CSPI02G16590.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G16590.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	60S ribosomal protein L34
Location	Chr2 : 15944427 .. 15946535 (+)
Sequence length	363

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATAAAGCCCATAGAAAAAAGATTTTTTTTTAAAGGACAAGATTAAATCTCAATCTCGTACTAACCGTCAGATCTAGGGCAGGGCAACGAGGTTAAAATCTCAATCTCAATCTCTGCAGCAGCCCAGAGCAAAGAAGAGAAAATGGTGCAGCGTCTTACATACCGCAAGCGCCATAGCTATGCTACCAAGTCTAACCAGCACCGCGTCGTCAAAACCCCTGGTAAACTATCGGATTCCTTCCCATAGCTATTCTATCAAGTGTTTTTTAACTTCAATGTCAATCAATCGGTTTTCGTATTTATTGTTTCTGCTTTTATCATCTCCTTCTATTTTGTGTTTAGGTGGGAAGCTTGTGTATCAGACTACCAAGAAAAGAGCTAGCGGACCCAAATGTCCGGTTACCGGCAAAAGGATTCAGGGGGTATGTATTTGATTACTCTTATCTGCTTCTTTTATCACTTAATCTTATTTGTGTTTTGCTTTTTTTAGGATGGTTATATTATCTCTTTGTACTTTAGATCTTTGCGGTAAATACCTTTGAAACTTGTTTTGTTGATAAGGAAAGATGAAATAAAAACTGATGCAGAAAGTTTGTTCTAGTTGCCGCATTTGTGTTGCATTAGAGAAAAAAATGGTTTCCCCTTACTGAAATTTTGGATTTTGGTTCTTTGTGATCGTTACACACCACCTTTTACTGAATATTTTAGTTGTTTTTTTTTCTCAGTTCATTTGTACTTTTTGTTTCCCTTTGTAAAAAAATAACTATGGCAGAGTGGTTTCTGATTGAGTTGTTATTAACGAATATTAAATGAATCTTGATTGGTTGATGCATGCATGTAAATTCTTGCATATACTGCTCTTATACCTTTGTTTGAATATCATATTTTTCACAGAAGGGTAAATTTATATTACTTCTCTTTAATGGTCGGAAGGATTCTTCACTGACCTAAACTTGTTTCAGATTTTTTTTAAAAAAAGGAATGCATTCGAGAACGTGTAGAACCGTATATTAAGTTGATTCAGAAAGTTCAAATCTTCAGTCTTTTAAACTGCATCCTAATGACACTCCTGCGGAATGTGCTTTCATTTTATATGTTAAGATAAGATAGCTGCATTATCTTAGGTCTGTCTTCCAAAAGTTGTGAATGGTTTTTGGGTTTTCAATTTTGCAAATACATATATTAATATGCACATTTTTGCACCACAGCAACATGTGTATCTATACTAAATTGGATCATTGTGGATTGGTTGATGCATGCATGTAAATTTTTGCAAGTTACATTCATTGTTTATATGCCGGTAGTCGCACATGCATTTACATTTGGTACTTTGGCTGTATTTTGAACTAAATGATAGTTTTCTAAATTTAAGTTTGTTTTTTAGAAGAGCGATATTTGTATTTTCGTTCATTTCTAATAATCTGACATAAACTCGGAATTTACGTGAAGATGGTTCAATCCTAATTTTGTGTTAAGTTAATCTGTGTAAGTTTATGATTATTGCAGATTCCTCACTTGAGGCCAGCTGAATACAAGAGGTCTAGACTAGCTAGGAACAGGAGGACTGTGAATCGTGCATACGGTGGCGTTTTATCTGGCAGTGCTGTGAGGGAGAGGTTGGCTTCCCACTCTTTCTCATCACTTGTTTTCTCATCTCTTTGATTATATTTATGGTAGTTAAGCATTGTGCTAATCCTTATTTTGGTTTGGGATAGGATCATCCGGGCCTTTTTGGTGGAAGAGCAGAAGATTGTGAAGAAGGTATTGAAGATTCAGAAGGCGAAGGAAAAGCTGGCATCAAAGAGCTAAATTAATTGTGTTGAAATTTTGACTTTTTTTGTGACGTGATGTTGAATTTTAGCAATTACTATTTAAAGTTTGTTTTTGGAAGAACGAGATTTTAGCTCCGGAGTTCCCTTCAATGATATCATGACATTTTTTTCCCTAGTTTTTATAATGGCATTTCTTCAACAAATTTCTTCAAGACCGTTTGATTAAGTATCTCCTTTCCCTTGTCTGCGGTTTTCCTCGAATTAAAATGTGTTCTGCTTATGGTGTTTTTGTGGGAAAAGCGACGACCATGAAATTTGGTTTGGCATCCGACCC

mRNA sequence

ATGGTGCAGCGTCTTACATACCGCAAGCGCCATAGCTATGCTACCAAGTCTAACCAGCACCGCGTCGTCAAAACCCCTGGTGGGAAGCTTGTGTATCAGACTACCAAGAAAAGAGCTAGCGGACCCAAATGTCCGGTTACCGGCAAAAGGATTCAGGGGATTCCTCACTTGAGGCCAGCTGAATACAAGAGGTCTAGACTAGCTAGGAACAGGAGGACTGTGAATCGTGCATACGGTGGCGTTTTATCTGGCAGTGCTGTGAGGGAGAGGATCATCCGGGCCTTTTTGGTGGAAGAGCAGAAGATTGTGAAGAAGGTATTGAAGATTCAGAAGGCGAAGGAAAAGCTGGCATCAAAGAGCTAA

Coding sequence (CDS)

ATGGTGCAGCGTCTTACATACCGCAAGCGCCATAGCTATGCTACCAAGTCTAACCAGCACCGCGTCGTCAAAACCCCTGGTGGGAAGCTTGTGTATCAGACTACCAAGAAAAGAGCTAGCGGACCCAAATGTCCGGTTACCGGCAAAAGGATTCAGGGGATTCCTCACTTGAGGCCAGCTGAATACAAGAGGTCTAGACTAGCTAGGAACAGGAGGACTGTGAATCGTGCATACGGTGGCGTTTTATCTGGCAGTGCTGTGAGGGAGAGGATCATCCGGGCCTTTTTGGTGGAAGAGCAGAAGATTGTGAAGAAGGTATTGAAGATTCAGAAGGCGAAGGAAAAGCTGGCATCAAAGAGCTAA

Homology

[Close]

BLAST of CSPI02G16590.1 vs. Swiss-Prot
Match: RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 3.9e-57
Identity = 115/120 (95.83%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of CSPI02G16590.1 vs. Swiss-Prot
Match: RL341_ARATH (60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-55
Identity = 111/120 (92.50%), Postives = 117/120 (97.50%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of CSPI02G16590.1 vs. Swiss-Prot
Match: RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-55
Identity = 112/120 (93.33%), Postives = 116/120 (96.67%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR+RHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQK KEK A+K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

[Close]

BLAST of CSPI02G16590.1 vs. Swiss-Prot
Match: RL342_ARATH (60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-54
Identity = 110/119 (92.44%), Postives = 114/119 (95.80%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 120
           EYKRSRL+RNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of CSPI02G16590.1 vs. Swiss-Prot
Match: RL343_ARATH (60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 9.0e-54
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of CSPI02G16590.1 vs. TrEMBL
Match: A0A0A0LK03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G338890 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 7.9e-57
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CSPI02G16590.1 vs. TrEMBL
Match: A0A0A0LP37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009690 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGV+SGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVVSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CSPI02G16590.1 vs. TrEMBL
Match: A0A059D9F6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03442 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 5.1e-56
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CSPI02G16590.1 vs. TrEMBL
Match: A0A068TVQ9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032233001 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 5.1e-56
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           M QRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MAQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of CSPI02G16590.1 vs. TrEMBL
Match: K4BBU9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 5.1e-56
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRIVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL RNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CSPI02G16590.1 vs. TAIR10
Match: AT1G26880.1 (AT1G26880.1 Ribosomal protein L34e superfamily protein)

HSP 1 Score: 216.1 bits (549), Expect = 1.2e-56
Identity = 111/120 (92.50%), Postives = 117/120 (97.50%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of CSPI02G16590.1 vs. TAIR10
Match: AT1G69620.1 (AT1G69620.1 ribosomal protein L34)

HSP 1 Score: 213.8 bits (543), Expect = 6.0e-56
Identity = 110/119 (92.44%), Postives = 114/119 (95.80%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 120
           EYKRSRL+RNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of CSPI02G16590.1 vs. TAIR10
Match: AT3G28900.1 (AT3G28900.1 Ribosomal protein L34e superfamily protein)

HSP 1 Score: 210.7 bits (535), Expect = 5.1e-55
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of CSPI02G16590.1 vs. NCBI nr
Match: gi|449459176|ref|XP_004147322.1| (PREDICTED: 60S ribosomal protein L34 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-56
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CSPI02G16590.1 vs. NCBI nr
Match: gi|778655948|ref|XP_004138165.2| (PREDICTED: 60S ribosomal protein L34-like [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 2.5e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGV+SGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVVSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CSPI02G16590.1 vs. NCBI nr
Match: gi|702277736|ref|XP_010044743.1| (PREDICTED: 60S ribosomal protein L34 [Eucalyptus grandis])

HSP 1 Score: 224.9 bits (572), Expect = 7.4e-56
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CSPI02G16590.1 vs. NCBI nr
Match: gi|661895753|emb|CDP00331.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 224.9 bits (572), Expect = 7.4e-56
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           M QRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MAQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of CSPI02G16590.1 vs. NCBI nr
Match: gi|460372822|ref|XP_004232223.1| (PREDICTED: 60S ribosomal protein L34 [Solanum lycopersicum])

HSP 1 Score: 224.9 bits (572), Expect = 7.4e-56
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRIVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL RNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

The following BLAST results are available for this feature:

BLAST of CSPI02G16590.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL34_TOBAC	3.9e-57	95.83	60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1	[more]
RL341_ARATH	2.1e-55	92.50	60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1	[more]
RL34_PEA	2.1e-55	93.33	60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1	[more]
RL342_ARATH	1.1e-54	92.44	60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=3 SV=1	[more]
RL343_ARATH	9.0e-54	90.83	60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1	[more]

BLAST of CSPI02G16590.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK03_CUCSA	7.9e-57	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G338890 PE=4 SV=1	[more]
A0A0A0LP37_CUCSA	1.8e-56	99.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009690 PE=4 SV=1	[more]
A0A059D9F6_EUCGR	5.1e-56	98.33	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03442 PE=4 SV=1	[more]
A0A068TVQ9_COFCA	5.1e-56	98.33	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032233001 PE=4 SV=1	[more]
K4BBU9_SOLLC	5.1e-56	97.50	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of CSPI02G16590.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26880.1	1.2e-56	92.50	Ribosomal protein L34e superfamily protein	[more]
AT1G69620.1	6.0e-56	92.44	ribosomal protein L34	[more]
AT3G28900.1	5.1e-55	90.83	Ribosomal protein L34e superfamily protein	[more]

BLAST of CSPI02G16590.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459176\|ref\|XP_004147322.1\|	1.1e-56	100.00	PREDICTED: 60S ribosomal protein L34 [Cucumis sativus]	[more]
gi\|778655948\|ref\|XP_004138165.2\|	2.5e-56	99.17	PREDICTED: 60S ribosomal protein L34-like [Cucumis sativus]	[more]
gi\|702277736\|ref\|XP_010044743.1\|	7.4e-56	98.33	PREDICTED: 60S ribosomal protein L34 [Eucalyptus grandis]	[more]
gi\|661895753\|emb\|CDP00331.1\|	7.4e-56	98.33	unnamed protein product [Coffea canephora]	[more]
gi\|460372822\|ref\|XP_004232223.1\|	7.4e-56	97.50	PREDICTED: 60S ribosomal protein L34 [Solanum lycopersicum]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G16590	CSPI02G16590	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G16590.1	CSPI02G16590.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G16590.1.utr5p1	CSPI02G16590.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G16590.1.cds1	CSPI02G16590.1.cds1	CDS
CSPI02G16590.1.cds2	CSPI02G16590.1.cds2	CDS
CSPI02G16590.1.cds3	CSPI02G16590.1.cds3	CDS
CSPI02G16590.1.cds4	CSPI02G16590.1.cds4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G16590.1.utr3p1	CSPI02G16590.1.utr3p1	three_prime_UTR