CSPI03G42380 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G42380
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 36427852 .. 36428314 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTTCTGACGGCAACACAACTCTAACCGGATGTAGGAGAGCCGATAATTTCGGCTGCTAGGGTTCCCCTGGCGGTGCCAAAAGTTACCATGGCTAGGGTTAGGATTCAAGTATACTTTTAACGATTGACGGCAGCTCACGACAGCACAATCAACGTAAACAAAACAAAACCCGAATTTTTTCGGCCATATTCAGTGGGGGCGCGATGCGGTCAGCGGCGAATGGTCGGAGATGGGCGATCGACGATGACGAAATGCGACGCCAATTGCTAAGATATGACCGGCCGACGGGTAAAGGCAAAACCCATACCATAAAACGGACCACCTGCGGGCAAAAAGTCGAGCGAAGGAGAACGATTGCTCGCCGATTGAAGATTCCGGTGAGCTCTGAGTTACTGGAGGTGGTGGCGGACGAGAGAGAGGTTCGACAGCAACACAAACTAGGGTTTTTGTTTAGTTTGTAA

mRNA sequence

ATGCGGTCAGCGGCGAATGGTCGGAGATGGGCGATCGACGATGACGAAATGCGACGCCAATTGCTAAGATATGACCGGCCGACGGGTAAAGGCAAAACCCATACCATAAAACGGACCACCTGCGGGCAAAAAGTCGAGCGAAGGAGAACGATTGCTCGCCGATTGAAGATTCCGGTGAGCTCTGAGTTACTGGAGGTGGTGGCGGACGAGAGAGAGGTTCGACAGCAACACAAACTAGGGTTTTTGTTTAGTTTGTAA

Coding sequence (CDS)

ATGCGGTCAGCGGCGAATGGTCGGAGATGGGCGATCGACGATGACGAAATGCGACGCCAATTGCTAAGATATGACCGGCCGACGGGTAAAGGCAAAACCCATACCATAAAACGGACCACCTGCGGGCAAAAAGTCGAGCGAAGGAGAACGATTGCTCGCCGATTGAAGATTCCGGTGAGCTCTGAGTTACTGGAGGTGGTGGCGGACGAGAGAGAGGTTCGACAGCAACACAAACTAGGGTTTTTGTTTAGTTTGTAA
Homology
[Close]
BLAST of CSPI03G42380 vs. TrEMBL
Match: A0A0A0LG13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G854200 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.4e-38
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 1 

Query: 1  MRSAANGRRWAIDDDEMRRQLLRYDRPTGKGKTHTIKRTTCGQKVERRRTIARRLKIPVS 60
          MRSAANGRRWAIDDDEMRRQLL YDRPTGKGKTHTIKRTTCGQKVERRRTIA RLKIPVS
Sbjct: 1  MRSAANGRRWAIDDDEMRRQLLIYDRPTGKGKTHTIKRTTCGQKVERRRTIAHRLKIPVS 60

Query: 61 SELLEVVADEREVRQQHKLGFLFSL 86
          SELLEVVADEREVRQQHKLGFLFSL
Sbjct: 61 SELLEVVADEREVRQQHKLGFLFSL 85

[Close]
BLAST of CSPI03G42380 vs. NCBI nr
Match: gi|700204791|gb|KGN59924.1| (hypothetical protein Csa_3G854200 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 4.9e-38
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 1 

Query: 1  MRSAANGRRWAIDDDEMRRQLLRYDRPTGKGKTHTIKRTTCGQKVERRRTIARRLKIPVS 60
          MRSAANGRRWAIDDDEMRRQLL YDRPTGKGKTHTIKRTTCGQKVERRRTIA RLKIPVS
Sbjct: 1  MRSAANGRRWAIDDDEMRRQLLIYDRPTGKGKTHTIKRTTCGQKVERRRTIAHRLKIPVS 60

Query: 61 SELLEVVADEREVRQQHKLGFLFSL 86
          SELLEVVADEREVRQQHKLGFLFSL
Sbjct: 61 SELLEVVADEREVRQQHKLGFLFSL 85

The following BLAST results are available for this feature:
BLAST of CSPI03G42380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G42380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LG13_CUCSA3.4e-3897.65Uncharacterized protein OS=Cucumis sativus GN=Csa_3G854200 PE=4 SV=1[more]
BLAST of CSPI03G42380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G42380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204791|gb|KGN59924.1|4.9e-3897.65hypothetical protein Csa_3G854200 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G42380.1CSPI03G42380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G42380Csa3G854200Cucumber (Chinese Long) v2cpicuB120
CSPI03G42380CsaV3_3G044800Cucumber (Chinese Long) v3cpicucB145
CSPI03G42380CsGy3G039890Cucumber (Gy14) v2cgybcpiB111
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G42380Wax gourdcpiwgoB225
CSPI03G42380Wax gourdcpiwgoB319
CSPI03G42380Wild cucumber (PI 183967)cpicpiB058
CSPI03G42380Cucumber (Gy14) v1cgycpiB342
CSPI03G42380Cucumber (Gy14) v1cgycpiB504
CSPI03G42380Cucurbita maxima (Rimu)cmacpiB017
CSPI03G42380Cucurbita maxima (Rimu)cmacpiB185
CSPI03G42380Cucurbita maxima (Rimu)cmacpiB447
CSPI03G42380Cucurbita maxima (Rimu)cmacpiB804
CSPI03G42380Cucurbita moschata (Rifu)cmocpiB008
CSPI03G42380Cucurbita moschata (Rifu)cmocpiB170
CSPI03G42380Cucurbita moschata (Rifu)cmocpiB435
CSPI03G42380Cucumber (Chinese Long) v2cpicuB110
CSPI03G42380Melon (DHL92) v3.5.1cpimeB195
CSPI03G42380Melon (DHL92) v3.5.1cpimeB215
CSPI03G42380Watermelon (Charleston Gray)cpiwcgB238
CSPI03G42380Watermelon (Charleston Gray)cpiwcgB272
CSPI03G42380Watermelon (97103) v1cpiwmB209
CSPI03G42380Watermelon (97103) v1cpiwmB243
CSPI03G42380Cucurbita pepo (Zucchini)cpecpiB106
CSPI03G42380Cucurbita pepo (Zucchini)cpecpiB558
CSPI03G42380Cucurbita pepo (Zucchini)cpecpiB781
CSPI03G42380Cucurbita pepo (Zucchini)cpecpiB829
CSPI03G42380Bottle gourd (USVL1VR-Ls)cpilsiB190
CSPI03G42380Bottle gourd (USVL1VR-Ls)cpilsiB239
CSPI03G42380Melon (DHL92) v3.6.1cpimedB189
CSPI03G42380Melon (DHL92) v3.6.1cpimedB209
CSPI03G42380Cucumber (Gy14) v2cgybcpiB067
CSPI03G42380Silver-seed gourdcarcpiB0116
CSPI03G42380Silver-seed gourdcarcpiB0210
CSPI03G42380Cucumber (Chinese Long) v3cpicucB135
CSPI03G42380Watermelon (97103) v2cpiwmbB197
CSPI03G42380Watermelon (97103) v2cpiwmbB222
CSPI03G42380Watermelon (97103) v2cpiwmbB256