CSPI04G05530.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI04G05530.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 3748481 .. 3748684 (+)
Sequence length204
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCTAAGAACCTCGAAGAAGAAACCAACCTGTTCAAAGATCAGGCAGATCGAGAACAGAAAACAGCTGAAACCCAGAACTTCCTGTCCACAATGCGTTCTTAAAAGAGATGGAGGAGGTGGTTGGGAAGAAGAAATCCCTCCAGATCAGAAGAAGAACATGGATCGAGACGGAGAAACAGGGGGAGACATGAAATCTTAA

mRNA sequence

ATGCCGCTAAGAACCTCGAAGAAGAAACCAACCTGTTCAAAGATCAGGCAGATCGAGAACAGAAAACAGCTGAAACCCAGAACTTCCTGTCCACAATGCGTTCTTAAAAGAGATGGAGGAGGTGGTTGGGAAGAAGAAATCCCTCCAGATCAGAAGAAGAACATGGATCGAGACGGAGAAACAGGGGGAGACATGAAATCTTAA

Coding sequence (CDS)

ATGCCGCTAAGAACCTCGAAGAAGAAACCAACCTGTTCAAAGATCAGGCAGATCGAGAACAGAAAACAGCTGAAACCCAGAACTTCCTGTCCACAATGCGTTCTTAAAAGAGATGGAGGAGGTGGTTGGGAAGAAGAAATCCCTCCAGATCAGAAGAAGAACATGGATCGAGACGGAGAAACAGGGGGAGACATGAAATCTTAA
Homology
[Close]
BLAST of CSPI04G05530.1 vs. TrEMBL
Match: A0A0A0KY25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046750 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-30
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MPLRTSKKKPTCSKIRQIENRKQLKPRTSCPQCVLKRDGGGGWEEEIPPDQKKNMDRDGE 60
          MPL+TSKKKPTCSKIRQIENRKQLKPRTSCPQCVLKRDGGGGWEEEIPPDQKKNMDRDGE
Sbjct: 1  MPLKTSKKKPTCSKIRQIENRKQLKPRTSCPQCVLKRDGGGGWEEEIPPDQKKNMDRDGE 60

Query: 61 TGGDMKS 68
          TGGDMKS
Sbjct: 61 TGGDMKS 67

[Close]
BLAST of CSPI04G05530.1 vs. NCBI nr
Match: gi|700198154|gb|KGN53312.1| (hypothetical protein Csa_4G046750 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-30
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MPLRTSKKKPTCSKIRQIENRKQLKPRTSCPQCVLKRDGGGGWEEEIPPDQKKNMDRDGE 60
          MPL+TSKKKPTCSKIRQIENRKQLKPRTSCPQCVLKRDGGGGWEEEIPPDQKKNMDRDGE
Sbjct: 1  MPLKTSKKKPTCSKIRQIENRKQLKPRTSCPQCVLKRDGGGGWEEEIPPDQKKNMDRDGE 60

Query: 61 TGGDMKS 68
          TGGDMKS
Sbjct: 61 TGGDMKS 67

The following BLAST results are available for this feature:
BLAST of CSPI04G05530.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G05530.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY25_CUCSA1.2e-3098.51Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046750 PE=4 SV=1[more]
BLAST of CSPI04G05530.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G05530.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198154|gb|KGN53312.1|1.7e-3098.51hypothetical protein Csa_4G046750 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI04G05530CSPI04G05530gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI04G05530.1CSPI04G05530.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G05530.1.cds1CSPI04G05530.1.cds1CDS