CSPI03G42310.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI03G42310.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 36389590 .. 36389799 (-)
Sequence length210
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCAGAGGCTAATTCCGTAAACCCCGATGCGAGAAGAGAGCAAGAAGAAGTTATGTACAATAGAGTTGTGAAAAGGTTGATTGACGTTTTAACTCAACAACCTGAGGAGAAATTTGGATTTAAAAGACTGAAAGCATTGGGAGCCACTACTGAGTTTAGTGGAACCAATAGACCCGAAGAAGTTGAAAAATGGTTAAAAACATAG

mRNA sequence

ATGAACTCAGAGGCTAATTCCGTAAACCCCGATGCGAGAAGAGAGCAAGAAGAAGTTATGTACAATAGAGTTGTGAAAAGGTTGATTGACGTTTTAACTCAACAACCTGAGGAGAAATTTGGATTTAAAAGACTGAAAGCATTGGGAGCCACTACTGAGTTTAGTGGAACCAATAGACCCGAAGAAGTTGAAAAATGGTTAAAAACATAG

Coding sequence (CDS)

ATGAACTCAGAGGCTAATTCCGTAAACCCCGATGCGAGAAGAGAGCAAGAAGAAGTTATGTACAATAGAGTTGTGAAAAGGTTGATTGACGTTTTAACTCAACAACCTGAGGAGAAATTTGGATTTAAAAGACTGAAAGCATTGGGAGCCACTACTGAGTTTAGTGGAACCAATAGACCCGAAGAAGTTGAAAAATGGTTAAAAACATAG
Homology
[Close]
BLAST of CSPI03G42310.1 vs. TrEMBL
Match: A0A0A0L7X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.0e-17
Identity = 44/69 (63.77%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1  MNSEANSVNPDARREQEEVMYNRVVKRLIDVLTQQPEEKFGFKRLKALGATTEFSGTNRP 60
          MNSEA+SVN +A +EQ+EV+Y+RV +RL+D++  QPE+KFG +RLKALGA TEF+GT +P
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGA-TEFTGTTKP 60

Query: 61 EEVEKWLKT 70
          EE EKW++T
Sbjct: 61 EEFEKWIRT 68

[Close]
BLAST of CSPI03G42310.1 vs. TrEMBL
Match: A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.4e-12
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 1 

Query: 1  MNSEANSVNPDARREQEEVMYNRVVKRLIDVLTQQPEEKFGFKRLKALGATTEFSGTNRP 60
          ++SEA+++NP+ARRE+EE +Y+R  +RLI+ L QQ ++ FG +R+KALGA TEF+G    
Sbjct: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGA-TEFNGIENH 64

Query: 61 EEVEKWLKT 70
          EE EKW++T
Sbjct: 65 EEAEKWIRT 72

[Close]
BLAST of CSPI03G42310.1 vs. NCBI nr
Match: gi|700202872|gb|KGN58005.1| (hypothetical protein Csa_3G426910 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 8.7e-17
Identity = 44/69 (63.77%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1  MNSEANSVNPDARREQEEVMYNRVVKRLIDVLTQQPEEKFGFKRLKALGATTEFSGTNRP 60
          MNSEA+SVN +A +EQ+EV+Y+RV +RL+D++  QPE+KFG +RLKALGA TEF+GT +P
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGA-TEFTGTTKP 60

Query: 61 EEVEKWLKT 70
          EE EKW++T
Sbjct: 61 EEFEKWIRT 68

[Close]
BLAST of CSPI03G42310.1 vs. NCBI nr
Match: gi|700206416|gb|KGN61535.1| (hypothetical protein Csa_2G163160 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-12
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 1 

Query: 1  MNSEANSVNPDARREQEEVMYNRVVKRLIDVLTQQPEEKFGFKRLKALGATTEFSGTNRP 60
          ++SEA+++NP+ARRE+EE +Y+R  +RLI+ L QQ ++ FG +R+KALGA TEF+G    
Sbjct: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGA-TEFNGIENH 64

Query: 61 EEVEKWLKT 70
          EE EKW++T
Sbjct: 65 EEAEKWIRT 72

The following BLAST results are available for this feature:
BLAST of CSPI03G42310.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G42310.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7X2_CUCSA6.0e-1763.77Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1[more]
A0A0A0LI31_CUCSA3.4e-1253.62Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1[more]
BLAST of CSPI03G42310.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G42310.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202872|gb|KGN58005.1|8.7e-1763.77hypothetical protein Csa_3G426910 [Cucumis sativus][more]
gi|700206416|gb|KGN61535.1|4.9e-1253.62hypothetical protein Csa_2G163160 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G42310CSPI03G42310gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G42310.1CSPI03G42310.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G42310.1.cds1CSPI03G42310.1.cds1CDS