CSPI03G23470.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATTGAAACTGTTTCACATTTCAAGTTTGTATAAGTTTTTGTCATAAAGGATGATCATGTCAAAGAGAATGACACTTGTTTTTATTGGGATTCTCTTGGTTAGCTTCGACATGATTATGATCACAAATGCAAGAAAATTCATTGATTACGGTTCTATTGTTGCAGGAGATGTTAGCCCTGGATGTAGCCCAACGCACCCTGAACTTTGTAGAGTAAAGAGCGCAAATCCATACCAAAGAGGTTGCAATCGAATCGATCGTTGTAGAGAGGGAAATGATATTATTGACGCTGAAGAAGAACATATTGAAGGGGATGCATCGATTAGCCCTTCAATAAGCCCTAATACAGAATTAAATCTTGATTGAATTGAATTGATATAATATTTATTTATATTTATCTAAAACAAAATTATTTATGTCTAGTCATTTGATGAATGATTGAATAATGTAATCATTAGATGTCTGACAAGGCTTGAAAGCTATGTGTAATATGTAACTGGTAAGGTTGCTTAAAGGACAATTATGCAACAATATATGCTAATTTTTATGGAGAATTGAAAAATAGCTGCAAATGTAAGTAATTTGGAAAAGGTAAAGACGGACCAATTCACCTTGACAAAAAAATTATTTGTAAAAACCCTTGCTTATTACTGTACTGTG ATGATCATGTCAAAGAGAATGACACTTGTTTTTATTGGGATTCTCTTGGTTAGCTTCGACATGATTATGATCACAAATGCAAGAAAATTCATTGATTACGGTTCTATTGTTGCAGGAGATGTTAGCCCTGGATGTAGCCCAACGCACCCTGAACTTTGTAGAGTAAAGAGCGCAAATCCATACCAAAGAGGTTGCAATCGAATCGATCGTTGTAGAGAGGGAAATGATATTATTGACGCTGAAGAAGAACATATTGAAGGGGATGCATCGATTAGCCCTTCAATAAGCCCTAATACAGAATTAAATCTTGATTGA ATGATCATGTCAAAGAGAATGACACTTGTTTTTATTGGGATTCTCTTGGTTAGCTTCGACATGATTATGATCACAAATGCAAGAAAATTCATTGATTACGGTTCTATTGTTGCAGGAGATGTTAGCCCTGGATGTAGCCCAACGCACCCTGAACTTTGTAGAGTAAAGAGCGCAAATCCATACCAAAGAGGTTGCAATCGAATCGATCGTTGTAGAGAGGGAAATGATATTATTGACGCTGAAGAAGAACATATTGAAGGGGATGCATCGATTAGCCCTTCAATAAGCCCTAATACAGAATTAAATCTTGATTGA
BLAST of CSPI03G23470.1 vs. Swiss-Prot
Match: RLF9_ARATH (Protein RALF-like 9 OS=Arabidopsis thaliana GN=RALFL9 PE=3 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07 Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1
BLAST of CSPI03G23470.1 vs. TrEMBL
Match: A0A0A0L8B1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426350 PE=4 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 2.6e-48 Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1
BLAST of CSPI03G23470.1 vs. TrEMBL
Match: A0A067F0E4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041712mg PE=4 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07 Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1
BLAST of CSPI03G23470.1 vs. TrEMBL
Match: V4UF46_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018043mg PE=4 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07 Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1
BLAST of CSPI03G23470.1 vs. TAIR10
Match: AT1G61566.1 (AT1G61566.1 ralf-like 9) HSP 1 Score: 57.4 bits (137), Expect = 6.2e-09 Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1
BLAST of CSPI03G23470.1 vs. TAIR10
Match: AT2G22055.1 (AT2G22055.1 RALF-like 15) HSP 1 Score: 49.3 bits (116), Expect = 1.7e-06 Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 1
BLAST of CSPI03G23470.1 vs. NCBI nr
Match: gi|700202865|gb|KGN57998.1| (hypothetical protein Csa_3G426350 [Cucumis sativus]) HSP 1 Score: 199.1 bits (505), Expect = 3.8e-48 Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1
BLAST of CSPI03G23470.1 vs. NCBI nr
Match: gi|567910725|ref|XP_006447676.1| (hypothetical protein CICLE_v10018043mg [Citrus clementina]) HSP 1 Score: 63.5 bits (153), Expect = 2.5e-07 Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
|