CSPI04G13700.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G13700.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr4 : 11657093 .. 11657680 (+)
Sequence length	588

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCCCTACAGTGGATCATTGGGCTGCAGTAGAGCAGATTTTGTGTTATCTAAAAGTTGCTCCTCGACGTGGGATCCTATACAGAGATCATGGACATACGAGAATTGAATGTTTTTCTAATGCTGATTGGACGGGGTCTCGTGAGGATAGGAGATCAACTTCTGGATATTGTGTTTTTGTAGGTGGAAACTTAGTTTCATGGAAGAGTAAGAAACAAAATGTTGTTTCTCGTTCGAGTGCTGAGTCAGAATATAGAGCTATGGCACAATCTGTGTGTGAAATAGTATGGATTCACCAACTATTATCTGAGATAGGCTTCAGTATTACCGTGCCAGCTAAATTATGGTGTGATAATCAAGTTGCACTTCATATTGCATCTAATCCAGTATTTCATGAACGAACTAAACATATTGAGGTGGATTGTCACTTCATTCGTGAGAAAATCCAAGATGGGTTGGTGTCCACAGGATATGTGAAGACCGGAGAACAATTGGGAGATATTCTAACTAAAGCTTTAAATGGAACAAGGATAAGCTATCTGTGCAACAAGCTGGGCATGATCGACATATTTGCTCCAGCTTGA

mRNA sequence

ATGTCTTCCCCTACAGTGGATCATTGGGCTGCAGTAGAGCAGATTTTGTGTTATCTAAAAGTTGCTCCTCGACGTGGGATCCTATACAGAGATCATGGACATACGAGAATTGAATGTTTTTCTAATGCTGATTGGACGGGGTCTCGTGAGGATAGGAGATCAACTTCTGGATATTGTGTTTTTGTAGGTGGAAACTTAGTTTCATGGAAGAGTAAGAAACAAAATGTTGTTTCTCGTTCGAGTGCTGAGTCAGAATATAGAGCTATGGCACAATCTGTGTGTGAAATAGTATGGATTCACCAACTATTATCTGAGATAGGCTTCAGTATTACCGTGCCAGCTAAATTATGGTGTGATAATCAAGTTGCACTTCATATTGCATCTAATCCAGTATTTCATGAACGAACTAAACATATTGAGGTGGATTGTCACTTCATTCGTGAGAAAATCCAAGATGGGTTGGTGTCCACAGGATATGTGAAGACCGGAGAACAATTGGGAGATATTCTAACTAAAGCTTTAAATGGAACAAGGATAAGCTATCTGTGCAACAAGCTGGGCATGATCGACATATTTGCTCCAGCTTGA

Coding sequence (CDS)

ATGTCTTCCCCTACAGTGGATCATTGGGCTGCAGTAGAGCAGATTTTGTGTTATCTAAAAGTTGCTCCTCGACGTGGGATCCTATACAGAGATCATGGACATACGAGAATTGAATGTTTTTCTAATGCTGATTGGACGGGGTCTCGTGAGGATAGGAGATCAACTTCTGGATATTGTGTTTTTGTAGGTGGAAACTTAGTTTCATGGAAGAGTAAGAAACAAAATGTTGTTTCTCGTTCGAGTGCTGAGTCAGAATATAGAGCTATGGCACAATCTGTGTGTGAAATAGTATGGATTCACCAACTATTATCTGAGATAGGCTTCAGTATTACCGTGCCAGCTAAATTATGGTGTGATAATCAAGTTGCACTTCATATTGCATCTAATCCAGTATTTCATGAACGAACTAAACATATTGAGGTGGATTGTCACTTCATTCGTGAGAAAATCCAAGATGGGTTGGTGTCCACAGGATATGTGAAGACCGGAGAACAATTGGGAGATATTCTAACTAAAGCTTTAAATGGAACAAGGATAAGCTATCTGTGCAACAAGCTGGGCATGATCGACATATTTGCTCCAGCTTGA

Homology

[Close]

BLAST of CSPI04G13700.1 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-31
Identity = 68/184 (36.96%), Postives = 111/184 (60.33%), Query Frame = 1


Query: 9    WAAVEQILCYLKVAPRRGILYRDH--GHTRIECFSNADWTGSREDRRSTSGYCV-FVGGN 68
            W  ++++L YLK      ++++ +     +I  + ++DW GS  DR+ST+GY       N
Sbjct: 1218 WQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFN 1277

Query: 69   LVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQVALH 128
            L+ W +K+QN V+ SS E+EY A+ ++V E +W+  LL+ I   +  P K++ DNQ  + 
Sbjct: 1278 LICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCIS 1337

Query: 129  IASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISYLCNK 188
            IA+NP  H+R KHI++  HF RE++Q+ ++   Y+ T  QL DI TK L   R   L +K
Sbjct: 1338 IANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDK 1397

Query: 189  LGMI 190
            LG++
Sbjct: 1398 LGLL 1401

[Close]

BLAST of CSPI04G13700.1 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-24
Identity = 59/186 (31.72%), Postives = 105/186 (56.45%), Query Frame = 1


Query: 1    MSSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCV 60
            + +P  +HW AV+ IL YL+      + +       ++ +++AD  G  ++R+S++GY  
Sbjct: 1140 LENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLF 1199

Query: 61   FVGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDN 120
               G  +SW+SK Q  V+ S+ E+EY A  ++  E++W+ + L E+G        ++CD+
Sbjct: 1200 TFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLH-QKEYVVYCDS 1259

Query: 121  QVALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRIS 180
            Q A+ ++ N ++H RTKHI+V  H+IRE + D  +    + T E   D+LTK +   +  
Sbjct: 1260 QSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1319

Query: 181  YLCNKL 187
             LC +L
Sbjct: 1320 -LCKEL 1322

[Close]

BLAST of CSPI04G13700.1 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.3e-17
Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = 1


Query: 1   MSSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCV 60
           M  PT+  +  ++++L Y+K     G+    +    ++ F ++DW G    RRST+G+C 
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  FVGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVW 99
           F+G N++SW +K+Q  VSRSS E+EYRA+A +  E+ W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CSPI04G13700.1 vs. TrEMBL
Match: Q850H7_VITVI (Gag-pol polyprotein (Fragment) OS=Vitis vinifera PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 1.6e-91
Identity = 155/194 (79.90%), Postives = 174/194 (89.69%), Query Frame = 1


Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILYR  GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 133 SAPTIKHWAALEQILCYLKKAPSLGILYRSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 192

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAMAQ+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 193 FGGNLVAWKSKKQSVVSRSSAESEYRAMAQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 252

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
            ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVST YVKTGEQLGDI TKALNGTR+ Y
Sbjct: 253 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTDYVKTGEQLGDIFTKALNGTRVEY 312

Query: 182 LCNKLGMIDIFAPA 196
            CNKLGMI+I+APA
Sbjct: 313 FCNKLGMINIYAPA 326

[Close]

BLAST of CSPI04G13700.1 vs. TrEMBL
Match: B0FBS2_9ROSI (Putative uncharacterized protein OS=Vitis hybrid cultivar PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.6e-91
Identity = 154/194 (79.38%), Postives = 174/194 (89.69%), Query Frame = 1


Query: 2    SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
            S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 1189 SAPTIKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 1248

Query: 62   VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
             GGNLV+WKSKKQ+VVSRSSAESEYRAM+Q+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 1249 FGGNLVAWKSKKQSVVSRSSAESEYRAMSQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 1308

Query: 122  VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
             ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI TKALNGTR+ Y
Sbjct: 1309 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNGTRVEY 1368

Query: 182  LCNKLGMIDIFAPA 196
             CNKLGMI+I+APA
Sbjct: 1369 FCNKLGMINIYAPA 1382

[Close]

BLAST of CSPI04G13700.1 vs. TrEMBL
Match: Q850I3_VITVI (Gag-pol polyprotein (Fragment) OS=Vitis vinifera PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.0e-90
Identity = 153/193 (79.27%), Postives = 173/193 (89.64%), Query Frame = 1


Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 133 SAPTIKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 192

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAM+Q+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 193 FGGNLVAWKSKKQSVVSRSSAESEYRAMSQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 252

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
            ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI TKALNGTR+ Y
Sbjct: 253 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNGTRVEY 312

Query: 182 LCNKLGMIDIFAP 195
            CNKLGMI+I+AP
Sbjct: 313 FCNKLGMINIYAP 325

[Close]

BLAST of CSPI04G13700.1 vs. TrEMBL
Match: A5BW61_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016691 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 5.2e-90
Identity = 153/194 (78.87%), Postives = 172/194 (88.66%), Query Frame = 1


Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 570 SAPTLKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 629

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAMAQ+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 630 FGGNLVAWKSKKQSVVSRSSAESEYRAMAQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 689

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
             LHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI  KALNGTR+ Y
Sbjct: 690 AXLHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFRKALNGTRVEY 749

Query: 182 LCNKLGMIDIFAPA 196
            CNKLGMI+I+APA
Sbjct: 750 FCNKLGMINIYAPA 763

[Close]

BLAST of CSPI04G13700.1 vs. TrEMBL
Match: Q850I4_VITVI (Gag-pol polyprotein (Fragment) OS=Vitis vinifera PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 3.3e-89
Identity = 151/193 (78.24%), Postives = 172/193 (89.12%), Query Frame = 1


Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 133 SAPTIKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 192

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAM+++ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 193 FGGNLVAWKSKKQSVVSRSSAESEYRAMSRATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 252

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
            ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI TKALNGTR+  
Sbjct: 253 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNGTRVEC 312

Query: 182 LCNKLGMIDIFAP 195
            CNKLGMI+I+AP
Sbjct: 313 FCNKLGMINIYAP 325

[Close]

BLAST of CSPI04G13700.1 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 165.6 bits (418), Expect = 3.0e-41
Identity = 82/194 (42.27%), Postives = 125/194 (64.43%), Query Frame = 1


Query: 3   SPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVFV 62
           +P + H  AV +IL Y+K    +G+ Y      +++ FS+A +   ++ RRST+GYC+F+
Sbjct: 408 APRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFL 467

Query: 63  GGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQV 122
           G +L+SWKSKKQ VVS+SSAE+EYRA++ +  E++W+ Q   E+   ++ P  L+CDN  
Sbjct: 468 GTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTA 527

Query: 123 ALHIASNPVFHERTKHIEVDCHFIREK-IQDGLVSTGYVKTGEQLG--DILTKALNGTRI 182
           A+HIA+N VFHERTKHIE DCH +RE+ +    +S  +    EQ G  + L+  L GT I
Sbjct: 528 AIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYSFQAYDEQDGFTEYLSPILRGT-I 587

Query: 183 SYLCNKLGMIDIFA 194
            Y+ +  G+  + A
Sbjct: 588 MYIVSMFGLAGLEA 600

[Close]

BLAST of CSPI04G13700.1 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 88.6 bits (218), Expect = 4.7e-18
Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = 1


Query: 1   MSSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCV 60
           M  PT+  +  ++++L Y+K     G+    +    ++ F ++DW G    RRST+G+C 
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  FVGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVW 99
           F+G N++SW +K+Q  VSRSS E+EYRA+A +  E+ W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CSPI04G13700.1 vs. NCBI nr
Match: gi|27901709|gb|AAO26690.1|AF478377_1 (gag-pol polyprotein [Vitis vinifera])

HSP 1 Score: 343.6 bits (880), Expect = 2.3e-91
Identity = 155/194 (79.90%), Postives = 174/194 (89.69%), Query Frame = 1


Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILYR  GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 133 SAPTIKHWAALEQILCYLKKAPSLGILYRSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 192

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAMAQ+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 193 FGGNLVAWKSKKQSVVSRSSAESEYRAMAQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 252

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
            ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVST YVKTGEQLGDI TKALNGTR+ Y
Sbjct: 253 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTDYVKTGEQLGDIFTKALNGTRVEY 312

Query: 182 LCNKLGMIDIFAPA 196
            CNKLGMI+I+APA
Sbjct: 313 FCNKLGMINIYAPA 326

[Close]

BLAST of CSPI04G13700.1 vs. NCBI nr
Match: gi|163955688|gb|ABY49842.1| (hypothetical protein [Vitis hybrid cultivar])

HSP 1 Score: 342.4 bits (877), Expect = 5.1e-91
Identity = 154/194 (79.38%), Postives = 174/194 (89.69%), Query Frame = 1


Query: 2    SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
            S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 1189 SAPTIKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 1248

Query: 62   VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
             GGNLV+WKSKKQ+VVSRSSAESEYRAM+Q+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 1249 FGGNLVAWKSKKQSVVSRSSAESEYRAMSQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 1308

Query: 122  VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
             ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI TKALNGTR+ Y
Sbjct: 1309 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNGTRVEY 1368

Query: 182  LCNKLGMIDIFAPA 196
             CNKLGMI+I+APA
Sbjct: 1369 FCNKLGMINIYAPA 1382

[Close]

BLAST of CSPI04G13700.1 vs. NCBI nr
Match: gi|27901696|gb|AAO26684.1|AF478370_1 (gag-pol polyprotein [Vitis vinifera])

HSP 1 Score: 340.9 bits (873), Expect = 1.5e-90
Identity = 153/193 (79.27%), Postives = 173/193 (89.64%), Query Frame = 1


Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 133 SAPTIKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 192

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAM+Q+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 193 FGGNLVAWKSKKQSVVSRSSAESEYRAMSQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 252

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
            ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI TKALNGTR+ Y
Sbjct: 253 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNGTRVEY 312

Query: 182 LCNKLGMIDIFAP 195
            CNKLGMI+I+AP
Sbjct: 313 FCNKLGMINIYAP 325

[Close]

BLAST of CSPI04G13700.1 vs. NCBI nr
Match: gi|147812669|emb|CAN61858.1| (hypothetical protein VITISV_016691 [Vitis vinifera])

HSP 1 Score: 338.6 bits (867), Expect = 7.4e-90
Identity = 153/194 (78.87%), Postives = 172/194 (88.66%), Query Frame = 1


Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 570 SAPTLKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 629

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAMAQ+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 630 FGGNLVAWKSKKQSVVSRSSAESEYRAMAQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 689

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
             LHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI  KALNGTR+ Y
Sbjct: 690 AXLHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFRKALNGTRVEY 749

Query: 182 LCNKLGMIDIFAPA 196
            CNKLGMI+I+APA
Sbjct: 750 FCNKLGMINIYAPA 763

[Close]

BLAST of CSPI04G13700.1 vs. NCBI nr
Match: gi|27901694|gb|AAO26683.1|AF478369_1 (gag-pol polyprotein [Vitis vinifera])

HSP 1 Score: 335.9 bits (860), Expect = 4.8e-89
Identity = 151/193 (78.24%), Postives = 172/193 (89.12%), Query Frame = 1


Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 133 SAPTIKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 192

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAM+++ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 193 FGGNLVAWKSKKQSVVSRSSAESEYRAMSRATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 252

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
            ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI TKALNGTR+  
Sbjct: 253 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNGTRVEC 312

Query: 182 LCNKLGMIDIFAP 195
            CNKLGMI+I+AP
Sbjct: 313 FCNKLGMINIYAP 325

The following BLAST results are available for this feature:

BLAST of CSPI04G13700.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COPIA_DROME	2.7e-31	36.96	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
POLX_TOBAC	1.1e-24	31.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
M810_ARATH	8.3e-17	37.76	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of CSPI04G13700.1 vs. TrEMBL


Match Name	E-value	Identity	Description
Q850H7_VITVI	1.6e-91	79.90	Gag-pol polyprotein (Fragment) OS=Vitis vinifera PE=4 SV=1	[more]
B0FBS2_9ROSI	3.6e-91	79.38	Putative uncharacterized protein OS=Vitis hybrid cultivar PE=4 SV=1	[more]
Q850I3_VITVI	1.0e-90	79.27	Gag-pol polyprotein (Fragment) OS=Vitis vinifera PE=4 SV=1	[more]
A5BW61_VITVI	5.2e-90	78.87	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016691 PE=4 SV=1	[more]
Q850I4_VITVI	3.3e-89	78.24	Gag-pol polyprotein (Fragment) OS=Vitis vinifera PE=4 SV=1	[more]

BLAST of CSPI04G13700.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	3.0e-41	42.27	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	4.7e-18	37.76	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CSPI04G13700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|27901709\|gb\|AAO26690.1\|AF478377_1	2.3e-91	79.90	gag-pol polyprotein [Vitis vinifera]	[more]
gi\|163955688\|gb\|ABY49842.1\|	5.1e-91	79.38	hypothetical protein [Vitis hybrid cultivar]	[more]
gi\|27901696\|gb\|AAO26684.1\|AF478370_1	1.5e-90	79.27	gag-pol polyprotein [Vitis vinifera]	[more]
gi\|147812669\|emb\|CAN61858.1\|	7.4e-90	78.87	hypothetical protein VITISV_016691 [Vitis vinifera]	[more]
gi\|27901694\|gb\|AAO26683.1\|AF478369_1	4.8e-89	78.24	gag-pol polyprotein [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G13700	CSPI04G13700	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G13700.1	CSPI04G13700.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G13700.1.cds1	CSPI04G13700.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..113 score: 3.5
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 1..113 score: 3.5
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 5..144 score: 8.