CSPI03G18540 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G18540
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 14183819 .. 14184960 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATATCCTATGTCTAATTTATTCGTTTGTCCTAATAAAAATAGAATGGACAAAAATGGATGCTATCAAATTGCACAAAGTATATTTTCCCTATAAAATCAGGAGCAAAACTTTACCCAACATATTATTATTATTCTATTTTAAAAAGGGTATCAGGAAAATTCCCAAGTTCCAATACTGGCGGAATCCGAGGAATCGCCGCCGTGATCTGTCATCAACGTCGACATCCATTGATCCATTTCATCTTTAGCAATTTTCCCCCATATTTCATCTTCATTCCCGATTCCAATCCCCGCCGAATTGCTACTGTTCCTCGAAATTTCACTTTCCGTCCTCTGTATTTCCCGCTCCGAACTCATCATTCTCAACGAATCATCCGTAAACGGAAAATTAAGCTTCGCTCGCGGCCCTCGGAACTCCAACGCCGCTTTATCATAAGCCCTAGCAGCTTCTTCAGCAGTATTGAACGTCCCTAACCAAACTCTAGTCGCCAGTTTCGGATTTCGGATCTCCGCGGCCCATTTCCCCCAGGGCCGCTGCCGAACGCCTCTATAAGTCTTCTTCGACCGCTTATTTGCAGTCTTCTTCTCGGAGGAAAGCTGGGAGGACGAGGAGGCGGAGGGAGGAAAGAAATTGCATCCTAAACAACCTTGGATTTGACAAACGGTACAAGTTTCGAAAACAGAGGGAGGGAAAATTGGGTGGGTAGTGGAAGAAGTGAAGGAAGAAATGGTTGCAGAGGGGGAGAAGGAGTCGGAATGGAATGAAGGGAGGGGGGTTTGATTTTGGCGCCAAAAGGCATCGGCCATGGAGTAATGGAGATGGGAAGAAGTGCCGGAGACGACAGAGGTCAAGGCAGTGACGATTACAGAGAGCTCTTGATCAGAGGAAATAGAAGGCGGGGGGAGAGAGAAGTGGTAGGAATCGGGGGATTGGGAGGATGGTGATGGTGATGGTGAACGCTTCAGAGAGTTCATGAGAGGAGAGGTAGAGAGAGGGAAGAGGGAAAGGGAGAGATTTAGGGAGTGGGAGTGAAGAGTGAGGTATTTATATGGAGGGGGGTGATGACGGGGCAACAGCAAAATGGGAAATAGGTACGCGGTGGGAAATAAGCACGCGGTGGAGTGGTGTGATATTTC

mRNA sequence

ATGCTATCAAATTGCACAAAGTATATTTTCCCTATAAAATCAGGAGCAAAACTTTACCCAACATATTATTATTATTCTATTTTAAAAAGGGTATCAGGAAAATTCCCAAGTTCCAATACTGGCGGAATCCGAGGAATCGCCGCCGTGATCTGTCATCAACGTCGACATCCATTGATCCATTTCATCTTTAGCAATTTTCCCCCATATTTCATCTTCATTCCCGATTCCAATCCCCGCCGAATTGCTACTGTTCCTCGAAATTTCACTTTCCGTCCTCTGTATTTCCCGCTCCGAACTCATCATTCTCAACGAATCATCCGTAAACGGAAAATTAAGCTTCGCTCGCGGCCCTCGGAACTCCAACGCCGCTTTATCATAAGCCCTAGCAGCTTCTTCAGCAGTATTGAACGTCCCTAA

Coding sequence (CDS)

ATGCTATCAAATTGCACAAAGTATATTTTCCCTATAAAATCAGGAGCAAAACTTTACCCAACATATTATTATTATTCTATTTTAAAAAGGGTATCAGGAAAATTCCCAAGTTCCAATACTGGCGGAATCCGAGGAATCGCCGCCGTGATCTGTCATCAACGTCGACATCCATTGATCCATTTCATCTTTAGCAATTTTCCCCCATATTTCATCTTCATTCCCGATTCCAATCCCCGCCGAATTGCTACTGTTCCTCGAAATTTCACTTTCCGTCCTCTGTATTTCCCGCTCCGAACTCATCATTCTCAACGAATCATCCGTAAACGGAAAATTAAGCTTCGCTCGCGGCCCTCGGAACTCCAACGCCGCTTTATCATAAGCCCTAGCAGCTTCTTCAGCAGTATTGAACGTCCCTAA
Homology
[Close]
BLAST of CSPI03G18540 vs. TrEMBL
Match: A0A0A0L729_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207640 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 2.8e-74
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

Query: 1   MLSNCTKYIFPIKSGAKLYPTYYYYSILKRVSGKFPSSNTGGIRGIAAVICHQRRHPLIH 60
           MLSNCTKYIFPIKSGAKLYPTYYYYSILKRVSGKFPSSNTGGIRGIAAVICHQRRHPLIH
Sbjct: 1   MLSNCTKYIFPIKSGAKLYPTYYYYSILKRVSGKFPSSNTGGIRGIAAVICHQRRHPLIH 60

Query: 61  FIFSNFPPYFIFIPDSNPRRIATVPRNFTFRPLYFPLRTHHSQRIIRKRKIKLRSRPSEL 120
           FIFSNFPPYFIFIPDSNPRRIATVPRNFTFRPLYFPLRTHHSQRIIRKRKIKLRSRPSEL
Sbjct: 61  FIFSNFPPYFIFIPDSNPRRIATVPRNFTFRPLYFPLRTHHSQRIIRKRKIKLRSRPSEL 120

Query: 121 QRRFIISPSSFFSSIERP 139
           QRRFIISPSSFFSSIERP
Sbjct: 121 QRRFIISPSSFFSSIERP 138

[Close]
BLAST of CSPI03G18540 vs. NCBI nr
Match: gi|700202405|gb|KGN57538.1| (hypothetical protein Csa_3G207640 [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 4.0e-74
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

Query: 1   MLSNCTKYIFPIKSGAKLYPTYYYYSILKRVSGKFPSSNTGGIRGIAAVICHQRRHPLIH 60
           MLSNCTKYIFPIKSGAKLYPTYYYYSILKRVSGKFPSSNTGGIRGIAAVICHQRRHPLIH
Sbjct: 1   MLSNCTKYIFPIKSGAKLYPTYYYYSILKRVSGKFPSSNTGGIRGIAAVICHQRRHPLIH 60

Query: 61  FIFSNFPPYFIFIPDSNPRRIATVPRNFTFRPLYFPLRTHHSQRIIRKRKIKLRSRPSEL 120
           FIFSNFPPYFIFIPDSNPRRIATVPRNFTFRPLYFPLRTHHSQRIIRKRKIKLRSRPSEL
Sbjct: 61  FIFSNFPPYFIFIPDSNPRRIATVPRNFTFRPLYFPLRTHHSQRIIRKRKIKLRSRPSEL 120

Query: 121 QRRFIISPSSFFSSIERP 139
           QRRFIISPSSFFSSIERP
Sbjct: 121 QRRFIISPSSFFSSIERP 138

The following BLAST results are available for this feature:
BLAST of CSPI03G18540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G18540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L729_CUCSA2.8e-74100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207640 PE=4 SV=1[more]
BLAST of CSPI03G18540 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G18540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202405|gb|KGN57538.1|4.0e-74100.00hypothetical protein Csa_3G207640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G18540.1CSPI03G18540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G18540Wax gourdcpiwgoB283
CSPI03G18540Wild cucumber (PI 183967)cpicpiB144
CSPI03G18540Cucumber (Gy14) v1cgycpiB333
CSPI03G18540Cucumber (Gy14) v1cgycpiB366
CSPI03G18540Cucurbita maxima (Rimu)cmacpiB125
CSPI03G18540Cucurbita maxima (Rimu)cmacpiB326
CSPI03G18540Cucurbita maxima (Rimu)cmacpiB520
CSPI03G18540Cucurbita maxima (Rimu)cmacpiB705
CSPI03G18540Cucurbita moschata (Rifu)cmocpiB120
CSPI03G18540Cucurbita moschata (Rifu)cmocpiB315
CSPI03G18540Cucurbita moschata (Rifu)cmocpiB510
CSPI03G18540Cucurbita moschata (Rifu)cmocpiB698
CSPI03G18540Cucumber (Chinese Long) v2cpicuB120
CSPI03G18540Cucumber (Chinese Long) v2cpicuB165
CSPI03G18540Melon (DHL92) v3.5.1cpimeB241
CSPI03G18540Watermelon (Charleston Gray)cpiwcgB217
CSPI03G18540Watermelon (Charleston Gray)cpiwcgB237
CSPI03G18540Watermelon (97103) v1cpiwmB242
CSPI03G18540Watermelon (97103) v1cpiwmB271
CSPI03G18540Cucurbita pepo (Zucchini)cpecpiB208
CSPI03G18540Cucurbita pepo (Zucchini)cpecpiB388
CSPI03G18540Bottle gourd (USVL1VR-Ls)cpilsiB188
CSPI03G18540Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G18540Melon (DHL92) v3.6.1cpimedB239
CSPI03G18540Cucumber (Gy14) v2cgybcpiB110
CSPI03G18540Cucumber (Gy14) v2cgybcpiB315
CSPI03G18540Silver-seed gourdcarcpiB0405
CSPI03G18540Silver-seed gourdcarcpiB0685
CSPI03G18540Cucumber (Chinese Long) v3cpicucB193
CSPI03G18540Cucumber (Chinese Long) v3cpicucB144
CSPI03G18540Watermelon (97103) v2cpiwmbB203
CSPI03G18540Watermelon (97103) v2cpiwmbB221