CSPI02G21240.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G21240.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	BEST plant protein match is: (TAIR:plant.1) protein, putative
Location	Chr2 : 18641426 .. 18642631 (-)
Sequence length	387

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGCTTTGGTTGAGTCCGCTTTATCTAAATTAATGGGAAAAGTTGACACCTCCATTGGTAAATTATTCTTGTTGAGTAACATCAAGGATGAATCATGTCGAAGATTGTTACATTTATCACAAAGGTAAAATTTTCAATTTATTTAATTATGTCTTTAGTCATATGTTTGAAATGATTTTCTAATTTTATTAAAATTGATTTACGTTTATAGTTTGAGTCCTCCAACTCTTAGTGCTCTAGCTTTGGCTGCTACAGTAAAAAGTCTTGAGAAAGATAATCAACAGCTTAAGAGGCTACTCCATACAACTAAAGGGGAGGTTAATTCCTGATTTATATATATACTATATGTATTGGATTCTATTAGGTCGATATAATGGTGAAGTAAAAGTGTAATTTGAGAAATTAGGGTATGTGTAAAATAGTAGTTCTAAACTTTTTTCAAATAAGATTGGTATAACTCTTGTTCCAAGATACTATCGGCTGATCATTGTTGATTAGGGCAATGAGCCACATCTTATGCCTAGTCATGAAAAGGGATGATAATTGGTTTTCTTTTTAATTTTAAACATAAAGCTCTATTAATGGATAATTAACTTATAAATCAGGTAGAAGAATTTAGAATTTAGTCTTACTGTTTTGATAAATCTTTTTAAATAATTTAATTTTGTTTTCCATATTGATTTACAATTTAACCGAAAAGATTTGAGTTTAAATTTAGTATTGGGATTTAAAATTCACTTCAACTATCAAGGAACTATATTTAATCACAATTTTTTTTAAAAAATGTAAATAATTAATTAAAAGATTTTTATTTAGTTAATTTCACCCTCTCTTCTTCACAATTATATTTATTTTTATCCAATTTTTGTGAAGGTTAAACTGCTATCCAATCAAATTGGTTATCTCATCGAGGAGCAAACGACGCCGTACCATAATATCAATGGAGGAGGAATTCCTAAACCACCAGCTGGCAGTTCCTCTGTGAAGGTTAAGAAAACTAAATGCACAATTATTAATTTCTACAACCAATATTTCATAATTGTTCTCTTTTCTTTTTGTATTATTATAATTTATATGTCAAGTTTTTGTTTAAATAACCATGAATTTATTTATATGTATGTGTGTGTGTGTGTGTGAATGGGGTTTGATCCTTTTGCATGCAGGTGCGTGAAAAGAAAAGACCATTGTTGGAGGATTGA

mRNA sequence

ATGGAAGAAGCTTTGGTTGAGTCCGCTTTATCTAAATTAATGGGAAAAGTTGACACCTCCATTGGTAAATTATTCTTGTTGAGTAACATCAAGGATGAATCATGTCGAAGATTGTTACATTTATCACAAAGTTTGAGTCCTCCAACTCTTAGTGCTCTAGCTTTGGCTGCTACAGTAAAAAGTCTTGAGAAAGATAATCAACAGCTTAAGAGGCTACTCCATACAACTAAAGGGGAGGTTAAACTGCTATCCAATCAAATTGGTTATCTCATCGAGGAGCAAACGACGCCGTACCATAATATCAATGGAGGAGGAATTCCTAAACCACCAGCTGGCAGTTCCTCTGTGAAGGTGCGTGAAAAGAAAAGACCATTGTTGGAGGATTGA

Coding sequence (CDS)

ATGGAAGAAGCTTTGGTTGAGTCCGCTTTATCTAAATTAATGGGAAAAGTTGACACCTCCATTGGTAAATTATTCTTGTTGAGTAACATCAAGGATGAATCATGTCGAAGATTGTTACATTTATCACAAAGTTTGAGTCCTCCAACTCTTAGTGCTCTAGCTTTGGCTGCTACAGTAAAAAGTCTTGAGAAAGATAATCAACAGCTTAAGAGGCTACTCCATACAACTAAAGGGGAGGTTAAACTGCTATCCAATCAAATTGGTTATCTCATCGAGGAGCAAACGACGCCGTACCATAATATCAATGGAGGAGGAATTCCTAAACCACCAGCTGGCAGTTCCTCTGTGAAGGTGCGTGAAAAGAAAAGACCATTGTTGGAGGATTGA

Homology

[Close]

BLAST of CSPI02G21240.1 vs. TrEMBL
Match: A0A0A0LNW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G369160 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.1e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60
           MEEAL+ESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK
Sbjct: 1   MEEALIESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60

Query: 61  SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVRE 120
           SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVRE
Sbjct: 61  SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVRE 120

Query: 121 KKRPLLED 129
           KKRPLLED
Sbjct: 121 KKRPLLED 128

[Close]

BLAST of CSPI02G21240.1 vs. TrEMBL
Match: A0A061FFR9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_034839 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.5e-08
Identity = 47/128 (36.72%), Postives = 73/128 (57.03%), Query Frame = 1


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60
           +EE L+ES L+ L+ K +   G+ FL +N   ESC++L+ +   L P T   L+LAA +K
Sbjct: 165 VEENLLESMLATLICKDEVMSGRAFLEANNSLESCQKLITMWHRLRPSTKKVLSLAAELK 224

Query: 61  SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQ---TTPYH---NINGGGIPKPPAGSS 120
           +LEKD + L+  L+  + EVK+L  +   L EE       YH   N++G G     +GS+
Sbjct: 225 ALEKDKEHLRINLNKAEEEVKVLFEENNILDEENKRLLMQYHKEKNLHGSG--GKHSGSA 284

Query: 121 SVKVREKK 123
           S K  ++K
Sbjct: 285 SAKTNKRK 290

[Close]

BLAST of CSPI02G21240.1 vs. TrEMBL
Match: W9REI7_9ROSA (28 kDa ribonucleoprotein OS=Morus notabilis GN=L484_013185 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 47/135 (34.81%), Postives = 66/135 (48.89%), Query Frame = 1


Query: 2   EEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVKS 61
           +++L+ES L+ L+   D   G  FL +N   ESC RLL +   L P T   L+LAA  K+
Sbjct: 166 QDSLLESVLATLISGDDAVPGHAFLEANSSHESCLRLLEMWNFLKPSTQKVLSLAAEFKA 225

Query: 62  LEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEE---------QTTPYHNINGGGIPKPPAG 121
           LEKD + L+  L+  + EVKLL  +   L EE         +    H  +G      PA 
Sbjct: 226 LEKDKEHLRTNLYRAEEEVKLLFEENNMLDEENKKLLMKFNKERNQHGSSGKHASSAPAK 285

Query: 122 SSSVKVREKKRPLLE 128
           S+  K   K   L+E
Sbjct: 286 SNKRKSSSKTSSLIE 300

[Close]

BLAST of CSPI02G21240.1 vs. TrEMBL
Match: A0A0B0PG99_GOSAR (Protein hook OS=Gossypium arboreum GN=F383_01412 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-07
Identity = 46/126 (36.51%), Postives = 68/126 (53.97%), Query Frame = 1


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60
           +EE L+ES LS L+ K +   G+ FL +N   E+C+++L +   L P T   L+LAA VK
Sbjct: 165 LEENLLESVLSTLISKDEVMCGRAFLEANNSLEACQKMLKMWNRLRPSTRKILSLAAEVK 224

Query: 61  SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQ---TTPYH-NINGGGIPKPPAGSSSV 120
           +LEKD + L+  L   + EVK+L  +   L E        YH   N  G     +GS+S 
Sbjct: 225 TLEKDKEHLRMNLCKAEDEVKVLFEENNILDEANKRLLRQYHKEKNLHGSDGKHSGSAST 284

Query: 121 KVREKK 123
           K  ++K
Sbjct: 285 KTNKRK 290

[Close]

BLAST of CSPI02G21240.1 vs. TrEMBL
Match: K7M7Q6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G177700 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-07
Identity = 46/128 (35.94%), Postives = 66/128 (51.56%), Query Frame = 1


Query: 2   EEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVKS 61
           EE L++S L+ +    D S    FL +N ++E C ++L +   L P T   L L A VKS
Sbjct: 164 EENLLDSLLATVTTTTDESSTYAFLSANSENEHCEKMLTMWNCLKPSTRRVLCLVAEVKS 223

Query: 62  LEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTT-------PYHNINGGGIPKPPAGSS 121
           LE D + L+  LH  + EVKLL ++   L EE            H+ +GG     P GS+
Sbjct: 224 LENDKENLRVNLHRAEEEVKLLFDENSVLDEENKRLAKRCKGRNHSSSGG----KPTGSA 283

Query: 122 SVKVREKK 123
           SVK  ++K
Sbjct: 284 SVKSNKRK 287

[Close]

BLAST of CSPI02G21240.1 vs. TAIR10
Match: AT4G09060.2 (AT4G09060.2 unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 3.8e-08
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 1


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60
           +EE L++S L  L+ K +T +G+LFL +NI D+SC+ LL     L P T   L+L +  K
Sbjct: 205 LEEDLLDSVLGSLISKDETIMGRLFLEANIHDQSCQALLSKWDHLKPSTQKVLSLVSKAK 264

Query: 61  SLEKDNQQLKRLLHTTKGEVKLLS 85
             EK+ + +   L   + EV+L+S
Sbjct: 265 KFEKEKECIIMNLAKAEQEVELVS 288

[Close]

BLAST of CSPI02G21240.1 vs. NCBI nr
Match: gi|700207595|gb|KGN62714.1| (hypothetical protein Csa_2G369160 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 7.3e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60
           MEEAL+ESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK
Sbjct: 1   MEEALIESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60

Query: 61  SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVRE 120
           SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVRE
Sbjct: 61  SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVRE 120

Query: 121 KKRPLLED 129
           KKRPLLED
Sbjct: 121 KKRPLLED 128

[Close]

BLAST of CSPI02G21240.1 vs. NCBI nr
Match: gi|659088212|ref|XP_008444861.1| (PREDICTED: uncharacterized protein LOC103488082 [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 7.9e-40
Identity = 94/129 (72.87%), Postives = 110/129 (85.27%), Query Frame = 1


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNIK-DESCRRLLHLSQSLSPPTLSALALAATV 60
           MEE LVESALS+L+G+ D+S   LFLL NIK DESCRRLLHLS+SLSPPTL ALA+A T+
Sbjct: 9   MEEGLVESALSQLIGETDSSAPILFLLRNIKKDESCRRLLHLSRSLSPPTLRALAMADTI 68

Query: 61  KSLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVR 120
           K+LEK+NQQL++LL TT+GEVKLLS+QIGYL+E + T   +INGGGI KPPA SSSVKV 
Sbjct: 69  KTLEKENQQLQKLLCTTQGEVKLLSDQIGYLMEGKKTSCDDINGGGIRKPPAASSSVKVN 128

Query: 121 EKKRPLLED 129
           EKKRPL ED
Sbjct: 129 EKKRPLSED 137

[Close]

BLAST of CSPI02G21240.1 vs. NCBI nr
Match: gi|590597715|ref|XP_007018691.1| (Uncharacterized protein TCM_034839 [Theobroma cacao])

HSP 1 Score: 65.5 bits (158), Expect = 8.0e-08
Identity = 47/128 (36.72%), Postives = 73/128 (57.03%), Query Frame = 1


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60
           +EE L+ES L+ L+ K +   G+ FL +N   ESC++L+ +   L P T   L+LAA +K
Sbjct: 165 VEENLLESMLATLICKDEVMSGRAFLEANNSLESCQKLITMWHRLRPSTKKVLSLAAELK 224

Query: 61  SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQ---TTPYH---NINGGGIPKPPAGSS 120
           +LEKD + L+  L+  + EVK+L  +   L EE       YH   N++G G     +GS+
Sbjct: 225 ALEKDKEHLRINLNKAEEEVKVLFEENNILDEENKRLLMQYHKEKNLHGSG--GKHSGSA 284

Query: 121 SVKVREKK 123
           S K  ++K
Sbjct: 285 SAKTNKRK 290

[Close]

BLAST of CSPI02G21240.1 vs. NCBI nr
Match: gi|703115895|ref|XP_010101007.1| (28 kDa ribonucleoprotein [Morus notabilis])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 47/135 (34.81%), Postives = 66/135 (48.89%), Query Frame = 1


Query: 2   EEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVKS 61
           +++L+ES L+ L+   D   G  FL +N   ESC RLL +   L P T   L+LAA  K+
Sbjct: 166 QDSLLESVLATLISGDDAVPGHAFLEANSSHESCLRLLEMWNFLKPSTQKVLSLAAEFKA 225

Query: 62  LEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEE---------QTTPYHNINGGGIPKPPAG 121
           LEKD + L+  L+  + EVKLL  +   L EE         +    H  +G      PA 
Sbjct: 226 LEKDKEHLRTNLYRAEEEVKLLFEENNMLDEENKKLLMKFNKERNQHGSSGKHASSAPAK 285

Query: 122 SSSVKVREKKRPLLE 128
           S+  K   K   L+E
Sbjct: 286 SNKRKSSSKTSSLIE 300

[Close]

BLAST of CSPI02G21240.1 vs. NCBI nr
Match: gi|728846035|gb|KHG25478.1| (Protein hook [Gossypium arboreum])

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-07
Identity = 46/126 (36.51%), Postives = 68/126 (53.97%), Query Frame = 1


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60
           +EE L+ES LS L+ K +   G+ FL +N   E+C+++L +   L P T   L+LAA VK
Sbjct: 165 LEENLLESVLSTLISKDEVMCGRAFLEANNSLEACQKMLKMWNRLRPSTRKILSLAAEVK 224

Query: 61  SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQ---TTPYH-NINGGGIPKPPAGSSSV 120
           +LEKD + L+  L   + EVK+L  +   L E        YH   N  G     +GS+S 
Sbjct: 225 TLEKDKEHLRMNLCKAEDEVKVLFEENNILDEANKRLLRQYHKEKNLHGSDGKHSGSAST 284

Query: 121 KVREKK 123
           K  ++K
Sbjct: 285 KTNKRK 290

The following BLAST results are available for this feature:

BLAST of CSPI02G21240.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G21240.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNW1_CUCSA	5.1e-62	99.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G369160 PE=4 SV=1	[more]
A0A061FFR9_THECC	5.5e-08	36.72	Uncharacterized protein OS=Theobroma cacao GN=TCM_034839 PE=4 SV=1	[more]
W9REI7_9ROSA	1.2e-07	34.81	28 kDa ribonucleoprotein OS=Morus notabilis GN=L484_013185 PE=4 SV=1	[more]
A0A0B0PG99_GOSAR	1.6e-07	36.51	Protein hook OS=Gossypium arboreum GN=F383_01412 PE=4 SV=1	[more]
K7M7Q6_SOYBN	1.6e-07	35.94	Uncharacterized protein OS=Glycine max GN=GLYMA_14G177700 PE=4 SV=1	[more]

BLAST of CSPI02G21240.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09060.2	3.8e-08	38.10	unknown protein	[more]

BLAST of CSPI02G21240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207595\|gb\|KGN62714.1\|	7.3e-62	99.22	hypothetical protein Csa_2G369160 [Cucumis sativus]	[more]
gi\|659088212\|ref\|XP_008444861.1\|	7.9e-40	72.87	PREDICTED: uncharacterized protein LOC103488082 [Cucumis melo]	[more]
gi\|590597715\|ref\|XP_007018691.1\|	8.0e-08	36.72	Uncharacterized protein TCM_034839 [Theobroma cacao]	[more]
gi\|703115895\|ref\|XP_010101007.1\|	1.8e-07	34.81	28 kDa ribonucleoprotein [Morus notabilis]	[more]
gi\|728846035\|gb\|KHG25478.1\|	2.3e-07	36.51	Protein hook [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G21240	CSPI02G21240	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G21240.1	CSPI02G21240.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G21240.1.cds4	CSPI02G21240.1.cds4	CDS
CSPI02G21240.1.cds3	CSPI02G21240.1.cds3	CDS
CSPI02G21240.1.cds2	CSPI02G21240.1.cds2	CDS
CSPI02G21240.1.cds1	CSPI02G21240.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 52..86 scor