CSPI04G10870.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI04G10870.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 9175127 .. 9175564 (-)
Sequence length273
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTGGGTTAATTGGAGATTGTTATGGGGAGGAGGCTTTACCCTAATTCTTCTTGTAAGCTTTCATTTTCTCGCCGGCCAAACAGCGGTGGAAAAGGTTGAAATGAAGGAATTCCAACGGTTTCATTTTGGAATGTATCCAAAAAATATTCCTATTCCTCCCTCTGCACCCAGCAACAGAAATTCGGACCATTCTCCTTCTCCTCCGCCGCCCCCGCTGCCATCGGCCCGTTTGTTCCGATGATCAGCAACACTCCCAAACTGCTTGCTTTGGAGGAGCAGTACTCCGATTGTTGGCTTTGCTAGTGAGAGTATTGAGGGTTTTCAATCTATTTTGTTTCCATATTTTGCATTTCAAGTGTTTGATTTCTTTTTGTTAGTGTTGCCTTTCGAGGTTGGTGACATGCATGCTCTCATGTTTGTTCAACTTAGGTAG

mRNA sequence

ATGGAGTGGGTTAATTGGAGATTGTTATGGGGAGGAGGCTTTACCCTAATTCTTCTTGTAAGCTTTCATTTTCTCGCCGGCCAAACAGCGGTGGAAAAGCAACAGAAATTCGGACCATTCTCCTTCTCCTCCGCCGCCCCCGCTGCCATCGGCCCGTTTGTTCCGATGATCAGCAACACTCCCAAACTGCTTGCTTTGGAGGAGCAGTACTCCGATTTGTTGCCTTTCGAGGTTGGTGACATGCATGCTCTCATGTTTGTTCAACTTAGGTAG

Coding sequence (CDS)

ATGGAGTGGGTTAATTGGAGATTGTTATGGGGAGGAGGCTTTACCCTAATTCTTCTTGTAAGCTTTCATTTTCTCGCCGGCCAAACAGCGGTGGAAAAGCAACAGAAATTCGGACCATTCTCCTTCTCCTCCGCCGCCCCCGCTGCCATCGGCCCGTTTGTTCCGATGATCAGCAACACTCCCAAACTGCTTGCTTTGGAGGAGCAGTACTCCGATTTGTTGCCTTTCGAGGTTGGTGACATGCATGCTCTCATGTTTGTTCAACTTAGGTAG
Homology
[Close]
BLAST of CSPI04G10870.1 vs. TrEMBL
Match: A0A0A0KW99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G187300 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.5e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT 60
          MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT
Sbjct: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT 60

Query: 61 PKLLALEEQYSDLLPFEVGDMHALMFVQLR 91
          PKLLALEEQYSDLLPFEVGDMHALMFVQLR
Sbjct: 61 PKLLALEEQYSDLLPFEVGDMHALMFVQLR 90

[Close]
BLAST of CSPI04G10870.1 vs. NCBI nr
Match: gi|700198742|gb|KGN53900.1| (hypothetical protein Csa_4G187300 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 2.2e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT 60
          MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT
Sbjct: 1  MEWVNWRLLWGGGFTLILLVSFHFLAGQTAVEKQQKFGPFSFSSAAPAAIGPFVPMISNT 60

Query: 61 PKLLALEEQYSDLLPFEVGDMHALMFVQLR 91
          PKLLALEEQYSDLLPFEVGDMHALMFVQLR
Sbjct: 61 PKLLALEEQYSDLLPFEVGDMHALMFVQLR 90

The following BLAST results are available for this feature:
BLAST of CSPI04G10870.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G10870.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW99_CUCSA1.5e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G187300 PE=4 SV=1[more]
BLAST of CSPI04G10870.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G10870.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198742|gb|KGN53900.1|2.2e-44100.00hypothetical protein Csa_4G187300 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI04G10870CSPI04G10870gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI04G10870.1CSPI04G10870.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G10870.1.cds3CSPI04G10870.1.cds3CDS
CSPI04G10870.1.cds2CSPI04G10870.1.cds2CDS
CSPI04G10870.1.cds1CSPI04G10870.1.cds1CDS