CSPI04G05530 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G05530
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 3748481 .. 3748684 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCTAAGAACCTCGAAGAAGAAACCAACCTGTTCAAAGATCAGGCAGATCGAGAACAGAAAACAGCTGAAACCCAGAACTTCCTGTCCACAATGCGTTCTTAAAAGAGATGGAGGAGGTGGTTGGGAAGAAGAAATCCCTCCAGATCAGAAGAAGAACATGGATCGAGACGGAGAAACAGGGGGAGACATGAAATCTTAA

mRNA sequence

ATGCCGCTAAGAACCTCGAAGAAGAAACCAACCTGTTCAAAGATCAGGCAGATCGAGAACAGAAAACAGCTGAAACCCAGAACTTCCTGTCCACAATGCGTTCTTAAAAGAGATGGAGGAGGTGGTTGGGAAGAAGAAATCCCTCCAGATCAGAAGAAGAACATGGATCGAGACGGAGAAACAGGGGGAGACATGAAATCTTAA

Coding sequence (CDS)

ATGCCGCTAAGAACCTCGAAGAAGAAACCAACCTGTTCAAAGATCAGGCAGATCGAGAACAGAAAACAGCTGAAACCCAGAACTTCCTGTCCACAATGCGTTCTTAAAAGAGATGGAGGAGGTGGTTGGGAAGAAGAAATCCCTCCAGATCAGAAGAAGAACATGGATCGAGACGGAGAAACAGGGGGAGACATGAAATCTTAA
Homology
[Close]
BLAST of CSPI04G05530 vs. TrEMBL
Match: A0A0A0KY25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046750 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-30
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MPLRTSKKKPTCSKIRQIENRKQLKPRTSCPQCVLKRDGGGGWEEEIPPDQKKNMDRDGE 60
          MPL+TSKKKPTCSKIRQIENRKQLKPRTSCPQCVLKRDGGGGWEEEIPPDQKKNMDRDGE
Sbjct: 1  MPLKTSKKKPTCSKIRQIENRKQLKPRTSCPQCVLKRDGGGGWEEEIPPDQKKNMDRDGE 60

Query: 61 TGGDMKS 68
          TGGDMKS
Sbjct: 61 TGGDMKS 67

[Close]
BLAST of CSPI04G05530 vs. NCBI nr
Match: gi|700198154|gb|KGN53312.1| (hypothetical protein Csa_4G046750 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-30
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MPLRTSKKKPTCSKIRQIENRKQLKPRTSCPQCVLKRDGGGGWEEEIPPDQKKNMDRDGE 60
          MPL+TSKKKPTCSKIRQIENRKQLKPRTSCPQCVLKRDGGGGWEEEIPPDQKKNMDRDGE
Sbjct: 1  MPLKTSKKKPTCSKIRQIENRKQLKPRTSCPQCVLKRDGGGGWEEEIPPDQKKNMDRDGE 60

Query: 61 TGGDMKS 68
          TGGDMKS
Sbjct: 61 TGGDMKS 67

The following BLAST results are available for this feature:
BLAST of CSPI04G05530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G05530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY25_CUCSA1.2e-3098.51Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046750 PE=4 SV=1[more]
BLAST of CSPI04G05530 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G05530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198154|gb|KGN53312.1|1.7e-3098.51hypothetical protein Csa_4G046750 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G05530.1CSPI04G05530.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G05530Csa4G046750Cucumber (Chinese Long) v2cpicuB182
CSPI04G05530CsaV3_4G005680Cucumber (Chinese Long) v3cpicucB213
CSPI04G05530Bhi01G001837Wax gourdcpiwgoB369
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G05530Cucumber (Chinese Long) v3cpicucB211
CSPI04G05530Cucumber (Chinese Long) v3cpicucB242
CSPI04G05530Watermelon (97103) v2cpiwmbB275
CSPI04G05530Watermelon (97103) v2cpiwmbB318
CSPI04G05530Watermelon (97103) v2cpiwmbB332
CSPI04G05530Wax gourdcpiwgoB378
CSPI04G05530Wax gourdcpiwgoB428
CSPI04G05530Wild cucumber (PI 183967)cpicpiB109
CSPI04G05530Wild cucumber (PI 183967)cpicpiB163
CSPI04G05530Cucumber (Gy14) v1cgycpiB130
CSPI04G05530Cucumber (Gy14) v1cgycpiB505
CSPI04G05530Cucurbita maxima (Rimu)cmacpiB342
CSPI04G05530Cucurbita maxima (Rimu)cmacpiB675
CSPI04G05530Cucurbita maxima (Rimu)cmacpiB721
CSPI04G05530Cucurbita moschata (Rifu)cmocpiB332
CSPI04G05530Cucurbita moschata (Rifu)cmocpiB666
CSPI04G05530Cucurbita moschata (Rifu)cmocpiB715
CSPI04G05530Cucumber (Chinese Long) v2cpicuB201
CSPI04G05530Melon (DHL92) v3.5.1cpimeB310
CSPI04G05530Melon (DHL92) v3.5.1cpimeB338
CSPI04G05530Watermelon (Charleston Gray)cpiwcgB300
CSPI04G05530Watermelon (Charleston Gray)cpiwcgB342
CSPI04G05530Watermelon (97103) v1cpiwmB313
CSPI04G05530Watermelon (97103) v1cpiwmB335
CSPI04G05530Cucurbita pepo (Zucchini)cpecpiB114
CSPI04G05530Cucurbita pepo (Zucchini)cpecpiB223
CSPI04G05530Cucurbita pepo (Zucchini)cpecpiB397
CSPI04G05530Bottle gourd (USVL1VR-Ls)cpilsiB252
CSPI04G05530Bottle gourd (USVL1VR-Ls)cpilsiB303
CSPI04G05530Melon (DHL92) v3.6.1cpimedB301
CSPI04G05530Melon (DHL92) v3.6.1cpimedB328
CSPI04G05530Cucumber (Gy14) v2cgybcpiB168
CSPI04G05530Cucumber (Gy14) v2cgybcpiB279
CSPI04G05530Silver-seed gourdcarcpiB0444
CSPI04G05530Silver-seed gourdcarcpiB0981
CSPI04G05530Silver-seed gourdcarcpiB1057