CSPI04G15160.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G15160.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 12616295 .. 12616722 (-)
Sequence length	324

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGATTACTCATATCTCAAGTGGAAACTGTTTTCGAAATTGAGGGTGACGATGAGAGACAACAGATTGGGCCTGTATTGCAGGTACATATTGCAATCGATATAACTAAACCTCTTTGTCAAGGTGTTTGCATTCAGGTTGGTAGCCTTAACGAGGTTTTGATAGCGTATGAAATATCGCTATTCATTTTCGCTTAATTCGATTTCCATACGTGATTTTATGATATTACTTGATTTGTGTAATAGATTTTGAGCAATTCGTGGTACAATTTGAGATTGATGTCATTTTGGAACTAATTTGGGCCATTACAGAGTCATACGACTCAACCAAGACAAACCAGAGTAAACTGAAGCGTTGGGAAGTGCAAAAGGCTTTTTGCCTTGTAGCTTTGGGACGCCTCACGGAGCCTCGCGTGGCGTTGTAA

mRNA sequence

ATGGCGAGATTACTCATATCTCAAGTGGAAACTGTTTTCGAAATTGAGGGTGACGATGAGAGACAACAGATTGGGCCTGTATTGCAGGTACATATTGCAATCGATATAACTAAACCTCTTTGTCAAGGTGTTTGCATTCAGGTTGATTTTGAGCAATTCGTGGTACAATTTGAGATTGATGTCATTTTGGAACTAATTTGGGCCATTACAGAGTCATACGACTCAACCAAGACAAACCAGAGTAAACTGAAGCGTTGGGAAGTGCAAAAGGCTTTTTGCCTTGTAGCTTTGGGACGCCTCACGGAGCCTCGCGTGGCGTTGTAA

Coding sequence (CDS)

ATGGCGAGATTACTCATATCTCAAGTGGAAACTGTTTTCGAAATTGAGGGTGACGATGAGAGACAACAGATTGGGCCTGTATTGCAGGTACATATTGCAATCGATATAACTAAACCTCTTTGTCAAGGTGTTTGCATTCAGGTTGATTTTGAGCAATTCGTGGTACAATTTGAGATTGATGTCATTTTGGAACTAATTTGGGCCATTACAGAGTCATACGACTCAACCAAGACAAACCAGAGTAAACTGAAGCGTTGGGAAGTGCAAAAGGCTTTTTGCCTTGTAGCTTTGGGACGCCTCACGGAGCCTCGCGTGGCGTTGTAA

Homology

[Close]

BLAST of CSPI04G15160.1 vs. TrEMBL
Match: A0A0A0L133_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G297520 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.1e-44
Identity = 97/107 (90.65%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MARLLISQVETVFEIEGDDERQQIGPVLQVHIAIDITKPLCQGVCIQVDFEQFVVQFEID 60
           MARLLISQVETVFEIEGDDERQ+IGPVLQVHIAIDITKPLCQGVCIQV         EID
Sbjct: 5   MARLLISQVETVFEIEGDDERQRIGPVLQVHIAIDITKPLCQGVCIQVGSLN-----EID 64

Query: 61  VILELIWAITESYDSTKTNQSKLKRWEVQKAFCLVALGRLTEPRVAL 108
           VILELIWAITESYDSTKTNQSKLKRWEVQKAFCLVALGRLTEPRVAL
Sbjct: 65  VILELIWAITESYDSTKTNQSKLKRWEVQKAFCLVALGRLTEPRVAL 106

[Close]

BLAST of CSPI04G15160.1 vs. NCBI nr
Match: gi|700199144|gb|KGN54302.1| (hypothetical protein Csa_4G297520 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 4.4e-44
Identity = 97/107 (90.65%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MARLLISQVETVFEIEGDDERQQIGPVLQVHIAIDITKPLCQGVCIQVDFEQFVVQFEID 60
           MARLLISQVETVFEIEGDDERQ+IGPVLQVHIAIDITKPLCQGVCIQV         EID
Sbjct: 5   MARLLISQVETVFEIEGDDERQRIGPVLQVHIAIDITKPLCQGVCIQVGSLN-----EID 64

Query: 61  VILELIWAITESYDSTKTNQSKLKRWEVQKAFCLVALGRLTEPRVAL 108
           VILELIWAITESYDSTKTNQSKLKRWEVQKAFCLVALGRLTEPRVAL
Sbjct: 65  VILELIWAITESYDSTKTNQSKLKRWEVQKAFCLVALGRLTEPRVAL 106

The following BLAST results are available for this feature:

BLAST of CSPI04G15160.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G15160.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L133_CUCSA	3.1e-44	90.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G297520 PE=4 SV=1	[more]

BLAST of CSPI04G15160.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G15160.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199144\|gb\|KGN54302.1\|	4.4e-44	90.65	hypothetical protein Csa_4G297520 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G15160	CSPI04G15160	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G15160.1	CSPI04G15160.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G15160.1.cds2	CSPI04G15160.1.cds2	CDS
CSPI04G15160.1.cds1	CSPI04G15160.1.cds1	CDS