CSPI04G01670.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI04G01670.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionBAG family molecular chaperone regulator 5
LocationChr4 : 932542 .. 932865 (+)
Sequence length258
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTGCTGTTTAGGTTGGAATATTCGGTGAAAGGCGTGGACTCTGGAATTAGGAATTTCAGGAAAGCGGTGATTAAGAAGGCTATTGCATTAGAGGAGAAGATCGATTCAATTGCTGCTGCGAATGAAGCTACTAATGTGATTGATGACTCTCGAACCCGTGACTGGAGCAGAAGCTGTTGATCCGAGTTCGGAAGGAACTCGGATCTCAAGGTTATAATTCCAGAGCACTTGGATGATAATTCTACTGCTGATAACGCTAATCCCGAATCTGCTGATGATTGTGATGGTGGGAATGCCGATATGGAGTTTCTAAGTTGA

mRNA sequence

ATGAATTTGCTGTTTAGGTTGGAATATTCGGTGAAAGGCGTGGACTCTGGAATTAGGAATTTCAGGAAAGCGGTGATTAAGAAGGCTATTGCATTAGAGGAGAAGATCGATTCAATTGCTGCTGCGAATGAAGCTACTAATGTGATTGATGACTCTCGAACCCAGCACTTGGATGATAATTCTACTGCTGATAACGCTAATCCCGAATCTGCTGATGATTGTGATGGTGGGAATGCCGATATGGAGTTTCTAAGTTGA

Coding sequence (CDS)

ATGAATTTGCTGTTTAGGTTGGAATATTCGGTGAAAGGCGTGGACTCTGGAATTAGGAATTTCAGGAAAGCGGTGATTAAGAAGGCTATTGCATTAGAGGAGAAGATCGATTCAATTGCTGCTGCGAATGAAGCTACTAATGTGATTGATGACTCTCGAACCCAGCACTTGGATGATAATTCTACTGCTGATAACGCTAATCCCGAATCTGCTGATGATTGTGATGGTGGGAATGCCGATATGGAGTTTCTAAGTTGA
Homology
[Close]
BLAST of CSPI04G01670.1 vs. TrEMBL
Match: A0A0A0KVI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006110 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.9e-19
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1  MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDDSRTQ 56
          MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVID+SRT+
Sbjct: 1  MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDNSRTR 55

[Close]
BLAST of CSPI04G01670.1 vs. TrEMBL
Match: A0A0A0KTW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011820 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.1e-15
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 1 

Query: 1   MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDDSRTQHLDDN 60
           MNLLFRL+ SVKGVDSGIRN RKAVIKKAIAL+EKIDSIAAAN ATNVI ++  + +   
Sbjct: 116 MNLLFRLD-SVKGVDSGIRNLRKAVIKKAIALQEKIDSIAAANGATNVIYET-LEPVTAK 175

Query: 61  STADNANPESADDCDGGNAD 81
             ++  + ESAD+CDG NAD
Sbjct: 176 CDSEAVDRESADECDGENAD 193

[Close]
BLAST of CSPI04G01670.1 vs. TrEMBL
Match: W9QTU5_9ROSA (BAG family molecular chaperone regulator 5 OS=Morus notabilis GN=L484_017479 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.1e-07
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 1 

Query: 1   MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVI--DDSRTQHLD 60
           MNLL RL+ SV+GVDSG+R+FRKAVIKKAIAL+E+ID+I A ++AT+ +  ++S ++  D
Sbjct: 116 MNLLLRLD-SVRGVDSGVRDFRKAVIKKAIALQERIDAIVAGDQATSDVANEESISKSAD 175

Query: 61  DNSTADNANPESADDCD 76
             +   ++   S  D D
Sbjct: 176 QAAETKDSGVSSGGDDD 191

[Close]
BLAST of CSPI04G01670.1 vs. TrEMBL
Match: B9GZD2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16590g PE=4 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-06
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 1 

Query: 1   MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDDSRTQHLDDN 60
           M+LL +L+ SV+GVDSG+R+ RKAVIKKAIAL+E +DSIAAA    + +  +  + LD+ 
Sbjct: 108 MSLLLKLD-SVRGVDSGVRDCRKAVIKKAIALQETVDSIAAAANGDDSVVSAGEKGLDET 167

Query: 61  STADNAN---PESADDCDGGNADME 83
              +  N     +AD+   G A+ E
Sbjct: 168 GEGEEENGSVANAADELQNGAAESE 191

[Close]
BLAST of CSPI04G01670.1 vs. NCBI nr
Match: gi|700197746|gb|KGN52904.1| (hypothetical protein Csa_4G006110 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1  MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDDSRTQ 56
          MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVID+SRT+
Sbjct: 1  MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDNSRTR 55

[Close]
BLAST of CSPI04G01670.1 vs. NCBI nr
Match: gi|659108111|ref|XP_008454024.1| (PREDICTED: BAG family molecular chaperone regulator 6-like [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 4.8e-17
Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 1 

Query: 1   MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDDSRTQHLDDN 60
           MNLLFRL+ SVKGVDSGIR+FRKAVIKKAIAL+EKIDSIAAANEATNVID++  + +   
Sbjct: 116 MNLLFRLD-SVKGVDSGIRSFRKAVIKKAIALQEKIDSIAAANEATNVIDET-LEPVTAE 175

Query: 61  STADNANPESADDCDGGNAD 81
              +  + ESADDCDG NAD
Sbjct: 176 CGCEGVDRESADDCDGENAD 193

[Close]
BLAST of CSPI04G01670.1 vs. NCBI nr
Match: gi|449468822|ref|XP_004152120.1| (PREDICTED: BAG family molecular chaperone regulator 6-like [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 1 

Query: 1   MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDDSRTQHLDDN 60
           MNLLFRL+ SVKGVDSGIRN RKAVIKKAIAL+EKIDSIAAAN ATNVI ++  + +   
Sbjct: 116 MNLLFRLD-SVKGVDSGIRNLRKAVIKKAIALQEKIDSIAAANGATNVIYET-LEPVTAK 175

Query: 61  STADNANPESADDCDGGNAD 81
             ++  + ESAD+CDG NAD
Sbjct: 176 CDSEAVDRESADECDGENAD 193

[Close]
BLAST of CSPI04G01670.1 vs. NCBI nr
Match: gi|700197877|gb|KGN53035.1| (hypothetical protein Csa_4G011820 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 1 

Query: 1   MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVIDDSRTQHLDDN 60
           MNLLFRL+ SVKGVDSGIRN RKAVIKKAIAL+EKIDSIAAAN ATNVI ++  + +   
Sbjct: 116 MNLLFRLD-SVKGVDSGIRNLRKAVIKKAIALQEKIDSIAAANGATNVIYET-LEPVTAK 175

Query: 61  STADNANPESADDCDGGNAD 81
             ++  + ESAD+CDG NAD
Sbjct: 176 CDSEAVDRESADECDGENAD 193

[Close]
BLAST of CSPI04G01670.1 vs. NCBI nr
Match: gi|703077757|ref|XP_010090673.1| (BAG family molecular chaperone regulator 5 [Morus notabilis])

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-07
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 1 

Query: 1   MNLLFRLEYSVKGVDSGIRNFRKAVIKKAIALEEKIDSIAAANEATNVI--DDSRTQHLD 60
           MNLL RL+ SV+GVDSG+R+FRKAVIKKAIAL+E+ID+I A ++AT+ +  ++S ++  D
Sbjct: 116 MNLLLRLD-SVRGVDSGVRDFRKAVIKKAIALQERIDAIVAGDQATSDVANEESISKSAD 175

Query: 61  DNSTADNANPESADDCD 76
             +   ++   S  D D
Sbjct: 176 QAAETKDSGVSSGGDDD 191

The following BLAST results are available for this feature:
BLAST of CSPI04G01670.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G01670.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVI0_CUCSA7.9e-1996.36Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006110 PE=4 SV=1[more]
A0A0A0KTW1_CUCSA9.1e-1567.50Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011820 PE=4 SV=1[more]
W9QTU5_9ROSA4.1e-0749.35BAG family molecular chaperone regulator 5 OS=Morus notabilis GN=L484_017479 PE=... [more]
B9GZD2_POPTR4.5e-0644.71Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16590g PE=4 SV=2[more]
BLAST of CSPI04G01670.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G01670.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197746|gb|KGN52904.1|1.1e-1896.36hypothetical protein Csa_4G006110 [Cucumis sativus][more]
gi|659108111|ref|XP_008454024.1|4.8e-1771.25PREDICTED: BAG family molecular chaperone regulator 6-like [Cucumis melo][more]
gi|449468822|ref|XP_004152120.1|1.3e-1467.50PREDICTED: BAG family molecular chaperone regulator 6-like [Cucumis sativus][more]
gi|700197877|gb|KGN53035.1|1.3e-1467.50hypothetical protein Csa_4G011820 [Cucumis sativus][more]
gi|703077757|ref|XP_010090673.1|5.9e-0749.35BAG family molecular chaperone regulator 5 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0051087 chaperone binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI04G01670CSPI04G01670gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI04G01670.1CSPI04G01670.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G01670.1.cds1CSPI04G01670.1.cds1CDS
CSPI04G01670.1.cds2CSPI04G01670.1.cds2CDS


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33322FAMILY NOT NAMEDcoord: 1..46
score: 1.9
NoneNo IPR availablePANTHERPTHR33322:SF6SUBFAMILY NOT NAMEDcoord: 1..46
score: 1.9