCACATTGGAACAAGTTTTATTTTTGGTGCGAGTTTGGCCAGACATAGAGGTTTAAAAGATATGATTGATGAGTTTTTTCTTCACCATCCGTTTCATGAGAAAGGAAGGTTTTCTGTGGCATGTTGGAGCATGTATTATTTCAGTAGAATTTTTAGAGGGGTTGGGAGGCTCTGAGTGAGGTGTGGTTATGTGTTAGGTTCAATGTTTCTTTATGGGCTTTTGGGACTAATTTTTTTAAAAGTATATCCTCTAGGTTTTATTTTGTTAGATTTGAGGTCACTTATGTAGGTTGACTCCTTTTTTTGTGCCCATATATTTTTTCATTTTTTCATAGAAAAAAAGGATTGTTGTTGGGTTGATGCCTTTGGTAAAAAAAAAAGGAAGAGAGTCAACAATCTCTTTCCTTTGTCTTTCAGTGTGTACATTATGTGTTTAAGCTATTTATGCATGTAACTTTCATGTTCAGGATAAAACAACTAGCAATAAGCTTCTGGATGGTTTGAAGTACAATGTTGAAGTGGCAGAAAGTGTTGCTAATGAGGCGCAGGTGTAATATCATCTTTAGTTTTCACTTCATCTCTCATCCTTCTCCCTCTCTCAGTTAAGTTTAAATTTAAGTTTCCTCTTTGATGTAACTCTGAATCCAATTATTTCATGTAGCGTTTGCCAATATTGGAGGCAACACCATTATATGAGCAACTGCTGACTGTGTATCCCACTGCTGTGAGTTTCTTACATATTTCAATCTTTTCTTTGTCTACCTTCACTTAGAGTAGCTGCATTTGAAATGTGAACCTTGCTTATTCCTGAGTTTGTGAGCAAAAATAGAGTAACTATTTCATGGGCTCAGCCCATGCTGGTTGGTAGTTCTTATGTTTTTAGCGTATCATAGGATGATTATTCTTTTGACTGTCTGCATTCCTTTGAAAATTTAGGTGAAAACCAAGTTTTGAAAATTAGATAGATTTTAGATTTGTCAATTTCAATATCACTAGACGCAACTTAAAAAACCCCAATAACTAATATTGCTTCTACAAGAAATGGAATAATTATTTATGGAACATGGAATGGTGTACGCTGTACACTGTACACGGCAGACTGGGGCAAGGTTAGGTATCCTCTCCCTCTAAGAATCTATTATAATAATTTTTTCCAACTGGCTTGAATCAGGAAAGGGAAATGATTAGAGAAGGATCTGGACAAGGACTGCCATGTAGCAGGAATGAAATATGCTAA

mRNA sequence

ATGGCATCAGAGGGATCTGATTCAAAGGATAAAACAACTAGCAATAAGCTTCTGGATGGTTTGAAGTACAATGTTGAAGTGGCAGAAAGTGTTGCTAATGAGGCGCAGCGTTTGCCAATATTGGAGGCAACACCATTATATGAGCAACTGCTGACTGTGTATCCCACTGCTGAAAGGGAAATGATTAGAGAAGGATCTGGACAAGGACTGCCATGTAGCAGGAATGAAATATGCTAA

Coding sequence (CDS)

ATGGCATCAGAGGGATCTGATTCAAAGGATAAAACAACTAGCAATAAGCTTCTGGATGGTTTGAAGTACAATGTTGAAGTGGCAGAAAGTGTTGCTAATGAGGCGCAGCGTTTGCCAATATTGGAGGCAACACCATTATATGAGCAACTGCTGACTGTGTATCCCACTGCTGAAAGGGAAATGATTAGAGAAGGATCTGGACAAGGACTGCCATGTAGCAGGAATGAAATATGCTAA
BLAST of CSPI04G21300 vs. TrEMBL
Match: A0A0A0L2S4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G593920 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.5e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1

Query: 1  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAERE 60
          MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAERE
Sbjct: 1  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAERE 60

Query: 61 MIREGSGQGLPCSRNEIC 79
          MIREGSGQGLPCSRNEIC
Sbjct: 61 MIREGSGQGLPCSRNEIC 78

BLAST of CSPI04G21300 vs. TrEMBL
Match: V7C004_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G051000g PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1

Query: 15 NKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER 60
          +K+  G KYN+E AE +ANEAQ LP+ EATP+YEQLL ++PTA +
Sbjct: 2  DKISGGDKYNIETAEILANEAQHLPVAEATPIYEQLLLLFPTAAK 46

BLAST of CSPI04G21300 vs. TrEMBL
Match: I3T6D8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1

Query: 10 DKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER 60
          DKT+S     G KYNVE AE +ANEAQ LPI E+TP YEQLL ++PTA +
Sbjct: 2  DKTSSIDKTTGGKYNVETAEILANEAQILPIAESTPTYEQLLQLFPTAAK 51

BLAST of CSPI04G21300 vs. TrEMBL
Match: A0A0S3T985_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G073100 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-06
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1

Query: 15 NKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER 60
          +K   G KYN+E AE +ANEAQ LP+ EATP+YEQLL ++PTA +
Sbjct: 2  DKTSGGDKYNIETAEILANEAQHLPVAEATPIYEQLLLLFPTAAK 46

BLAST of CSPI04G21300 vs. TrEMBL
Match: A0A0L9VMN1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g220700 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-06
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1

Query: 15 NKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER 60
          +K   G KYN+E AE +ANEAQ LP+ EATP+YEQLL ++PTA +
Sbjct: 2  DKTSGGDKYNIETAEILANEAQHLPVAEATPIYEQLLLLFPTAAK 46

BLAST of CSPI04G21300 vs. TAIR10
Match: AT1G17760.1 (AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.8e-06
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1

Query: 22 KYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER 60
          KY VE AE++A  A   PI +ATP+YEQLL++YPT+ R
Sbjct: 4  KYIVEEAEALAKRALHSPIAQATPIYEQLLSLYPTSAR 41

BLAST of CSPI04G21300 vs. NCBI nr
Match: gi|700199749|gb|KGN54907.1| (hypothetical protein Csa_4G593920 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1

Query: 1  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAERE 60
          MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAERE
Sbjct: 1  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAERE 60

Query: 61 MIREGSGQGLPCSRNEIC 79
          MIREGSGQGLPCSRNEIC
Sbjct: 61 MIREGSGQGLPCSRNEIC 78

BLAST of CSPI04G21300 vs. NCBI nr
Match: gi|778695235|ref|XP_011653954.1| (PREDICTED: cleavage stimulation factor subunit 77 isoform X2 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 7.7e-22
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1

Query: 1  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER 60
          MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTA +
Sbjct: 1  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAAK 59

BLAST of CSPI04G21300 vs. NCBI nr
Match: gi|778695232|ref|XP_011653953.1| (PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 7.7e-22
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1

Query: 1  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER 60
          MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTA +
Sbjct: 1  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAAK 59

BLAST of CSPI04G21300 vs. NCBI nr
Match: gi|659082815|ref|XP_008442046.1| (PREDICTED: cleavage stimulation factor subunit 3 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 3.8e-21
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 1

Query: 1  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER 60
          MASEGSDSKDKTTSNKLLDGLKYNVEVAESVA EAQRLPILEATPLYEQLLTVYPTA +
Sbjct: 1  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVATEAQRLPILEATPLYEQLLTVYPTAAK 59

BLAST of CSPI04G21300 vs. NCBI nr
Match: gi|1009163056|ref|XP_015899759.1| (PREDICTED: cleavage stimulation factor subunit 77 [Ziziphus jujuba])

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-07
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1

Query: 4  EGSDSKDKTT-SNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER 60
          +G++ + KT+ SNK +D  KYNVE AE+ ANEA RLPI EA P+YEQLLTV+PTA +
Sbjct: 3  DGTEPESKTSASNKDMDD-KYNVEAAEARANEALRLPITEAAPIYEQLLTVFPTAAK 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2S4_CUCSA1.5e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G593920 PE=4 SV=1[more]
V7C004_PHAVU1.1e-0660.00Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G051000g PE=4 SV=1[more]
I3T6D8_LOTJA1.4e-0662.00Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A0S3T985_PHAAN2.4e-0660.00Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G073100 PE=... [more]
A0A0L9VMN1_PHAAN2.4e-0660.00Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g220700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G17760.14.8e-0657.89 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|700199749|gb|KGN54907.1|2.1e-35100.00hypothetical protein Csa_4G593920 [Cucumis sativus][more]
gi|778695235|ref|XP_011653954.1|7.7e-2296.61PREDICTED: cleavage stimulation factor subunit 77 isoform X2 [Cucumis sativus][more]
gi|778695232|ref|XP_011653953.1|7.7e-2296.61PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis sativus][more]
gi|659082815|ref|XP_008442046.1|3.8e-2194.92PREDICTED: cleavage stimulation factor subunit 3 [Cucumis melo][more]
gi|1009163056|ref|XP_015899759.1|1.9e-0761.40PREDICTED: cleavage stimulation factor subunit 77 [Ziziphus jujuba][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009630 gravitropism
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0006397 mRNA processing
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0031123 RNA 3'-end processing
biological_process GO:0010629 negative regulation of gene expression
biological_process GO:0042868 antisense RNA metabolic process
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0060968 regulation of gene silencing
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G21300.1CSPI04G21300.1mRNA