CSPI03G42380.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI03G42380.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 36427852 .. 36428314 (-)
Sequence length258
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTTCTGACGGCAACACAACTCTAACCGGATGTAGGAGAGCCGATAATTTCGGCTGCTAGGGTTCCCCTGGCGGTGCCAAAAGTTACCATGGCTAGGGTTAGGATTCAAGTATACTTTTAACGATTGACGGCAGCTCACGACAGCACAATCAACGTAAACAAAACAAAACCCGAATTTTTTCGGCCATATTCAGTGGGGGCGCGATGCGGTCAGCGGCGAATGGTCGGAGATGGGCGATCGACGATGACGAAATGCGACGCCAATTGCTAAGATATGACCGGCCGACGGGTAAAGGCAAAACCCATACCATAAAACGGACCACCTGCGGGCAAAAAGTCGAGCGAAGGAGAACGATTGCTCGCCGATTGAAGATTCCGGTGAGCTCTGAGTTACTGGAGGTGGTGGCGGACGAGAGAGAGGTTCGACAGCAACACAAACTAGGGTTTTTGTTTAGTTTGTAA

mRNA sequence

ATGCGGTCAGCGGCGAATGGTCGGAGATGGGCGATCGACGATGACGAAATGCGACGCCAATTGCTAAGATATGACCGGCCGACGGGTAAAGGCAAAACCCATACCATAAAACGGACCACCTGCGGGCAAAAAGTCGAGCGAAGGAGAACGATTGCTCGCCGATTGAAGATTCCGGTGAGCTCTGAGTTACTGGAGGTGGTGGCGGACGAGAGAGAGGTTCGACAGCAACACAAACTAGGGTTTTTGTTTAGTTTGTAA

Coding sequence (CDS)

ATGCGGTCAGCGGCGAATGGTCGGAGATGGGCGATCGACGATGACGAAATGCGACGCCAATTGCTAAGATATGACCGGCCGACGGGTAAAGGCAAAACCCATACCATAAAACGGACCACCTGCGGGCAAAAAGTCGAGCGAAGGAGAACGATTGCTCGCCGATTGAAGATTCCGGTGAGCTCTGAGTTACTGGAGGTGGTGGCGGACGAGAGAGAGGTTCGACAGCAACACAAACTAGGGTTTTTGTTTAGTTTGTAA
Homology
[Close]
BLAST of CSPI03G42380.1 vs. TrEMBL
Match: A0A0A0LG13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G854200 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.4e-38
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 1 

Query: 1  MRSAANGRRWAIDDDEMRRQLLRYDRPTGKGKTHTIKRTTCGQKVERRRTIARRLKIPVS 60
          MRSAANGRRWAIDDDEMRRQLL YDRPTGKGKTHTIKRTTCGQKVERRRTIA RLKIPVS
Sbjct: 1  MRSAANGRRWAIDDDEMRRQLLIYDRPTGKGKTHTIKRTTCGQKVERRRTIAHRLKIPVS 60

Query: 61 SELLEVVADEREVRQQHKLGFLFSL 86
          SELLEVVADEREVRQQHKLGFLFSL
Sbjct: 61 SELLEVVADEREVRQQHKLGFLFSL 85

[Close]
BLAST of CSPI03G42380.1 vs. NCBI nr
Match: gi|700204791|gb|KGN59924.1| (hypothetical protein Csa_3G854200 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 4.9e-38
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 1 

Query: 1  MRSAANGRRWAIDDDEMRRQLLRYDRPTGKGKTHTIKRTTCGQKVERRRTIARRLKIPVS 60
          MRSAANGRRWAIDDDEMRRQLL YDRPTGKGKTHTIKRTTCGQKVERRRTIA RLKIPVS
Sbjct: 1  MRSAANGRRWAIDDDEMRRQLLIYDRPTGKGKTHTIKRTTCGQKVERRRTIAHRLKIPVS 60

Query: 61 SELLEVVADEREVRQQHKLGFLFSL 86
          SELLEVVADEREVRQQHKLGFLFSL
Sbjct: 61 SELLEVVADEREVRQQHKLGFLFSL 85

The following BLAST results are available for this feature:
BLAST of CSPI03G42380.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G42380.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LG13_CUCSA3.4e-3897.65Uncharacterized protein OS=Cucumis sativus GN=Csa_3G854200 PE=4 SV=1[more]
BLAST of CSPI03G42380.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G42380.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204791|gb|KGN59924.1|4.9e-3897.65hypothetical protein Csa_3G854200 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G42380CSPI03G42380gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G42380.1CSPI03G42380.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G42380.1.cds1CSPI03G42380.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G42380.1.utr5p1CSPI03G42380.1.utr5p1five_prime_UTR