CSPI02G22790.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G22790.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 19798157 .. 19798390 (-)
Sequence length	234

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGGTTGCTGAAAGCACCAGAGGAAGACATTCTCGAGCATAACCACAAGCGTGGGATTGAACTCAAACTTCTCATACTTGAGGACAAGCTCAATGATGGCCAATATAATGCTATACAGAGAAGGAAAATTTCTGAAAAGTTGAGGGAAGCTCGCGAGACTTTGAGGAACAAGATGGATCCTCTGCCATTGTTCTTGGAGGAAAAGATGGATCCAATAACCCGCTTTTAA

mRNA sequence

ATGGAAAGGTTGCTGAAAGCACCAGAGGAAGACATTCTCGAGCATAACCACAAGCGTGGGATTGAACTCAAACTTCTCATACTTGAGGACAAGCTCAATGATGGCCAATATAATGCTATACAGAGAAGGAAAATTTCTGAAAAGTTGAGGGAAGCTCGCGAGACTTTGAGGAACAAGATGGATCCTCTGCCATTGTTCTTGGAGGAAAAGATGGATCCAATAACCCGCTTTTAA

Coding sequence (CDS)

ATGGAAAGGTTGCTGAAAGCACCAGAGGAAGACATTCTCGAGCATAACCACAAGCGTGGGATTGAACTCAAACTTCTCATACTTGAGGACAAGCTCAATGATGGCCAATATAATGCTATACAGAGAAGGAAAATTTCTGAAAAGTTGAGGGAAGCTCGCGAGACTTTGAGGAACAAGATGGATCCTCTGCCATTGTTCTTGGAGGAAAAGATGGATCCAATAACCCGCTTTTAA

Homology

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BLAST of CSPI02G22790.1 vs. TrEMBL
Match: A0A0A0LQ00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379180 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-06
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1


Query: 6  KAPEEDILEHNHKRGIELKLLILEDKLNDGQYNAIQRRKISEKLREARETL 57
          K P +DILEH+ KR IELKL+ILEDKLN+  Y     ++ISEKLREARE L
Sbjct: 51 KKPNKDILEHDRKRQIELKLVILEDKLNEQGYT---EKEISEKLREARENL 98

[Close]

BLAST of CSPI02G22790.1 vs. TAIR10
Match: AT3G49601.1 (AT3G49601.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 48.1 bits (113), Expect = 2.8e-06
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1


Query: 4  LLKAPEEDILEHNHKRGIELKLLILEDKLNDGQYNAIQRRKISEKLREARETL 57
          L K P + ILEH+ KR I LKL ILEDKL D  Y+ I+   I++KL EAR +L
Sbjct: 50 LSKKPNKAILEHDRKRQIHLKLAILEDKLADQGYSDIE---IAQKLEEARVSL 99

[Close]

BLAST of CSPI02G22790.1 vs. NCBI nr
Match: gi|659088679|ref|XP_008445109.1| (PREDICTED: dentin sialophosphoprotein-like [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1


Query: 6  KAPEEDILEHNHKRGIELKLLILEDKLNDGQYNAIQRRKISEKLREARETL 57
          K P +DILEH+ KR IELKL+ILEDKLND  Y     ++ISEKLREARE L
Sbjct: 51 KKPNKDILEHDRKRQIELKLVILEDKLNDQGYT---EKEISEKLREARENL 98

[Close]

BLAST of CSPI02G22790.1 vs. NCBI nr
Match: gi|449442210|ref|XP_004138875.1| (PREDICTED: dentin sialophosphoprotein [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1


Query: 6  KAPEEDILEHNHKRGIELKLLILEDKLNDGQYNAIQRRKISEKLREARETL 57
          K P +DILEH+ KR IELKL+ILEDKLN+  Y     ++ISEKLREARE L
Sbjct: 51 KKPNKDILEHDRKRQIELKLVILEDKLNEQGYT---EKEISEKLREARENL 98

The following BLAST results are available for this feature:

BLAST of CSPI02G22790.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G22790.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ00_CUCSA	2.4e-06	64.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379180 PE=4 SV=1	[more]

BLAST of CSPI02G22790.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49601.1	2.8e-06	54.72	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CSPI02G22790.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088679\|ref\|XP_008445109.1\|	1.2e-06	66.67	PREDICTED: dentin sialophosphoprotein-like [Cucumis melo]	[more]
gi\|449442210\|ref\|XP_004138875.1\|	3.4e-06	64.71	PREDICTED: dentin sialophosphoprotein [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013170	mRNA_splic_Cwf21_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G22790	CSPI02G22790	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G22790.1	CSPI02G22790.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G22790.1.cds1	CSPI02G22790.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013170	mRNA splicing factor Cwf21 domain	PFAM	PF08312	cwf21	coord: 13..58 score: 1.