CSPI04G20250.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G20250.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 18346183 .. 18346664 (-)
Sequence length	342

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCTGGTTTATGGGATAAAGCTATCACTAGTCCATTATGCAATGGCAGCAACCCAATGGATGGTTCGATCAAGTCAATGCTTTGTCAATTAACAATTAACAATCTCTCCAGCAGGTTTGTGCACGATCAGGGAAGCTCTAGCAAGACTTTTTATGGGTAGAAAGGAGGTGGCAATTGCATTTGTTGGGCAATTTCTAGCTGACATTGATTATTCAATTAAATCTAAGCAAGAGGCCACTCCAGTAATTTTGCACTTCATCATGAGAGCAACGTGAAACAAAACTCAGCAGCCTCCTTACTAAAGCTCCTGACTTTGTATTAAAGATAATTTTCATTAAAGCGATGAAGATGAAGACCGGAGTGAAATTAAGAATGTTTGAGCTCATGAGACTGAGTGCTGTAATGGAAATCAACCAATTGGCAGAAGATCGGAGCGTAACAACAAAGACTGAATATTCTTCCAAGAGTACAGGCTGA

mRNA sequence

ATGGAGGCTGGTTTATGGGATAAAGCTATCACTAGTCCATTATGCAATGGCAGCAACCCAATGGATGGTTCGATCAAGGAAGCTCTAGCAAGACTTTTTATGGGTAGAAAGGAGGTGGCAATTGCATTTGTTGGGCAATTTCTAGCTGACATTGATTATTCAATTAAATCTAAGCAAGAGGCCACTCCAATAATTTTCATTAAAGCGATGAAGATGAAGACCGGAGTGAAATTAAGAATGTTTGAGCTCATGAGACTGAGTGCTGTAATGGAAATCAACCAATTGGCAGAAGATCGGAGCGTAACAACAAAGACTGAATATTCTTCCAAGAGTACAGGCTGA

Coding sequence (CDS)

ATGGAGGCTGGTTTATGGGATAAAGCTATCACTAGTCCATTATGCAATGGCAGCAACCCAATGGATGGTTCGATCAAGGAAGCTCTAGCAAGACTTTTTATGGGTAGAAAGGAGGTGGCAATTGCATTTGTTGGGCAATTTCTAGCTGACATTGATTATTCAATTAAATCTAAGCAAGAGGCCACTCCAATAATTTTCATTAAAGCGATGAAGATGAAGACCGGAGTGAAATTAAGAATGTTTGAGCTCATGAGACTGAGTGCTGTAATGGAAATCAACCAATTGGCAGAAGATCGGAGCGTAACAACAAAGACTGAATATTCTTCCAAGAGTACAGGCTGA

Homology

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BLAST of CSPI04G20250.1 vs. TrEMBL
Match: A0A0A0L2H6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507420 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.6e-51
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 1


Query: 1   MEAGLWDKAITSPLCNGSNPMDGSIKEALARLFMGRKEVAIAFVGQFLADIDYSIKSKQE 60
           MEAGLWDKAITSPLCNGSNPMDG IKEALARLFMGRKEVAIAFVGQFLADIDYSIKSKQE
Sbjct: 1   MEAGLWDKAITSPLCNGSNPMDGLIKEALARLFMGRKEVAIAFVGQFLADIDYSIKSKQE 60

Query: 61  ATPIIFIKAMKMKTGVKLRMFELMRLSAVMEINQLAEDRSVTTKTEYSSKSTG 114
           ATPIIFIKAMKMKTGVKLRMFELMRLSAVMEINQLAEDRSV TKTEYSSKSTG
Sbjct: 61  ATPIIFIKAMKMKTGVKLRMFELMRLSAVMEINQLAEDRSV-TKTEYSSKSTG 112

[Close]

BLAST of CSPI04G20250.1 vs. NCBI nr
Match: gi|700199654|gb|KGN54812.1| (hypothetical protein Csa_4G507420 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 2.3e-51
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 1


Query: 1   MEAGLWDKAITSPLCNGSNPMDGSIKEALARLFMGRKEVAIAFVGQFLADIDYSIKSKQE 60
           MEAGLWDKAITSPLCNGSNPMDG IKEALARLFMGRKEVAIAFVGQFLADIDYSIKSKQE
Sbjct: 1   MEAGLWDKAITSPLCNGSNPMDGLIKEALARLFMGRKEVAIAFVGQFLADIDYSIKSKQE 60

Query: 61  ATPIIFIKAMKMKTGVKLRMFELMRLSAVMEINQLAEDRSVTTKTEYSSKSTG 114
           ATPIIFIKAMKMKTGVKLRMFELMRLSAVMEINQLAEDRSV TKTEYSSKSTG
Sbjct: 61  ATPIIFIKAMKMKTGVKLRMFELMRLSAVMEINQLAEDRSV-TKTEYSSKSTG 112

The following BLAST results are available for this feature:

BLAST of CSPI04G20250.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G20250.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2H6_CUCSA	1.6e-51	98.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507420 PE=4 SV=1	[more]

BLAST of CSPI04G20250.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G20250.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199654\|gb\|KGN54812.1\|	2.3e-51	98.23	hypothetical protein Csa_4G507420 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G20250	CSPI04G20250	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G20250.1	CSPI04G20250.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G20250.1.cds3	CSPI04G20250.1.cds3	CDS
CSPI04G20250.1.cds2	CSPI04G20250.1.cds2	CDS
CSPI04G20250.1.cds1	CSPI04G20250.1.cds1	CDS