CSPI03G42310 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G42310
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 36389590 .. 36389799 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCAGAGGCTAATTCCGTAAACCCCGATGCGAGAAGAGAGCAAGAAGAAGTTATGTACAATAGAGTTGTGAAAAGGTTGATTGACGTTTTAACTCAACAACCTGAGGAGAAATTTGGATTTAAAAGACTGAAAGCATTGGGAGCCACTACTGAGTTTAGTGGAACCAATAGACCCGAAGAAGTTGAAAAATGGTTAAAAACATAG

mRNA sequence

ATGAACTCAGAGGCTAATTCCGTAAACCCCGATGCGAGAAGAGAGCAAGAAGAAGTTATGTACAATAGAGTTGTGAAAAGGTTGATTGACGTTTTAACTCAACAACCTGAGGAGAAATTTGGATTTAAAAGACTGAAAGCATTGGGAGCCACTACTGAGTTTAGTGGAACCAATAGACCCGAAGAAGTTGAAAAATGGTTAAAAACATAG

Coding sequence (CDS)

ATGAACTCAGAGGCTAATTCCGTAAACCCCGATGCGAGAAGAGAGCAAGAAGAAGTTATGTACAATAGAGTTGTGAAAAGGTTGATTGACGTTTTAACTCAACAACCTGAGGAGAAATTTGGATTTAAAAGACTGAAAGCATTGGGAGCCACTACTGAGTTTAGTGGAACCAATAGACCCGAAGAAGTTGAAAAATGGTTAAAAACATAG
Homology
[Close]
BLAST of CSPI03G42310 vs. TrEMBL
Match: A0A0A0L7X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.0e-17
Identity = 44/69 (63.77%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1  MNSEANSVNPDARREQEEVMYNRVVKRLIDVLTQQPEEKFGFKRLKALGATTEFSGTNRP 60
          MNSEA+SVN +A +EQ+EV+Y+RV +RL+D++  QPE+KFG +RLKALGA TEF+GT +P
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGA-TEFTGTTKP 60

Query: 61 EEVEKWLKT 70
          EE EKW++T
Sbjct: 61 EEFEKWIRT 68

[Close]
BLAST of CSPI03G42310 vs. TrEMBL
Match: A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.4e-12
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 1 

Query: 1  MNSEANSVNPDARREQEEVMYNRVVKRLIDVLTQQPEEKFGFKRLKALGATTEFSGTNRP 60
          ++SEA+++NP+ARRE+EE +Y+R  +RLI+ L QQ ++ FG +R+KALGA TEF+G    
Sbjct: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGA-TEFNGIENH 64

Query: 61 EEVEKWLKT 70
          EE EKW++T
Sbjct: 65 EEAEKWIRT 72

[Close]
BLAST of CSPI03G42310 vs. NCBI nr
Match: gi|700202872|gb|KGN58005.1| (hypothetical protein Csa_3G426910 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 8.7e-17
Identity = 44/69 (63.77%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1  MNSEANSVNPDARREQEEVMYNRVVKRLIDVLTQQPEEKFGFKRLKALGATTEFSGTNRP 60
          MNSEA+SVN +A +EQ+EV+Y+RV +RL+D++  QPE+KFG +RLKALGA TEF+GT +P
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGA-TEFTGTTKP 60

Query: 61 EEVEKWLKT 70
          EE EKW++T
Sbjct: 61 EEFEKWIRT 68

[Close]
BLAST of CSPI03G42310 vs. NCBI nr
Match: gi|700206416|gb|KGN61535.1| (hypothetical protein Csa_2G163160 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-12
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 1 

Query: 1  MNSEANSVNPDARREQEEVMYNRVVKRLIDVLTQQPEEKFGFKRLKALGATTEFSGTNRP 60
          ++SEA+++NP+ARRE+EE +Y+R  +RLI+ L QQ ++ FG +R+KALGA TEF+G    
Sbjct: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGA-TEFNGIENH 64

Query: 61 EEVEKWLKT 70
          EE EKW++T
Sbjct: 65 EEAEKWIRT 72

The following BLAST results are available for this feature:
BLAST of CSPI03G42310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G42310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7X2_CUCSA6.0e-1763.77Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1[more]
A0A0A0LI31_CUCSA3.4e-1253.62Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1[more]
BLAST of CSPI03G42310 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G42310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202872|gb|KGN58005.1|8.7e-1763.77hypothetical protein Csa_3G426910 [Cucumis sativus][more]
gi|700206416|gb|KGN61535.1|4.9e-1253.62hypothetical protein Csa_2G163160 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G42310.1CSPI03G42310.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G42310Silver-seed gourdcarcpiB0116
CSPI03G42310Silver-seed gourdcarcpiB0210
CSPI03G42310Cucumber (Chinese Long) v3cpicucB135
CSPI03G42310Cucumber (Chinese Long) v3cpicucB145
CSPI03G42310Watermelon (97103) v2cpiwmbB197
CSPI03G42310Watermelon (97103) v2cpiwmbB222
CSPI03G42310Watermelon (97103) v2cpiwmbB256
CSPI03G42310Wax gourdcpiwgoB225
CSPI03G42310Wax gourdcpiwgoB319
CSPI03G42310Wax gourdcpiwgoB344
CSPI03G42310Wild cucumber (PI 183967)cpicpiB058
CSPI03G42310Cucumber (Gy14) v1cgycpiB342
CSPI03G42310Cucumber (Gy14) v1cgycpiB504
CSPI03G42310Cucurbita maxima (Rimu)cmacpiB017
CSPI03G42310Cucurbita maxima (Rimu)cmacpiB185
CSPI03G42310Cucurbita maxima (Rimu)cmacpiB447
CSPI03G42310Cucurbita maxima (Rimu)cmacpiB804
CSPI03G42310Cucurbita moschata (Rifu)cmocpiB008
CSPI03G42310Cucurbita moschata (Rifu)cmocpiB170
CSPI03G42310Cucurbita moschata (Rifu)cmocpiB435
CSPI03G42310Cucumber (Chinese Long) v2cpicuB110
CSPI03G42310Cucumber (Chinese Long) v2cpicuB120
CSPI03G42310Melon (DHL92) v3.5.1cpimeB195
CSPI03G42310Melon (DHL92) v3.5.1cpimeB215
CSPI03G42310Watermelon (Charleston Gray)cpiwcgB238
CSPI03G42310Watermelon (Charleston Gray)cpiwcgB272
CSPI03G42310Watermelon (97103) v1cpiwmB209
CSPI03G42310Watermelon (97103) v1cpiwmB243
CSPI03G42310Cucurbita pepo (Zucchini)cpecpiB106
CSPI03G42310Cucurbita pepo (Zucchini)cpecpiB558
CSPI03G42310Cucurbita pepo (Zucchini)cpecpiB781
CSPI03G42310Cucurbita pepo (Zucchini)cpecpiB829
CSPI03G42310Bottle gourd (USVL1VR-Ls)cpilsiB190
CSPI03G42310Bottle gourd (USVL1VR-Ls)cpilsiB239
CSPI03G42310Melon (DHL92) v3.6.1cpimedB189
CSPI03G42310Melon (DHL92) v3.6.1cpimedB209
CSPI03G42310Cucumber (Gy14) v2cgybcpiB067
CSPI03G42310Cucumber (Gy14) v2cgybcpiB111