CSPI02G27600.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G27600.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Location	Chr2 : 23659647 .. 23660104 (-)
Sequence length	309

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTTTCTGAGAGCTTCAATGGTGTCAAAGAGAGAGAATTATTATCCCTTCAAAAGAGTGCCAAAAGTGGCTTCATGTTCTTGACTAGAGGCGCTCTGCCCATGCTGCCATTATGGAAGAGGTTCTTTGCTGACCATGACAAACTGTTCTCTATCCATGTGCATGCCCTTCCAGGCTATGAGCTAAATCTGTCCACGAGTTCTGTTTTCTACAGACGGGCAGATCCCCAGTCAGGTATTTCTTTTTCTTTCTTCAATCTGTTTGGTATTGATATTGTACCATGTTGAGTGTGAACACAAGTGGACATTACCTATTGATAGAAACATGTGTGAAGGAGTGATTTGTGAGGTCCACATTTTCTTTCACTTGTTTTTGTTTTGTAGCTATAGAGGTACTCCACATGGGCAGTAACAAGAACTCAATTAGAAAGTCATGCAACACTTGGAGACCTTAA

mRNA sequence

ATGAGCTTTTCTGAGAGCTTCAATGGTGTCAAAGAGAGAGAATTATTATCCCTTCAAAAGAGTGCCAAAAGTGGCTTCATGTTCTTGACTAGAGGCGCTCTGCCCATGCTGCCATTATGGAAGAGGTTCTTTGCTGACCATGACAAACTGTTCTCTATCCATGTGCATGCCCTTCCAGGCTATGAGCTAAATCTGTCCACGAGTTCTGTTTTCTACAGACGGGCAGATCCCCAGTCAGCTATAGAGGTACTCCACATGGGCAGTAACAAGAACTCAATTAGAAAGTCATGCAACACTTGGAGACCTTAA

Coding sequence (CDS)

ATGAGCTTTTCTGAGAGCTTCAATGGTGTCAAAGAGAGAGAATTATTATCCCTTCAAAAGAGTGCCAAAAGTGGCTTCATGTTCTTGACTAGAGGCGCTCTGCCCATGCTGCCATTATGGAAGAGGTTCTTTGCTGACCATGACAAACTGTTCTCTATCCATGTGCATGCCCTTCCAGGCTATGAGCTAAATCTGTCCACGAGTTCTGTTTTCTACAGACGGGCAGATCCCCAGTCAGCTATAGAGGTACTCCACATGGGCAGTAACAAGAACTCAATTAGAAAGTCATGCAACACTTGGAGACCTTAA

Homology

[Close]

BLAST of CSPI02G27600.1 vs. TrEMBL
Match: A0A0A0LNA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G435490 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 9.4e-51
Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 1


Query: 1   MSFSESFNGVKERELLSLQKSAKSGFMFLTRGALPMLPLWKRFFADHDKLFSIHVHALPG 60
           MSFSESFNGVKERELLSLQKSAKSGFMFLTRG LPMLPLWKRFFADHDKLFSIHVHALPG
Sbjct: 6   MSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPG 65

Query: 61  YELNLSTSSVFYRRADPQSAIEVLHMGSNKNSIRKSCNTWRP 103
           YELNLSTSSVFYRRADPQSAIEVLHM SNKNSIRKSCNTWRP
Sbjct: 66  YELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP 107

[Close]

BLAST of CSPI02G27600.1 vs. TrEMBL
Match: A0A0A0L2Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110720 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.0e-18
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1


Query: 19  QKSAKSGFMFLTRGALPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQ 78
           ++  K  FMFLTRG LPMLPLW+RFFA H+KLFSI+VHALPGY+LN+STSSVFYRR  P 
Sbjct: 121 ERVPKVAFMFLTRGPLPMLPLWERFFAGHEKLFSIYVHALPGYKLNVSTSSVFYRRQIPS 180

Query: 79  SAI 82
             +
Sbjct: 181 QRV 183

[Close]

BLAST of CSPI02G27600.1 vs. TrEMBL
Match: W9RJ51_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010966 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-15
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 1


Query: 10  VKERELLSLQKSAKSGFMFLTRGALPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 69
           V ++E    ++  K  FMFLTRGALP+LPLW+R F  H+KLFSI+VHALPGY+LN+ST+S
Sbjct: 113 VPQKEEYPYKRVPKVAFMFLTRGALPLLPLWERLFRGHEKLFSIYVHALPGYKLNVSTTS 172

Query: 70  VFYRRADPQSAI 82
            F+RR  P   +
Sbjct: 173 PFHRREIPSQHV 184

[Close]

BLAST of CSPI02G27600.1 vs. TrEMBL
Match: F6HK07_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g01710 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-14
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 10  VKERELLSLQKSAKSGFMFLTRGALPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 69
           V  R     ++  K  FMFLTRG LP++PLW+RFF  H K FS++VHALPG+ELN+S  S
Sbjct: 94  VPRRAEYPFKRVPKVAFMFLTRGPLPLMPLWERFFEGHRKYFSVYVHALPGFELNVSMHS 153

Query: 70  VFYRRADPQSAIE 83
            FY+R  P  ++E
Sbjct: 154 AFYKRQIPSKSVE 166

[Close]

BLAST of CSPI02G27600.1 vs. TrEMBL
Match: V4T5B9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001419mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.4e-14
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 10  VKERELLSLQKSAKSGFMFLTRGALPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 69
           V  +E    +++ +  FMFLTRG LP+LPLW+RFF  H+K FSI+VHALPGY+LN+S+ S
Sbjct: 110 VPYKEEYPFERTPRVAFMFLTRGPLPLLPLWERFFKGHEKYFSIYVHALPGYKLNVSSDS 169

Query: 70  VFYRRADP 78
            FY R  P
Sbjct: 170 PFYGRQIP 177

[Close]

BLAST of CSPI02G27600.1 vs. TAIR10
Match: AT1G10280.1 (AT1G10280.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-14
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 10  VKERELLSLQKSAKSGFMFLTRGALPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSS 69
           V  +E     +  K  FMFLTRG LPMLPLW++FF  ++K  S++VH  PGY++N+S  S
Sbjct: 130 VPVKEEYPYDRVPKVAFMFLTRGPLPMLPLWEKFFKGNEKYLSVYVHTPPGYDMNVSRDS 189

Query: 70  VFYRRADPQSAIE 83
            FY R  P   +E
Sbjct: 190 PFYDRQIPSQRVE 202

[Close]

BLAST of CSPI02G27600.1 vs. TAIR10
Match: AT3G21310.1 (AT3G21310.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-13
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 23  KSGFMFLTRGALPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSAI 82
           K  FMFLT+G LP  PLW+RFF  H+  +SI+VH LP Y  +  +SSVFYRR  P   +
Sbjct: 115 KMAFMFLTKGPLPFAPLWERFFKGHEGFYSIYVHTLPNYRSDFPSSSVFYRRQIPSQHV 173

[Close]

BLAST of CSPI02G27600.1 vs. TAIR10
Match: AT1G51770.1 (AT1G51770.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 72.0 bits (175), Expect = 2.4e-13
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 12  ERELLSLQKSAKSGFMFLTRGALPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVF 71
           +R     ++  K  FMFL +G LP  PLW++F   H+ L+SI+VH+LP Y+ + S SSVF
Sbjct: 113 QRNGYPFRRVPKLAFMFLAKGPLPFAPLWEKFCKGHEGLYSIYVHSLPSYKSDFSRSSVF 172

Query: 72  YRRADPQSAI 82
           YRR  P  A+
Sbjct: 173 YRRYIPSQAV 182

[Close]

BLAST of CSPI02G27600.1 vs. TAIR10
Match: AT1G10880.1 (AT1G10880.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-10
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 23  KSGFMFLTRGALPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSAIE 82
           K  FMFLTR  LP+ PLW+ FF  H+  +SI+VH  P +      SSVFY++  P  A+E
Sbjct: 118 KVAFMFLTRWNLPLSPLWEMFFKGHEGFYSIYVHTSPEFTQEPPESSVFYKKRIPSKAVE 177

[Close]

BLAST of CSPI02G27600.1 vs. TAIR10
Match: AT1G68380.1 (AT1G68380.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-10
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 23  KSGFMFLTRGALPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQSAIE 82
           K  FMFLT G LP+ PLW+RFF  H+ LF+I+VH    Y+  +   SVFY R  P   ++
Sbjct: 124 KVAFMFLTWGPLPLAPLWERFFRGHEGLFTIYVHTNSSYDEFMPQDSVFYGRRIPSKRVD 183

[Close]

BLAST of CSPI02G27600.1 vs. NCBI nr
Match: gi|700208266|gb|KGN63385.1| (hypothetical protein Csa_2G435490 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 1.4e-50
Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 1


Query: 1   MSFSESFNGVKERELLSLQKSAKSGFMFLTRGALPMLPLWKRFFADHDKLFSIHVHALPG 60
           MSFSESFNGVKERELLSLQKSAKSGFMFLTRG LPMLPLWKRFFADHDKLFSIHVHALPG
Sbjct: 6   MSFSESFNGVKERELLSLQKSAKSGFMFLTRGPLPMLPLWKRFFADHDKLFSIHVHALPG 65

Query: 61  YELNLSTSSVFYRRADPQSAIEVLHMGSNKNSIRKSCNTWRP 103
           YELNLSTSSVFYRRADPQSAIEVLHM SNKNSIRKSCNTWRP
Sbjct: 66  YELNLSTSSVFYRRADPQSAIEVLHMDSNKNSIRKSCNTWRP 107

[Close]

BLAST of CSPI02G27600.1 vs. NCBI nr
Match: gi|659102622|ref|XP_008452226.1| (PREDICTED: uncharacterized protein LOC103493307 isoform X2 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 5.2e-18
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 1


Query: 11  KERELLSLQKSAKSGFMFLTRGALPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSV 70
           K       ++  K  FMFLTRG LPMLPLW+RFFA HD LFSI+VHALPGYELN+STSSV
Sbjct: 108 KRENYYPFKRVPKVAFMFLTRGPLPMLPLWERFFAGHDNLFSIYVHALPGYELNVSTSSV 167

Query: 71  FYRRADPQSAI 82
           FYRR  P   +
Sbjct: 168 FYRRQIPSQRV 178

[Close]

BLAST of CSPI02G27600.1 vs. NCBI nr
Match: gi|659102620|ref|XP_008452225.1| (PREDICTED: uncharacterized protein LOC103493307 isoform X1 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 5.2e-18
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 1


Query: 11  KERELLSLQKSAKSGFMFLTRGALPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSV 70
           K       ++  K  FMFLTRG LPMLPLW+RFFA HD LFSI+VHALPGYELN+STSSV
Sbjct: 113 KRENYYPFKRVPKVAFMFLTRGPLPMLPLWERFFAGHDNLFSIYVHALPGYELNVSTSSV 172

Query: 71  FYRRADPQSAI 82
           FYRR  P   +
Sbjct: 173 FYRRQIPSQRV 183

[Close]

BLAST of CSPI02G27600.1 vs. NCBI nr
Match: gi|778676402|ref|XP_011650576.1| (PREDICTED: uncharacterized protein LOC101215808 isoform X1 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1


Query: 19  QKSAKSGFMFLTRGALPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQ 78
           ++  K  FMFLTRG LPMLPLW+RFFA H+KLFSI+VHALPGY+LN+STSSVFYRR  P 
Sbjct: 121 ERVPKVAFMFLTRGPLPMLPLWERFFAGHEKLFSIYVHALPGYKLNVSTSSVFYRRQIPS 180

Query: 79  SAI 82
             +
Sbjct: 181 QRV 183

[Close]

BLAST of CSPI02G27600.1 vs. NCBI nr
Match: gi|778676405|ref|XP_011650577.1| (PREDICTED: uncharacterized protein LOC101215808 isoform X2 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1


Query: 19  QKSAKSGFMFLTRGALPMLPLWKRFFADHDKLFSIHVHALPGYELNLSTSSVFYRRADPQ 78
           ++  K  FMFLTRG LPMLPLW+RFFA H+KLFSI+VHALPGY+LN+STSSVFYRR  P 
Sbjct: 116 ERVPKVAFMFLTRGPLPMLPLWERFFAGHEKLFSIYVHALPGYKLNVSTSSVFYRRQIPS 175

Query: 79  SAI 82
             +
Sbjct: 176 QRV 178

The following BLAST results are available for this feature:

BLAST of CSPI02G27600.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G27600.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNA6_CUCSA	9.4e-51	98.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G435490 PE=4 SV=1	[more]
A0A0A0L2Q4_CUCSA	8.0e-18	69.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110720 PE=4 SV=1	[more]
W9RJ51_9ROSA	1.3e-15	56.94	Uncharacterized protein OS=Morus notabilis GN=L484_010966 PE=4 SV=1	[more]
F6HK07_VITVI	2.4e-14	52.05	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g01710 PE=4 SV=...	[more]
V4T5B9_9ROSI	5.4e-14	55.88	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001419mg PE=4 SV=1	[more]

BLAST of CSPI02G27600.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10280.1	1.7e-14	46.58	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p...	[more]
AT3G21310.1	1.4e-13	52.54	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p...	[more]
AT1G51770.1	2.4e-13	45.71	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p...	[more]
AT1G10880.1	1.5e-10	46.67	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p...	[more]
AT1G68380.1	1.5e-10	46.67	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family p...	[more]

BLAST of CSPI02G27600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208266\|gb\|KGN63385.1\|	1.4e-50	98.04	hypothetical protein Csa_2G435490 [Cucumis sativus]	[more]
gi\|659102622\|ref\|XP_008452226.1\|	5.2e-18	64.79	PREDICTED: uncharacterized protein LOC103493307 isoform X2 [Cucumis melo]	[more]
gi\|659102620\|ref\|XP_008452225.1\|	5.2e-18	64.79	PREDICTED: uncharacterized protein LOC103493307 isoform X1 [Cucumis melo]	[more]
gi\|778676402\|ref\|XP_011650576.1\|	1.2e-17	69.84	PREDICTED: uncharacterized protein LOC101215808 isoform X1 [Cucumis sativus]	[more]
gi\|778676405\|ref\|XP_011650577.1\|	1.2e-17	69.84	PREDICTED: uncharacterized protein LOC101215808 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003406	Glyco_trans_14

Vocabulary: **Molecular Function**
Term	Definition
GO:0008375	acetylglucosaminyltransferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0008375	acetylglucosaminyltransferase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G27600	CSPI02G27600	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G27600.1	CSPI02G27600.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G27600.1.cds2	CSPI02G27600.1.cds2	CDS
CSPI02G27600.1.cds1	CSPI02G27600.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003406	Glycosyl transferase, family 14	PFAM	PF02485	Branch	coord: 26..79 score: 1.2
None	No IPR available	PANTHER	PTHR31042	FAMILY NOT NAMED	coord: 26..82 score: 1.1
None	No IPR available	PANTHER	PTHR31042:SF3	SUBFAMILY NOT NAMED	coord: 26..82 score: 1.1