CSPI02G18150.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI02G18150.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 16865360 .. 16865738 (-)
Sequence length183
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGTACAGCAAGCAATTGGATCTTCTCATTCTTTCATCTTCTACACTCTATAAATAATTTCACGTTATTCATAATCAATTTCCACAGAAACATCAACATAGTGTACTATCTCATTCTCCAGTAGGACAAAAGTTGTTGGGGCATCTATTGAAATGAGTCTCTTCTCTCTAATTTTCCGTTTGTTCCCTTCTTGCCTCTGCTCATCCCCAGTCTCAGATGTCGGGAAGGAGATTCCGGTGAAGAAATTGGCAGCGCCCGCGGAGACTAAGGAAGCTCCGATTGAAGTGGGCAATTCTCATGTTAATTCCTATCACTCTCACTTGTACTGGCGATGACGATGCCCATTCCATCAATTGTACGAGCTAGGGAGGATTGCTT

mRNA sequence

ATGAGTCTCTTCTCTCTAATTTTCCGTTTGTTCCCTTCTTGCCTCTGCTCATCCCCAGTCTCAGATGTCGGGAAGGAGATTCCGGTGAAGAAATTGGCAGCGCCCGCGGAGACTAAGGAAGCTCCGATTGAAGTGGGCAATTCTCATGTTAATTCCTATCACTCTCACTTGTACTGGCGATGA

Coding sequence (CDS)

ATGAGTCTCTTCTCTCTAATTTTCCGTTTGTTCCCTTCTTGCCTCTGCTCATCCCCAGTCTCAGATGTCGGGAAGGAGATTCCGGTGAAGAAATTGGCAGCGCCCGCGGAGACTAAGGAAGCTCCGATTGAAGTGGGCAATTCTCATGTTAATTCCTATCACTCTCACTTGTACTGGCGATGA
Homology
[Close]
BLAST of CSPI02G18150.1 vs. TrEMBL
Match: A0A0A0LKG4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351860 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.4e-25
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1 

Query: 1  MSLFSLIFRLFPSCLCSSPVSDVGKEIPVKKLAAPAETKEAPIEVGNSHVNSYHSHLYWR 60
          MSLFSLIFRLFPSCL SSPVSDVGKEIPVKKLAAPAETKEAPIEVGNSHVNSYHSHLYWR
Sbjct: 1  MSLFSLIFRLFPSCLSSSPVSDVGKEIPVKKLAAPAETKEAPIEVGNSHVNSYHSHLYWR 60

[Close]
BLAST of CSPI02G18150.1 vs. NCBI nr
Match: gi|700207286|gb|KGN62405.1| (hypothetical protein Csa_2G351860 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 3.4e-25
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1 

Query: 1  MSLFSLIFRLFPSCLCSSPVSDVGKEIPVKKLAAPAETKEAPIEVGNSHVNSYHSHLYWR 60
          MSLFSLIFRLFPSCL SSPVSDVGKEIPVKKLAAPAETKEAPIEVGNSHVNSYHSHLYWR
Sbjct: 1  MSLFSLIFRLFPSCLSSSPVSDVGKEIPVKKLAAPAETKEAPIEVGNSHVNSYHSHLYWR 60

The following BLAST results are available for this feature:
BLAST of CSPI02G18150.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G18150.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKG4_CUCSA2.4e-2598.33Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351860 PE=4 SV=1[more]
BLAST of CSPI02G18150.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G18150.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207286|gb|KGN62405.1|3.4e-2598.33hypothetical protein Csa_2G351860 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G18150CSPI02G18150gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G18150.1CSPI02G18150.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G18150.1.utr3p1CSPI02G18150.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G18150.1.cds1CSPI02G18150.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G18150.1.utr5p1CSPI02G18150.1.utr5p1five_prime_UTR