CSPI03G19080.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAGGAGCGTGTGGAAGCCATGGCCTCTCATTCCCATGGTCCCATGATTGTTGATAAAAGGACAGAGTATTAGCTCGTAGCCTTTCATTTCATTTCTTATCTACAGGTGTGGGCTCCTCTTCTACTACAAGCTGAGTAAGGCATACGAATAAGATCCAGAAGTCAGTGGCCATTCATCTTGGTAGAGCAGCAAAATGACCAGTTCACCAGCACTTTCCAGTGTGACATTGAACACCTCGTTTCTCCAGAAGCAGCCAGCAGCAAGGATAAGGTTGGTGTTGAACTTTGGCCAAGATTTGTTTGGGCTGAAGGGTGGCAGCAGCCGAGGTGGGCGAGTGATTGCAATGGCAGAGTACAACGTGAAGTTGATCACACCAACAGGAGAGACGGAGTTCAAGTGCCCGGATGACGAATACATTCTTGATCGAGCTGAGCAAATGGGATTTGATCTTCCATATTCATGTAGAGCAGGGTCTTGCTCTTCTTGTGCAGGGAAAGTAGTATCAGGGAAGGTGGATCAGTCAGATGGGAGCTACCTTGAGGATGATCAGATGGATGAAGGTTGGGTTTTAACTTGTGTTGCTTACCCGCAGTCAGATGTTGTCATTGAGACACACAAGGAGGAATATCTATTTAGTTAGTTAGTTAAGTCTGCTTCAAGATCTAGTTATTTATCTCCATGAAATGATTCTGGCTTGCCTTCAGGTCCTTAATCAGATGTCTCATGGAGTTTTTTGATCACTTTTCTTAGTTTTACACCAACATTCTAAAACCAATTTAGGTTAGGATTTAAATTGATATATTTGTAAAAATTTTAGATTTAAATTGGTACAATTATTTAGTTTAGGGTTTAGATTGACATAACTTCAAAGTTCAGGGTTTAAATTGATGCACATTATCTTATACGACTCCAAAAATTTAGAGATATAAATTGATATTTGTT ATGACCAGTTCACCAGCACTTTCCAGTGTGACATTGAACACCTCGTTTCTCCAGAAGCAGCCAGCAGCAAGGATAAGGTTGGTGTTGAACTTTGGCCAAGATTTGTTTGGGCTGAAGGGTGGCAGCAGCCGAGGTGGGCGAGTGATTGCAATGGCAGAGTACAACGTGAAGTTGATCACACCAACAGGAGAGACGGAGTTCAAGTGCCCGGATGACGAATACATTCTTGATCGAGCTGAGCAAATGGGATTTGATCTTCCATATTCATGTAGAGCAGGGTCTTGCTCTTCTTGTGCAGGGAAAGTAGTATCAGGGAAGGTGGATCAGTCAGATGGGAGCTACCTTGAGGATGATCAGATGGATGAAGGTTGGGTTTTAACTTGTGTTGCTTACCCGCAGTCAGATGTTGTCATTGAGACACACAAGGAGGAATATCTATTTAGTTAG ATGACCAGTTCACCAGCACTTTCCAGTGTGACATTGAACACCTCGTTTCTCCAGAAGCAGCCAGCAGCAAGGATAAGGTTGGTGTTGAACTTTGGCCAAGATTTGTTTGGGCTGAAGGGTGGCAGCAGCCGAGGTGGGCGAGTGATTGCAATGGCAGAGTACAACGTGAAGTTGATCACACCAACAGGAGAGACGGAGTTCAAGTGCCCGGATGACGAATACATTCTTGATCGAGCTGAGCAAATGGGATTTGATCTTCCATATTCATGTAGAGCAGGGTCTTGCTCTTCTTGTGCAGGGAAAGTAGTATCAGGGAAGGTGGATCAGTCAGATGGGAGCTACCTTGAGGATGATCAGATGGATGAAGGTTGGGTTTTAACTTGTGTTGCTTACCCGCAGTCAGATGTTGTCATTGAGACACACAAGGAGGAATATCTATTTAGTTAG
BLAST of CSPI03G19080.1 vs. Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 2.6e-47 Identity = 92/144 (63.89%), Postives = 107/144 (74.31%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 4.5e-47 Identity = 94/144 (65.28%), Postives = 111/144 (77.08%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 7.7e-47 Identity = 88/142 (61.97%), Postives = 112/142 (78.87%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 2.9e-46 Identity = 93/144 (64.58%), Postives = 111/144 (77.08%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 1.9e-45 Identity = 88/142 (61.97%), Postives = 109/142 (76.76%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. TrEMBL
Match: A0A0A0LAD3_CUCSA (Ferredoxin-2 OS=Cucumis sativus GN=Csa_3G222790 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77 Identity = 145/148 (97.97%), Postives = 145/148 (97.97%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. TrEMBL
Match: F8SPG7_CAMSI (Chloroplast ferredoxin I OS=Camellia sinensis PE=2 SV=1) HSP 1 Score: 211.1 bits (536), Expect = 9.4e-52 Identity = 104/147 (70.75%), Postives = 120/147 (81.63%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. TrEMBL
Match: F6HK77_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00270 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 8.8e-50 Identity = 97/140 (69.29%), Postives = 113/140 (80.71%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. TrEMBL
Match: A0A067L2U1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04972 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 8.8e-50 Identity = 100/144 (69.44%), Postives = 116/144 (80.56%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. TrEMBL
Match: A0A0S3S1Q6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G006400 PE=4 SV=1) HSP 1 Score: 201.8 bits (512), Expect = 5.7e-49 Identity = 102/147 (69.39%), Postives = 116/147 (78.91%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1) HSP 1 Score: 188.7 bits (478), Expect = 2.5e-48 Identity = 94/144 (65.28%), Postives = 111/144 (77.08%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein) HSP 1 Score: 186.0 bits (471), Expect = 1.6e-47 Identity = 93/144 (64.58%), Postives = 111/144 (77.08%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3) HSP 1 Score: 149.8 bits (377), Expect = 1.3e-36 Identity = 72/113 (63.72%), Postives = 89/113 (78.76%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4) HSP 1 Score: 117.9 bits (294), Expect = 5.5e-27 Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. TAIR10
Match: AT4G14890.1 (AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein) HSP 1 Score: 83.2 bits (204), Expect = 1.5e-16 Identity = 45/103 (43.69%), Postives = 58/103 (56.31%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. NCBI nr
Match: gi|449457047|ref|XP_004146260.1| (PREDICTED: ferredoxin-like [Cucumis sativus]) HSP 1 Score: 297.4 bits (760), Expect = 1.4e-77 Identity = 145/148 (97.97%), Postives = 145/148 (97.97%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. NCBI nr
Match: gi|659112076|ref|XP_008456053.1| (PREDICTED: ferredoxin-like [Cucumis melo]) HSP 1 Score: 279.3 bits (713), Expect = 4.0e-72 Identity = 134/148 (90.54%), Postives = 141/148 (95.27%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. NCBI nr
Match: gi|1009124224|ref|XP_015878951.1| (PREDICTED: ferredoxin [Ziziphus jujuba]) HSP 1 Score: 211.8 bits (538), Expect = 7.9e-52 Identity = 101/146 (69.18%), Postives = 119/146 (81.51%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. NCBI nr
Match: gi|338173755|gb|AEI83424.1| (chloroplast ferredoxin I [Camellia sinensis]) HSP 1 Score: 211.1 bits (536), Expect = 1.4e-51 Identity = 104/147 (70.75%), Postives = 120/147 (81.63%), Query Frame = 1
BLAST of CSPI03G19080.1 vs. NCBI nr
Match: gi|1012102262|ref|XP_015957693.1| (PREDICTED: ferredoxin [Arachis duranensis]) HSP 1 Score: 208.8 bits (530), Expect = 6.7e-51 Identity = 104/149 (69.80%), Postives = 122/149 (81.88%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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