CSPI03G07980.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G07980.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Non-specific lipid-transfer protein
Location	Chr3 : 6842852 .. 6843268 (+)
Sequence length	363

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAGCTCAAAACATAAACACCCACCAAGTGTTTGTAAACTTTTCCAAGTAAGAAATGTCGGGAATCTTCAATATTCGGTCCCTAGCCTTCGTGGCCGTGTTTACATGCTCGCTGATGGTGGTTCTGTCTCAGAATGAGGATCTGGAAAGTTGTGTACCGGTGGCACAGGCGCTAGCACCATGTTTGGGGTTCATCAAAGGCAACGGCAAACCATCGGCGTCGTGCTGCAGTGGCGTTAAACAGTTGGCGCGAGATACTAAAACGAAGAAAGATAAAGTTGCACTGTGCGAATGCGTCAAGAAGAGTTTGTCAGTGATCGGAACTTATGATCCGAGTCGCATCCCTTTGATTCCAAAACAATGTGGAGTTTCCGTCCAAATTCCTCCCATAAAAAATTCCACTGACTGCTCAAAGTAA

mRNA sequence

ATGTCGGGAATCTTCAATATTCGGTCCCTAGCCTTCGTGGCCGTGTTTACATGCTCGCTGATGGTGGTTCTGTCTCAGAATGAGGATCTGGAAAGTTGTGTACCGGTGGCACAGGCGCTAGCACCATGTTTGGGGTTCATCAAAGGCAACGGCAAACCATCGGCGTCGTGCTGCAGTGGCGTTAAACAGTTGGCGCGAGATACTAAAACGAAGAAAGATAAAGTTGCACTGTGCGAATGCGTCAAGAAGAGTTTGTCAGTGATCGGAACTTATGATCCGAGTCGCATCCCTTTGATTCCAAAACAATGTGGAGTTTCCGTCCAAATTCCTCCCATAAAAAATTCCACTGACTGCTCAAAGTAA

Coding sequence (CDS)

ATGTCGGGAATCTTCAATATTCGGTCCCTAGCCTTCGTGGCCGTGTTTACATGCTCGCTGATGGTGGTTCTGTCTCAGAATGAGGATCTGGAAAGTTGTGTACCGGTGGCACAGGCGCTAGCACCATGTTTGGGGTTCATCAAAGGCAACGGCAAACCATCGGCGTCGTGCTGCAGTGGCGTTAAACAGTTGGCGCGAGATACTAAAACGAAGAAAGATAAAGTTGCACTGTGCGAATGCGTCAAGAAGAGTTTGTCAGTGATCGGAACTTATGATCCGAGTCGCATCCCTTTGATTCCAAAACAATGTGGAGTTTCCGTCCAAATTCCTCCCATAAAAAATTCCACTGACTGCTCAAAGTAA

Homology

[Close]

BLAST of CSPI03G07980.1 vs. Swiss-Prot
Match: NLTP6_AMBAR (Non-specific lipid-transfer protein OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.4e-16
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1


Query: 32  SCVPVAQALAPCLGFIKGNGKPSASCCSGVKQLARDTKTKKDKVALCECVKKSLSVIGTY 91
           +C  V   LAPC GF+ G  +PS +CC+GV  L    KTK D+VA+C C+K+    I  Y
Sbjct: 29  TCDTVQNILAPCAGFLTGQ-EPSKACCTGVNNLNNSRKTKADRVAVCNCIKELTKSIA-Y 88

Query: 92  DPSRIPLIPKQCGVSVQIPPIKNSTDCSK 121
           DP R+PL+  +CGV    P +  + DCSK
Sbjct: 89  DPKRMPLLSTKCGVKPDFPAVDKNLDCSK 115

[Close]

BLAST of CSPI03G07980.1 vs. Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-14
Identity = 45/112 (40.18%), Postives = 65/112 (58.04%), Query Frame = 1


Query: 10  LAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNG-KPSASCCSGVKQLARDT 69
           L  VA+    L+V     +   SC  V+ AL+PC+ + +GNG KP  +CCSGVK+LA   
Sbjct: 9   LVLVAMVAAMLLVA---TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAA 68

Query: 70  KTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 121
           ++  DK A C C+K   + I   +  ++  +P +CGVSV   PI  STDC+K
Sbjct: 69  QSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPF-PISMSTDCNK 116

[Close]

BLAST of CSPI03G07980.1 vs. Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-14
Identity = 50/112 (44.64%), Postives = 63/112 (56.25%), Query Frame = 1


Query: 10  LAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNG-KPSASCCSGVKQLARDT 69
           LA VA+    L+V     +   +C  V+ AL PC  + KG+G  PSA CCSGVK+LA   
Sbjct: 9   LALVALVAAMLLVAA---DAAITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLA 68

Query: 70  KTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 121
           ++  DK A C C+K   SV G Y+  R   IP +CGVSV    I  S DCSK
Sbjct: 69  RSTADKQATCRCLK---SVAGAYNAGRAAGIPSRCGVSVPY-TISASVDCSK 113

[Close]

BLAST of CSPI03G07980.1 vs. Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.1e-14
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 8   RSLAFVAVFTCSLMVVLSQNEDLE-SCVPVAQALAPCLGFIKGNGK-PSASCCSGVKQLA 67
           + LA VA    +L+++ +   +   SC  VA A+APC+ + +G G  PSA CCSGV+ L 
Sbjct: 5   QQLAVVATAVVALVLLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLN 64

Query: 68  RDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 121
              +T  D+ A C C+K + + +   +      IP +CGVS+    I  STDCS+
Sbjct: 65  NAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPY-TISTSTDCSR 118

[Close]

BLAST of CSPI03G07980.1 vs. Swiss-Prot
Match: NLT21_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-13
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 1


Query: 31  ESCVPVAQALAPCLGFIKGNGK-PSASCCSGVKQLARDTKTKKDKVALCECVKKSLSVIG 90
           E+C  V Q + PCL F+KG  K PS  CCSG K+L+ + KT + K   C+C+ ++   I 
Sbjct: 33  EACGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGIS 92

Query: 91  TYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 121
                 +  +PK+C +   +PPI    DCSK
Sbjct: 93  GIKNELVAEVPKKCDIKTTLPPITADFDCSK 123

[Close]

BLAST of CSPI03G07980.1 vs. TrEMBL
Match: A0A0A0L5X1_CUCSA (Non-specific lipid-transfer protein OS=Cucumis sativus GN=Csa_3G119620 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.1e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MSGIFNIRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNGKPSASCCSG 60
           MSGIFNIRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNGKPSASCCSG
Sbjct: 1   MSGIFNIRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNGKPSASCCSG 60

Query: 61  VKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 120
           VKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK
Sbjct: 61  VKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 120

[Close]

BLAST of CSPI03G07980.1 vs. TrEMBL
Match: A0A061DSH8_THECC (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative OS=Theobroma cacao GN=TCM_005159 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.8e-23
Identity = 52/117 (44.44%), Postives = 75/117 (64.10%), Query Frame = 1


Query: 6   NIRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNG--KPSASCCSGVKQ 65
           +I  LA + +   S +     +    SC  V +A+APCL F+KG G   PS +CC G + 
Sbjct: 4   SINFLAMLVLLMLSALATAETSLLAPSCADVTKAVAPCLNFLKGKGGADPSQACCDGARD 63

Query: 66  LARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 121
           LA++ +TK D+ A+CEC+K +L  +G+YD SR+PLI K+C V + IPPI + TDCSK
Sbjct: 64  LAKEARTKNDRQAICECLKTALGKVGSYDASRVPLIAKKCNVDINIPPINDKTDCSK 120

[Close]

BLAST of CSPI03G07980.1 vs. TrEMBL
Match: M5XSP9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023612mg PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.1e-21
Identity = 51/115 (44.35%), Postives = 77/115 (66.96%), Query Frame = 1


Query: 8   RSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNG--KPSASCCSGVKQLA 67
           R + F+AV    L+ + S      SC  V Q +APCL F+KG    KPS  CC GVK+L+
Sbjct: 3   RLIGFLAV----LLFLSSSANSAPSCPTVTQQVAPCLSFVKGGSDTKPSEECCKGVKELS 62

Query: 68  RDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 121
            +  ++ D+ A+C+C+K+ LS +G Y+PS++ L+PK+CG+S+ +PPI  +TDCSK
Sbjct: 63  VNANSRPDREAVCKCLKQVLSSVGNYNPSQVSLLPKKCGLSLNLPPIDKNTDCSK 113

[Close]

BLAST of CSPI03G07980.1 vs. TrEMBL
Match: A0A151TY04_CAJCA (Non-specific lipid-transfer protein OS=Cajanus cajan GN=KK1_011210 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 49/116 (42.24%), Postives = 80/116 (68.97%), Query Frame = 1


Query: 8   RSLAFVAVFTCSLMVVLSQNEDLES--CVPVAQALAPCLGFIK-GNGKPSASCCSGVKQL 67
           R+  F+A     +++++++ E L S  C  V + +APC  F++    KPS +CCSGVK++
Sbjct: 5   RTATFLAGLLSIVILIITRCEALASVPCSTVIEEVAPCTSFLQESTKKPSQACCSGVKKV 64

Query: 68  ARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 121
           + +  TKKD+  +C+C+K+ L+++G YDP+ IP +PK CG+SV++PPI   TDCSK
Sbjct: 65  SGEGVTKKDRADICQCLKEGLALVGNYDPNLIPQLPKACGLSVKLPPIDKKTDCSK 120

[Close]

BLAST of CSPI03G07980.1 vs. TrEMBL
Match: A0A0B2RU93_GLYSO (Non-specific lipid-transfer protein OS=Glycine soja GN=glysoja_029007 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 41/90 (45.56%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 32  SCVPVAQALAPCLGFIKGNG-KPSASCCSGVKQLARDTKTKKDKVALCECVKKSLSVIGT 91
           SC  V + +APC  F++G   +PS +CC+G+K+L+ +  T +++ A+C+C+K+ L+ IG 
Sbjct: 24  SCATVIEEVAPCTSFLQGGSKQPSVACCNGIKKLSGEAGTHQNRTAICQCLKEGLASIGN 83

Query: 92  YDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 121
           YDP R+P +PK CG+S  +PPI  +TDCSK
Sbjct: 84  YDPKRVPQVPKDCGLSATLPPIDKNTDCSK 113

[Close]

BLAST of CSPI03G07980.1 vs. TAIR10
Match: AT2G18370.1 (AT2G18370.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 36/114 (31.58%), Postives = 57/114 (50.00%), Query Frame = 1


Query: 7   IRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFI-KGNGKPSASCCSGVKQLA 66
           ++ LA ++V    +  +   +E   SC  V Q L PC+ ++  G+G P  +CC GVK LA
Sbjct: 4   LKCLAIISVL--GIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLA 63

Query: 67  RDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCS 120
             T T  DK A C+C+K   + + T  P     +   CG S+ +     + DC+
Sbjct: 64  AATTTSADKKAACQCIKSVANSV-TVKPELAQALASNCGASLPV-DASPTVDCT 113

[Close]

BLAST of CSPI03G07980.1 vs. TAIR10
Match: AT5G01870.1 (AT5G01870.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07
Identity = 31/93 (33.33%), Postives = 48/93 (51.61%), Query Frame = 1


Query: 32  SCVPVAQALAPCLGFIKGNGKPSASCCSGVKQLARDTKTKKDKVALCECVKKSLSVIGTY 91
           SC  V   L PC+ ++   G    SCC+G++ L++   +  DK  +C C+K   SV+G  
Sbjct: 25  SCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIK---SVVGRV 84

Query: 92  DPSRIPL-----IPKQCGVSVQIPPIKNSTDCS 120
             S I L     +P +CGV +    I  ST+C+
Sbjct: 85  SYSSIYLKKAAALPGKCGVKLPY-KIDPSTNCN 113

[Close]

BLAST of CSPI03G07980.1 vs. TAIR10
Match: AT3G51600.1 (AT3G51600.1 lipid transfer protein 5)

HSP 1 Score: 52.0 bits (123), Expect = 3.0e-07
Identity = 32/120 (26.67%), Postives = 55/120 (45.83%), Query Frame = 1


Query: 1   MSGIFNIRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNGKPSASCCSG 60
           M G+  + +L  V    C L+     +E   SC  V  +L  C  ++   G     CCSG
Sbjct: 1   MEGLLKLSTLVIV----CMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGGFIPRGCCSG 60

Query: 61  VKQLARDTKTKKDKVALCECVKKSLSVIGT-YDPSRIPLIPKQCGVSVQIPPIKNSTDCS 120
           V++L    +T +D+   C C++ +   +G+  +  R   +P  C V +   PI   T+C+
Sbjct: 61  VQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISY-PISARTNCN 115

[Close]

BLAST of CSPI03G07980.1 vs. TAIR10
Match: AT3G08770.2 (AT3G08770.2 lipid transfer protein 6)

HSP 1 Score: 52.0 bits (123), Expect = 3.0e-07
Identity = 31/102 (30.39%), Postives = 47/102 (46.08%), Query Frame = 1


Query: 20  LMVVLSQNEDLESCVPVAQALAPCLGFIKGNGKPSASCCSGVKQLARDTKTKKDKVALCE 79
           L++ L   E   SC  V   L PCL ++   G     CC+G+  L    +T  D+  +C 
Sbjct: 10  LVLALHCGEAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCR 69

Query: 80  CVKKSLSVIGTYDPSRIP---LIPKQCGVSVQIPPIKNSTDC 119
           C+K ++  + T  P  I     +P +CGV +       STDC
Sbjct: 70  CIKSAIGGL-TLSPRTIQNALELPSKCGVDLPY-KFSPSTDC 109

[Close]

BLAST of CSPI03G07980.1 vs. TAIR10
Match: AT2G15325.1 (AT2G15325.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.5e-06
Identity = 34/114 (29.82%), Postives = 54/114 (47.37%), Query Frame = 1


Query: 9   SLAFVAVFTCSLMVV-LSQNEDLESCVPVAQALAPCLGFIKG--NGKPSASCCSGVKQLA 68
           S+AFV   T  +  + +     L  C      L PCL ++      KPS  CCSG+ ++ 
Sbjct: 6   SIAFVIAITIFMSHLNVFTVYSLTPCEEATNLLTPCLRYLWAPPEAKPSPECCSGLDKVN 65

Query: 69  RDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCS 120
           +  KT  D+  +C C+  S + I + D  +   +PK C V++   P+    DCS
Sbjct: 66  KGVKTYDDRHDMCICL-SSEAAITSADQYKFDNLPKLCNVAL-FAPVGPKFDCS 117

[Close]

BLAST of CSPI03G07980.1 vs. NCBI nr
Match: gi|700201296|gb|KGN56429.1| (hypothetical protein Csa_3G119620 [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 5.8e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MSGIFNIRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNGKPSASCCSG 60
           MSGIFNIRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNGKPSASCCSG
Sbjct: 1   MSGIFNIRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNGKPSASCCSG 60

Query: 61  VKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 120
           VKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK
Sbjct: 61  VKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 120

[Close]

BLAST of CSPI03G07980.1 vs. NCBI nr
Match: gi|778676915|ref|XP_004134304.2| (PREDICTED: non-specific lipid-transfer protein Cw18-like [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 5.8e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MSGIFNIRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNGKPSASCCSG 60
           MSGIFNIRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNGKPSASCCSG
Sbjct: 1   MSGIFNIRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNGKPSASCCSG 60

Query: 61  VKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 120
           VKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK
Sbjct: 61  VKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 120

[Close]

BLAST of CSPI03G07980.1 vs. NCBI nr
Match: gi|659074983|ref|XP_008437901.1| (PREDICTED: non-specific lipid-transfer protein 3-like [Cucumis melo])

HSP 1 Score: 214.9 bits (546), Expect = 7.6e-53
Identity = 102/120 (85.00%), Postives = 114/120 (95.00%), Query Frame = 1


Query: 1   MSGIFNIRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNGKPSASCCSG 60
           MSG+FN RSLAFVAV TCSLMVVLSQ ED+ESCVPVAQ+L+PCLGFIKG+GKPSASCCSG
Sbjct: 1   MSGVFNFRSLAFVAVLTCSLMVVLSQTEDVESCVPVAQSLSPCLGFIKGSGKPSASCCSG 60

Query: 61  VKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 120
           VKQLA +TKTKKDKVALCEC+KKSL++IG YDP+RIPLIPKQCG+SVQIPPI NST+CSK
Sbjct: 61  VKQLAGNTKTKKDKVALCECIKKSLAMIGPYDPTRIPLIPKQCGISVQIPPINNSTNCSK 120

[Close]

BLAST of CSPI03G07980.1 vs. NCBI nr
Match: gi|590721283|ref|XP_007051567.1| (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-22
Identity = 52/117 (44.44%), Postives = 75/117 (64.10%), Query Frame = 1


Query: 6   NIRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNG--KPSASCCSGVKQ 65
           +I  LA + +   S +     +    SC  V +A+APCL F+KG G   PS +CC G + 
Sbjct: 4   SINFLAMLVLLMLSALATAETSLLAPSCADVTKAVAPCLNFLKGKGGADPSQACCDGARD 63

Query: 66  LARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 121
           LA++ +TK D+ A+CEC+K +L  +G+YD SR+PLI K+C V + IPPI + TDCSK
Sbjct: 64  LAKEARTKNDRQAICECLKTALGKVGSYDASRVPLIAKKCNVDINIPPINDKTDCSK 120

[Close]

BLAST of CSPI03G07980.1 vs. NCBI nr
Match: gi|470141935|ref|XP_004306679.1| (PREDICTED: probable non-specific lipid-transfer protein 2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 112.5 bits (280), Expect = 5.3e-22
Identity = 50/103 (48.54%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 19  SLMVVLSQNEDLESCVPVAQALAPCLGFIKGNGK-PSASCCSGVKQLARDTKTKKDKVAL 78
           ++++ +S      +C  V + LAPCL F+KG+ K PS +CCSG K+L+ + +T KDK A+
Sbjct: 9   AILLFVSAAHSAPTCPVVTKKLAPCLPFVKGSSKDPSPACCSGAKELSNNVQTSKDKQAV 68

Query: 79  CECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 121
           C C+KK+LS IG Y PS++ LIPK+CG+ + +PPI   TDCSK
Sbjct: 69  CMCLKKTLSTIGDYQPSKLSLIPKKCGLKLVLPPIDKKTDCSK 111

The following BLAST results are available for this feature:

BLAST of CSPI03G07980.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NLTP6_AMBAR	4.4e-16	44.94	Non-specific lipid-transfer protein OS=Ambrosia artemisiifolia PE=1 SV=1	[more]
NLTP3_HORVU	1.8e-14	40.18	Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1	[more]
NLTP8_HORVU	4.1e-14	44.64	Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1	[more]
NLTP_MAIZE	9.1e-14	36.52	Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1	[more]
NLT21_PARJU	2.6e-13	38.46	Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1	[more]

BLAST of CSPI03G07980.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5X1_CUCSA	4.1e-61	100.00	Non-specific lipid-transfer protein OS=Cucumis sativus GN=Csa_3G119620 PE=3 SV=1	[more]
A0A061DSH8_THECC	9.8e-23	44.44	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
M5XSP9_PRUPE	3.1e-21	44.35	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023612mg PE=3 SV=1	[more]
A0A151TY04_CAJCA	2.0e-20	42.24	Non-specific lipid-transfer protein OS=Cajanus cajan GN=KK1_011210 PE=3 SV=1	[more]
A0A0B2RU93_GLYSO	1.7e-19	45.56	Non-specific lipid-transfer protein OS=Glycine soja GN=glysoja_029007 PE=3 SV=1	[more]

BLAST of CSPI03G07980.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G18370.1	1.7e-10	31.58	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G01870.1	1.8e-07	33.33	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT3G51600.1	3.0e-07	26.67	lipid transfer protein 5	[more]
AT3G08770.2	3.0e-07	30.39	lipid transfer protein 6	[more]
AT2G15325.1	2.5e-06	29.82	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of CSPI03G07980.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201296\|gb\|KGN56429.1\|	5.8e-61	100.00	hypothetical protein Csa_3G119620 [Cucumis sativus]	[more]
gi\|778676915\|ref\|XP_004134304.2\|	5.8e-61	100.00	PREDICTED: non-specific lipid-transfer protein Cw18-like [Cucumis sativus]	[more]
gi\|659074983\|ref\|XP_008437901.1\|	7.6e-53	85.00	PREDICTED: non-specific lipid-transfer protein 3-like [Cucumis melo]	[more]
gi\|590721283\|ref\|XP_007051567.1\|	1.4e-22	44.44	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
gi\|470141935\|ref\|XP_004306679.1\|	5.3e-22	48.54	PREDICTED: probable non-specific lipid-transfer protein 2 [Fragaria vesca subsp....	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000528	Plant_LTP
IPR016140	Bifunc_inhib/LTP/seed_store

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008289	lipid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G07980	CSPI03G07980	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G07980.1	CSPI03G07980.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G07980.1.utr5p1	CSPI03G07980.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G07980.1.cds1	CSPI03G07980.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant lipid transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 73..88 score: 5.0E-17coord: 90..107 score: 5.0E-17coord: 109..120 score: 5.0E-17coord: 32..48 score: 5.0E-17coord: 52..66 score: 5.0
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 31..116 score: 6.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 33..118 score: 8.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 32..119 score: 2.27
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 32..120 score: 8.2
None	No IPR available	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 1..119 score: 1.0
None	No IPR available	PANTHER	PTHR33076:SF9	SUBFAMILY NOT NAMED	coord: 1..119 score: 1.0