CSPI02G22790 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G22790
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 19798157 .. 19798390 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGGTTGCTGAAAGCACCAGAGGAAGACATTCTCGAGCATAACCACAAGCGTGGGATTGAACTCAAACTTCTCATACTTGAGGACAAGCTCAATGATGGCCAATATAATGCTATACAGAGAAGGAAAATTTCTGAAAAGTTGAGGGAAGCTCGCGAGACTTTGAGGAACAAGATGGATCCTCTGCCATTGTTCTTGGAGGAAAAGATGGATCCAATAACCCGCTTTTAA

mRNA sequence

ATGGAAAGGTTGCTGAAAGCACCAGAGGAAGACATTCTCGAGCATAACCACAAGCGTGGGATTGAACTCAAACTTCTCATACTTGAGGACAAGCTCAATGATGGCCAATATAATGCTATACAGAGAAGGAAAATTTCTGAAAAGTTGAGGGAAGCTCGCGAGACTTTGAGGAACAAGATGGATCCTCTGCCATTGTTCTTGGAGGAAAAGATGGATCCAATAACCCGCTTTTAA

Coding sequence (CDS)

ATGGAAAGGTTGCTGAAAGCACCAGAGGAAGACATTCTCGAGCATAACCACAAGCGTGGGATTGAACTCAAACTTCTCATACTTGAGGACAAGCTCAATGATGGCCAATATAATGCTATACAGAGAAGGAAAATTTCTGAAAAGTTGAGGGAAGCTCGCGAGACTTTGAGGAACAAGATGGATCCTCTGCCATTGTTCTTGGAGGAAAAGATGGATCCAATAACCCGCTTTTAA
Homology
[Close]
BLAST of CSPI02G22790 vs. TrEMBL
Match: A0A0A0LQ00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379180 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-06
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1 

Query: 6  KAPEEDILEHNHKRGIELKLLILEDKLNDGQYNAIQRRKISEKLREARETL 57
          K P +DILEH+ KR IELKL+ILEDKLN+  Y     ++ISEKLREARE L
Sbjct: 51 KKPNKDILEHDRKRQIELKLVILEDKLNEQGYT---EKEISEKLREARENL 98

[Close]
BLAST of CSPI02G22790 vs. TAIR10
Match: AT3G49601.1 (AT3G49601.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 48.1 bits (113), Expect = 2.8e-06
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1 

Query: 4  LLKAPEEDILEHNHKRGIELKLLILEDKLNDGQYNAIQRRKISEKLREARETL 57
          L K P + ILEH+ KR I LKL ILEDKL D  Y+ I+   I++KL EAR +L
Sbjct: 50 LSKKPNKAILEHDRKRQIHLKLAILEDKLADQGYSDIE---IAQKLEEARVSL 99

[Close]
BLAST of CSPI02G22790 vs. NCBI nr
Match: gi|659088679|ref|XP_008445109.1| (PREDICTED: dentin sialophosphoprotein-like [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1 

Query: 6  KAPEEDILEHNHKRGIELKLLILEDKLNDGQYNAIQRRKISEKLREARETL 57
          K P +DILEH+ KR IELKL+ILEDKLND  Y     ++ISEKLREARE L
Sbjct: 51 KKPNKDILEHDRKRQIELKLVILEDKLNDQGYT---EKEISEKLREARENL 98

[Close]
BLAST of CSPI02G22790 vs. NCBI nr
Match: gi|449442210|ref|XP_004138875.1| (PREDICTED: dentin sialophosphoprotein [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1 

Query: 6  KAPEEDILEHNHKRGIELKLLILEDKLNDGQYNAIQRRKISEKLREARETL 57
          K P +DILEH+ KR IELKL+ILEDKLN+  Y     ++ISEKLREARE L
Sbjct: 51 KKPNKDILEHDRKRQIELKLVILEDKLNEQGYT---EKEISEKLREARENL 98

The following BLAST results are available for this feature:
BLAST of CSPI02G22790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G22790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQ00_CUCSA2.4e-0664.71Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379180 PE=4 SV=1[more]
BLAST of CSPI02G22790 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49601.12.8e-0654.72 FUNCTIONS IN: molecular_function unknown[more]
BLAST of CSPI02G22790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088679|ref|XP_008445109.1|1.2e-0666.67PREDICTED: dentin sialophosphoprotein-like [Cucumis melo][more]
gi|449442210|ref|XP_004138875.1|3.4e-0664.71PREDICTED: dentin sialophosphoprotein [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013170mRNA_splic_Cwf21_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G22790.1CSPI02G22790.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013170mRNA splicing factor Cwf21 domainPFAMPF08312cwf21coord: 13..58
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G22790Cucurbita pepo (Zucchini)cpecpiB093
CSPI02G22790Cucurbita pepo (Zucchini)cpecpiB540
CSPI02G22790Cucurbita pepo (Zucchini)cpecpiB775
CSPI02G22790Cucurbita pepo (Zucchini)cpecpiB811
CSPI02G22790Cucurbita pepo (Zucchini)cpecpiB826
CSPI02G22790Bottle gourd (USVL1VR-Ls)cpilsiB120
CSPI02G22790Bottle gourd (USVL1VR-Ls)cpilsiB139
CSPI02G22790Melon (DHL92) v3.6.1cpimedB119
CSPI02G22790Melon (DHL92) v3.6.1cpimedB114
CSPI02G22790Cucumber (Gy14) v2cgybcpiB057
CSPI02G22790Cucumber (Gy14) v2cgybcpiB105
CSPI02G22790Silver-seed gourdcarcpiB0063
CSPI02G22790Silver-seed gourdcarcpiB0587
CSPI02G22790Silver-seed gourdcarcpiB0664
CSPI02G22790Silver-seed gourdcarcpiB1010
CSPI02G22790Silver-seed gourdcarcpiB1014
CSPI02G22790Cucumber (Chinese Long) v3cpicucB081
CSPI02G22790Cucumber (Chinese Long) v3cpicucB095
CSPI02G22790Watermelon (97103) v2cpiwmbB143
CSPI02G22790Watermelon (97103) v2cpiwmbB162
CSPI02G22790Wax gourdcpiwgoB160
CSPI02G22790Wax gourdcpiwgoB202
CSPI02G22790Wild cucumber (PI 183967)cpicpiB066
CSPI02G22790Cucumber (Gy14) v1cgycpiB239
CSPI02G22790Cucumber (Gy14) v1cgycpiB469
CSPI02G22790Cucurbita maxima (Rimu)cmacpiB013
CSPI02G22790Cucurbita maxima (Rimu)cmacpiB165
CSPI02G22790Cucurbita maxima (Rimu)cmacpiB179
CSPI02G22790Cucurbita maxima (Rimu)cmacpiB445
CSPI02G22790Cucurbita maxima (Rimu)cmacpiB794
CSPI02G22790Cucurbita moschata (Rifu)cmocpiB003
CSPI02G22790Cucurbita moschata (Rifu)cmocpiB150
CSPI02G22790Cucurbita moschata (Rifu)cmocpiB164
CSPI02G22790Cucurbita moschata (Rifu)cmocpiB434
CSPI02G22790Cucurbita moschata (Rifu)cmocpiB783
CSPI02G22790Cucumber (Chinese Long) v2cpicuB065
CSPI02G22790Cucumber (Chinese Long) v2cpicuB075
CSPI02G22790Melon (DHL92) v3.5.1cpimeB118
CSPI02G22790Melon (DHL92) v3.5.1cpimeB124
CSPI02G22790Watermelon (Charleston Gray)cpiwcgB148
CSPI02G22790Watermelon (Charleston Gray)cpiwcgB168
CSPI02G22790Watermelon (97103) v1cpiwmB112
CSPI02G22790Watermelon (97103) v1cpiwmB133