CSPI03G18540.1 (mRNA) Wild cucumber (PI 183967)

NameCSPI03G18540.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 14183819 .. 14184960 (+)
Sequence length417
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATATCCTATGTCTAATTTATTCGTTTGTCCTAATAAAAATAGAATGGACAAAAATGGATGCTATCAAATTGCACAAAGTATATTTTCCCTATAAAATCAGGAGCAAAACTTTACCCAACATATTATTATTATTCTATTTTAAAAAGGGTATCAGGAAAATTCCCAAGTTCCAATACTGGCGGAATCCGAGGAATCGCCGCCGTGATCTGTCATCAACGTCGACATCCATTGATCCATTTCATCTTTAGCAATTTTCCCCCATATTTCATCTTCATTCCCGATTCCAATCCCCGCCGAATTGCTACTGTTCCTCGAAATTTCACTTTCCGTCCTCTGTATTTCCCGCTCCGAACTCATCATTCTCAACGAATCATCCGTAAACGGAAAATTAAGCTTCGCTCGCGGCCCTCGGAACTCCAACGCCGCTTTATCATAAGCCCTAGCAGCTTCTTCAGCAGTATTGAACGTCCCTAACCAAACTCTAGTCGCCAGTTTCGGATTTCGGATCTCCGCGGCCCATTTCCCCCAGGGCCGCTGCCGAACGCCTCTATAAGTCTTCTTCGACCGCTTATTTGCAGTCTTCTTCTCGGAGGAAAGCTGGGAGGACGAGGAGGCGGAGGGAGGAAAGAAATTGCATCCTAAACAACCTTGGATTTGACAAACGGTACAAGTTTCGAAAACAGAGGGAGGGAAAATTGGGTGGGTAGTGGAAGAAGTGAAGGAAGAAATGGTTGCAGAGGGGGAGAAGGAGTCGGAATGGAATGAAGGGAGGGGGGTTTGATTTTGGCGCCAAAAGGCATCGGCCATGGAGTAATGGAGATGGGAAGAAGTGCCGGAGACGACAGAGGTCAAGGCAGTGACGATTACAGAGAGCTCTTGATCAGAGGAAATAGAAGGCGGGGGGAGAGAGAAGTGGTAGGAATCGGGGGATTGGGAGGATGGTGATGGTGATGGTGAACGCTTCAGAGAGTTCATGAGAGGAGAGGTAGAGAGAGGGAAGAGGGAAAGGGAGAGATTTAGGGAGTGGGAGTGAAGAGTGAGGTATTTATATGGAGGGGGGTGATGACGGGGCAACAGCAAAATGGGAAATAGGTACGCGGTGGGAAATAAGCACGCGGTGGAGTGGTGTGATATTTC

mRNA sequence

ATGCTATCAAATTGCACAAAGTATATTTTCCCTATAAAATCAGGAGCAAAACTTTACCCAACATATTATTATTATTCTATTTTAAAAAGGGTATCAGGAAAATTCCCAAGTTCCAATACTGGCGGAATCCGAGGAATCGCCGCCGTGATCTGTCATCAACGTCGACATCCATTGATCCATTTCATCTTTAGCAATTTTCCCCCATATTTCATCTTCATTCCCGATTCCAATCCCCGCCGAATTGCTACTGTTCCTCGAAATTTCACTTTCCGTCCTCTGTATTTCCCGCTCCGAACTCATCATTCTCAACGAATCATCCGTAAACGGAAAATTAAGCTTCGCTCGCGGCCCTCGGAACTCCAACGCCGCTTTATCATAAGCCCTAGCAGCTTCTTCAGCAGTATTGAACGTCCCTAA

Coding sequence (CDS)

ATGCTATCAAATTGCACAAAGTATATTTTCCCTATAAAATCAGGAGCAAAACTTTACCCAACATATTATTATTATTCTATTTTAAAAAGGGTATCAGGAAAATTCCCAAGTTCCAATACTGGCGGAATCCGAGGAATCGCCGCCGTGATCTGTCATCAACGTCGACATCCATTGATCCATTTCATCTTTAGCAATTTTCCCCCATATTTCATCTTCATTCCCGATTCCAATCCCCGCCGAATTGCTACTGTTCCTCGAAATTTCACTTTCCGTCCTCTGTATTTCCCGCTCCGAACTCATCATTCTCAACGAATCATCCGTAAACGGAAAATTAAGCTTCGCTCGCGGCCCTCGGAACTCCAACGCCGCTTTATCATAAGCCCTAGCAGCTTCTTCAGCAGTATTGAACGTCCCTAA
BLAST of CSPI03G18540.1 vs. TrEMBL
Match: A0A0A0L729_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207640 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 2.8e-74
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1

Query: 1   MLSNCTKYIFPIKSGAKLYPTYYYYSILKRVSGKFPSSNTGGIRGIAAVICHQRRHPLIH 60
           MLSNCTKYIFPIKSGAKLYPTYYYYSILKRVSGKFPSSNTGGIRGIAAVICHQRRHPLIH
Sbjct: 1   MLSNCTKYIFPIKSGAKLYPTYYYYSILKRVSGKFPSSNTGGIRGIAAVICHQRRHPLIH 60

Query: 61  FIFSNFPPYFIFIPDSNPRRIATVPRNFTFRPLYFPLRTHHSQRIIRKRKIKLRSRPSEL 120
           FIFSNFPPYFIFIPDSNPRRIATVPRNFTFRPLYFPLRTHHSQRIIRKRKIKLRSRPSEL
Sbjct: 61  FIFSNFPPYFIFIPDSNPRRIATVPRNFTFRPLYFPLRTHHSQRIIRKRKIKLRSRPSEL 120

Query: 121 QRRFIISPSSFFSSIERP 139
           QRRFIISPSSFFSSIERP
Sbjct: 121 QRRFIISPSSFFSSIERP 138

BLAST of CSPI03G18540.1 vs. NCBI nr
Match: gi|700202405|gb|KGN57538.1| (hypothetical protein Csa_3G207640 [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 4.0e-74
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1

Query: 1   MLSNCTKYIFPIKSGAKLYPTYYYYSILKRVSGKFPSSNTGGIRGIAAVICHQRRHPLIH 60
           MLSNCTKYIFPIKSGAKLYPTYYYYSILKRVSGKFPSSNTGGIRGIAAVICHQRRHPLIH
Sbjct: 1   MLSNCTKYIFPIKSGAKLYPTYYYYSILKRVSGKFPSSNTGGIRGIAAVICHQRRHPLIH 60

Query: 61  FIFSNFPPYFIFIPDSNPRRIATVPRNFTFRPLYFPLRTHHSQRIIRKRKIKLRSRPSEL 120
           FIFSNFPPYFIFIPDSNPRRIATVPRNFTFRPLYFPLRTHHSQRIIRKRKIKLRSRPSEL
Sbjct: 61  FIFSNFPPYFIFIPDSNPRRIATVPRNFTFRPLYFPLRTHHSQRIIRKRKIKLRSRPSEL 120

Query: 121 QRRFIISPSSFFSSIERP 139
           QRRFIISPSSFFSSIERP
Sbjct: 121 QRRFIISPSSFFSSIERP 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L729_CUCSA2.8e-74100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207640 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700202405|gb|KGN57538.1|4.0e-74100.00hypothetical protein Csa_3G207640 [Cucumis sativus][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G18540CSPI03G18540gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G18540.1CSPI03G18540.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G18540.1.utr5p1CSPI03G18540.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G18540.1.cds1CSPI03G18540.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G18540.1.utr3p1CSPI03G18540.1.utr3p1three_prime_UTR