CSPI04G13700 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G13700
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr4 : 11657093 .. 11657680 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCCCCTACAGTGGATCATTGGGCTGCAGTAGAGCAGATTTTGTGTTATCTAAAAGTTGCTCCTCGACGTGGGATCCTATACAGAGATCATGGACATACGAGAATTGAATGTTTTTCTAATGCTGATTGGACGGGGTCTCGTGAGGATAGGAGATCAACTTCTGGATATTGTGTTTTTGTAGGTGGAAACTTAGTTTCATGGAAGAGTAAGAAACAAAATGTTGTTTCTCGTTCGAGTGCTGAGTCAGAATATAGAGCTATGGCACAATCTGTGTGTGAAATAGTATGGATTCACCAACTATTATCTGAGATAGGCTTCAGTATTACCGTGCCAGCTAAATTATGGTGTGATAATCAAGTTGCACTTCATATTGCATCTAATCCAGTATTTCATGAACGAACTAAACATATTGAGGTGGATTGTCACTTCATTCGTGAGAAAATCCAAGATGGGTTGGTGTCCACAGGATATGTGAAGACCGGAGAACAATTGGGAGATATTCTAACTAAAGCTTTAAATGGAACAAGGATAAGCTATCTGTGCAACAAGCTGGGCATGATCGACATATTTGCTCCAGCTTGA

mRNA sequence

ATGTCTTCCCCTACAGTGGATCATTGGGCTGCAGTAGAGCAGATTTTGTGTTATCTAAAAGTTGCTCCTCGACGTGGGATCCTATACAGAGATCATGGACATACGAGAATTGAATGTTTTTCTAATGCTGATTGGACGGGGTCTCGTGAGGATAGGAGATCAACTTCTGGATATTGTGTTTTTGTAGGTGGAAACTTAGTTTCATGGAAGAGTAAGAAACAAAATGTTGTTTCTCGTTCGAGTGCTGAGTCAGAATATAGAGCTATGGCACAATCTGTGTGTGAAATAGTATGGATTCACCAACTATTATCTGAGATAGGCTTCAGTATTACCGTGCCAGCTAAATTATGGTGTGATAATCAAGTTGCACTTCATATTGCATCTAATCCAGTATTTCATGAACGAACTAAACATATTGAGGTGGATTGTCACTTCATTCGTGAGAAAATCCAAGATGGGTTGGTGTCCACAGGATATGTGAAGACCGGAGAACAATTGGGAGATATTCTAACTAAAGCTTTAAATGGAACAAGGATAAGCTATCTGTGCAACAAGCTGGGCATGATCGACATATTTGCTCCAGCTTGA

Coding sequence (CDS)

ATGTCTTCCCCTACAGTGGATCATTGGGCTGCAGTAGAGCAGATTTTGTGTTATCTAAAAGTTGCTCCTCGACGTGGGATCCTATACAGAGATCATGGACATACGAGAATTGAATGTTTTTCTAATGCTGATTGGACGGGGTCTCGTGAGGATAGGAGATCAACTTCTGGATATTGTGTTTTTGTAGGTGGAAACTTAGTTTCATGGAAGAGTAAGAAACAAAATGTTGTTTCTCGTTCGAGTGCTGAGTCAGAATATAGAGCTATGGCACAATCTGTGTGTGAAATAGTATGGATTCACCAACTATTATCTGAGATAGGCTTCAGTATTACCGTGCCAGCTAAATTATGGTGTGATAATCAAGTTGCACTTCATATTGCATCTAATCCAGTATTTCATGAACGAACTAAACATATTGAGGTGGATTGTCACTTCATTCGTGAGAAAATCCAAGATGGGTTGGTGTCCACAGGATATGTGAAGACCGGAGAACAATTGGGAGATATTCTAACTAAAGCTTTAAATGGAACAAGGATAAGCTATCTGTGCAACAAGCTGGGCATGATCGACATATTTGCTCCAGCTTGA
Homology
[Close]
BLAST of CSPI04G13700 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-31
Identity = 68/184 (36.96%), Postives = 111/184 (60.33%), Query Frame = 1 

Query: 9    WAAVEQILCYLKVAPRRGILYRDH--GHTRIECFSNADWTGSREDRRSTSGYCV-FVGGN 68
            W  ++++L YLK      ++++ +     +I  + ++DW GS  DR+ST+GY       N
Sbjct: 1218 WQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFN 1277

Query: 69   LVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQVALH 128
            L+ W +K+QN V+ SS E+EY A+ ++V E +W+  LL+ I   +  P K++ DNQ  + 
Sbjct: 1278 LICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCIS 1337

Query: 129  IASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISYLCNK 188
            IA+NP  H+R KHI++  HF RE++Q+ ++   Y+ T  QL DI TK L   R   L +K
Sbjct: 1338 IANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDK 1397

Query: 189  LGMI 190
            LG++
Sbjct: 1398 LGLL 1401

[Close]
BLAST of CSPI04G13700 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-24
Identity = 59/186 (31.72%), Postives = 105/186 (56.45%), Query Frame = 1 

Query: 1    MSSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCV 60
            + +P  +HW AV+ IL YL+      + +       ++ +++AD  G  ++R+S++GY  
Sbjct: 1140 LENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLF 1199

Query: 61   FVGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDN 120
               G  +SW+SK Q  V+ S+ E+EY A  ++  E++W+ + L E+G        ++CD+
Sbjct: 1200 TFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLH-QKEYVVYCDS 1259

Query: 121  QVALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRIS 180
            Q A+ ++ N ++H RTKHI+V  H+IRE + D  +    + T E   D+LTK +   +  
Sbjct: 1260 QSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1319

Query: 181  YLCNKL 187
             LC +L
Sbjct: 1320 -LCKEL 1322

[Close]
BLAST of CSPI04G13700 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.3e-17
Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = 1 

Query: 1   MSSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCV 60
           M  PT+  +  ++++L Y+K     G+    +    ++ F ++DW G    RRST+G+C 
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  FVGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVW 99
           F+G N++SW +K+Q  VSRSS E+EYRA+A +  E+ W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]
BLAST of CSPI04G13700 vs. TrEMBL
Match: Q850H7_VITVI (Gag-pol polyprotein (Fragment) OS=Vitis vinifera PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 1.6e-91
Identity = 155/194 (79.90%), Postives = 174/194 (89.69%), Query Frame = 1 

Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILYR  GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 133 SAPTIKHWAALEQILCYLKKAPSLGILYRSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 192

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAMAQ+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 193 FGGNLVAWKSKKQSVVSRSSAESEYRAMAQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 252

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
            ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVST YVKTGEQLGDI TKALNGTR+ Y
Sbjct: 253 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTDYVKTGEQLGDIFTKALNGTRVEY 312

Query: 182 LCNKLGMIDIFAPA 196
            CNKLGMI+I+APA
Sbjct: 313 FCNKLGMINIYAPA 326

[Close]
BLAST of CSPI04G13700 vs. TrEMBL
Match: B0FBS2_9ROSI (Putative uncharacterized protein OS=Vitis hybrid cultivar PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.6e-91
Identity = 154/194 (79.38%), Postives = 174/194 (89.69%), Query Frame = 1 

Query: 2    SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
            S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 1189 SAPTIKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 1248

Query: 62   VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
             GGNLV+WKSKKQ+VVSRSSAESEYRAM+Q+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 1249 FGGNLVAWKSKKQSVVSRSSAESEYRAMSQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 1308

Query: 122  VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
             ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI TKALNGTR+ Y
Sbjct: 1309 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNGTRVEY 1368

Query: 182  LCNKLGMIDIFAPA 196
             CNKLGMI+I+APA
Sbjct: 1369 FCNKLGMINIYAPA 1382

[Close]
BLAST of CSPI04G13700 vs. TrEMBL
Match: Q850I3_VITVI (Gag-pol polyprotein (Fragment) OS=Vitis vinifera PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.0e-90
Identity = 153/193 (79.27%), Postives = 173/193 (89.64%), Query Frame = 1 

Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 133 SAPTIKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 192

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAM+Q+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 193 FGGNLVAWKSKKQSVVSRSSAESEYRAMSQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 252

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
            ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI TKALNGTR+ Y
Sbjct: 253 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNGTRVEY 312

Query: 182 LCNKLGMIDIFAP 195
            CNKLGMI+I+AP
Sbjct: 313 FCNKLGMINIYAP 325

[Close]
BLAST of CSPI04G13700 vs. TrEMBL
Match: A5BW61_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016691 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 5.2e-90
Identity = 153/194 (78.87%), Postives = 172/194 (88.66%), Query Frame = 1 

Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 570 SAPTLKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 629

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAMAQ+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 630 FGGNLVAWKSKKQSVVSRSSAESEYRAMAQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 689

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
             LHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI  KALNGTR+ Y
Sbjct: 690 AXLHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFRKALNGTRVEY 749

Query: 182 LCNKLGMIDIFAPA 196
            CNKLGMI+I+APA
Sbjct: 750 FCNKLGMINIYAPA 763

[Close]
BLAST of CSPI04G13700 vs. TrEMBL
Match: Q850I4_VITVI (Gag-pol polyprotein (Fragment) OS=Vitis vinifera PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 3.3e-89
Identity = 151/193 (78.24%), Postives = 172/193 (89.12%), Query Frame = 1 

Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 133 SAPTIKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 192

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAM+++ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 193 FGGNLVAWKSKKQSVVSRSSAESEYRAMSRATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 252

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
            ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI TKALNGTR+  
Sbjct: 253 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNGTRVEC 312

Query: 182 LCNKLGMIDIFAP 195
            CNKLGMI+I+AP
Sbjct: 313 FCNKLGMINIYAP 325

[Close]
BLAST of CSPI04G13700 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 165.6 bits (418), Expect = 3.0e-41
Identity = 82/194 (42.27%), Postives = 125/194 (64.43%), Query Frame = 1 

Query: 3   SPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVFV 62
           +P + H  AV +IL Y+K    +G+ Y      +++ FS+A +   ++ RRST+GYC+F+
Sbjct: 408 APRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFL 467

Query: 63  GGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQV 122
           G +L+SWKSKKQ VVS+SSAE+EYRA++ +  E++W+ Q   E+   ++ P  L+CDN  
Sbjct: 468 GTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTA 527

Query: 123 ALHIASNPVFHERTKHIEVDCHFIREK-IQDGLVSTGYVKTGEQLG--DILTKALNGTRI 182
           A+HIA+N VFHERTKHIE DCH +RE+ +    +S  +    EQ G  + L+  L GT I
Sbjct: 528 AIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYSFQAYDEQDGFTEYLSPILRGT-I 587

Query: 183 SYLCNKLGMIDIFA 194
            Y+ +  G+  + A
Sbjct: 588 MYIVSMFGLAGLEA 600

[Close]
BLAST of CSPI04G13700 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 88.6 bits (218), Expect = 4.7e-18
Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = 1 

Query: 1   MSSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCV 60
           M  PT+  +  ++++L Y+K     G+    +    ++ F ++DW G    RRST+G+C 
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  FVGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVW 99
           F+G N++SW +K+Q  VSRSS E+EYRA+A +  E+ W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]
BLAST of CSPI04G13700 vs. NCBI nr
Match: gi|27901709|gb|AAO26690.1|AF478377_1 (gag-pol polyprotein [Vitis vinifera])

HSP 1 Score: 343.6 bits (880), Expect = 2.3e-91
Identity = 155/194 (79.90%), Postives = 174/194 (89.69%), Query Frame = 1 

Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILYR  GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 133 SAPTIKHWAALEQILCYLKKAPSLGILYRSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 192

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAMAQ+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 193 FGGNLVAWKSKKQSVVSRSSAESEYRAMAQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 252

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
            ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVST YVKTGEQLGDI TKALNGTR+ Y
Sbjct: 253 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTDYVKTGEQLGDIFTKALNGTRVEY 312

Query: 182 LCNKLGMIDIFAPA 196
            CNKLGMI+I+APA
Sbjct: 313 FCNKLGMINIYAPA 326

[Close]
BLAST of CSPI04G13700 vs. NCBI nr
Match: gi|163955688|gb|ABY49842.1| (hypothetical protein [Vitis hybrid cultivar])

HSP 1 Score: 342.4 bits (877), Expect = 5.1e-91
Identity = 154/194 (79.38%), Postives = 174/194 (89.69%), Query Frame = 1 

Query: 2    SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
            S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 1189 SAPTIKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 1248

Query: 62   VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
             GGNLV+WKSKKQ+VVSRSSAESEYRAM+Q+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 1249 FGGNLVAWKSKKQSVVSRSSAESEYRAMSQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 1308

Query: 122  VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
             ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI TKALNGTR+ Y
Sbjct: 1309 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNGTRVEY 1368

Query: 182  LCNKLGMIDIFAPA 196
             CNKLGMI+I+APA
Sbjct: 1369 FCNKLGMINIYAPA 1382

[Close]
BLAST of CSPI04G13700 vs. NCBI nr
Match: gi|27901696|gb|AAO26684.1|AF478370_1 (gag-pol polyprotein [Vitis vinifera])

HSP 1 Score: 340.9 bits (873), Expect = 1.5e-90
Identity = 153/193 (79.27%), Postives = 173/193 (89.64%), Query Frame = 1 

Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 133 SAPTIKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 192

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAM+Q+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 193 FGGNLVAWKSKKQSVVSRSSAESEYRAMSQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 252

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
            ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI TKALNGTR+ Y
Sbjct: 253 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNGTRVEY 312

Query: 182 LCNKLGMIDIFAP 195
            CNKLGMI+I+AP
Sbjct: 313 FCNKLGMINIYAP 325

[Close]
BLAST of CSPI04G13700 vs. NCBI nr
Match: gi|147812669|emb|CAN61858.1| (hypothetical protein VITISV_016691 [Vitis vinifera])

HSP 1 Score: 338.6 bits (867), Expect = 7.4e-90
Identity = 153/194 (78.87%), Postives = 172/194 (88.66%), Query Frame = 1 

Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 570 SAPTLKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 629

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAMAQ+ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 630 FGGNLVAWKSKKQSVVSRSSAESEYRAMAQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 689

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
             LHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI  KALNGTR+ Y
Sbjct: 690 AXLHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFRKALNGTRVEY 749

Query: 182 LCNKLGMIDIFAPA 196
            CNKLGMI+I+APA
Sbjct: 750 FCNKLGMINIYAPA 763

[Close]
BLAST of CSPI04G13700 vs. NCBI nr
Match: gi|27901694|gb|AAO26683.1|AF478369_1 (gag-pol polyprotein [Vitis vinifera])

HSP 1 Score: 335.9 bits (860), Expect = 4.8e-89
Identity = 151/193 (78.24%), Postives = 172/193 (89.12%), Query Frame = 1 

Query: 2   SSPTVDHWAAVEQILCYLKVAPRRGILYRDHGHTRIECFSNADWTGSREDRRSTSGYCVF 61
           S+PT+ HWAA+EQILCYLK AP  GILY   GHTRIECFS+ADW GS+ DRRST+GYCVF
Sbjct: 133 SAPTIKHWAALEQILCYLKKAPGLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVF 192

Query: 62  VGGNLVSWKSKKQNVVSRSSAESEYRAMAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQ 121
            GGNLV+WKSKKQ+VVSRSSAESEYRAM+++ CEI+WIHQLL E+G   T+PAKLWCDNQ
Sbjct: 193 FGGNLVAWKSKKQSVVSRSSAESEYRAMSRATCEIIWIHQLLCEVGMKCTMPAKLWCDNQ 252

Query: 122 VALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQLGDILTKALNGTRISY 181
            ALHIA+NPV+HERTKHIEVDCHFIREKI++ LVSTGYVKTGEQLGDI TKALNGTR+  
Sbjct: 253 AALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNGTRVEC 312

Query: 182 LCNKLGMIDIFAP 195
            CNKLGMI+I+AP
Sbjct: 313 FCNKLGMINIYAP 325

The following BLAST results are available for this feature:
BLAST of CSPI04G13700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
COPIA_DROME2.7e-3136.96Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
POLX_TOBAC1.1e-2431.72Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
M810_ARATH8.3e-1737.76Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0... [more]
BLAST of CSPI04G13700 vs. TrEMBL
Match NameE-valueIdentityDescription
Q850H7_VITVI1.6e-9179.90Gag-pol polyprotein (Fragment) OS=Vitis vinifera PE=4 SV=1[more]
B0FBS2_9ROSI3.6e-9179.38Putative uncharacterized protein OS=Vitis hybrid cultivar PE=4 SV=1[more]
Q850I3_VITVI1.0e-9079.27Gag-pol polyprotein (Fragment) OS=Vitis vinifera PE=4 SV=1[more]
A5BW61_VITVI5.2e-9078.87Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016691 PE=4 SV=1[more]
Q850I4_VITVI3.3e-8978.24Gag-pol polyprotein (Fragment) OS=Vitis vinifera PE=4 SV=1[more]
BLAST of CSPI04G13700 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.13.0e-4142.27 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00810.14.7e-1837.76ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
BLAST of CSPI04G13700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|27901709|gb|AAO26690.1|AF478377_12.3e-9179.90gag-pol polyprotein [Vitis vinifera][more]
gi|163955688|gb|ABY49842.1|5.1e-9179.38hypothetical protein [Vitis hybrid cultivar][more]
gi|27901696|gb|AAO26684.1|AF478370_11.5e-9079.27gag-pol polyprotein [Vitis vinifera][more]
gi|147812669|emb|CAN61858.1|7.4e-9078.87hypothetical protein VITISV_016691 [Vitis vinifera][more]
gi|27901694|gb|AAO26683.1|AF478369_14.8e-8978.24gag-pol polyprotein [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G13700.1CSPI04G13700.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..113
score: 3.5
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 1..113
score: 3.5
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 5..144
score: 8.